TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.1
(584 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV538026.1|AV538026 AV538026 Arabidopsis thaliana roots ... 144 3e-033
gb|BP595589.1|BP595589 BP595589 RAFL15 Arabidopsis thaliana... 144 3e-033
gb|AF222719.1|AF222719 Arabidopsis thaliana sterol 4-alpha-... 144 3e-033
gb|BT002780.1| Arabidopsis thaliana clone RAFL14-89-L18 (R2... 144 3e-033
gb|BT005125.1| Arabidopsis thaliana clone U20198 putative C... 144 3e-033
emb|BX819624.1|CNS0A9T3 Arabidopsis thaliana Full-length cD... 144 3e-033
emb|CQ769015.1| Sequence 19 from Patent WO2004007730 144 3e-033
gb|AF327853.1| Arabidopsis thaliana sterol 4-alpha-methyl-o... 144 3e-033
ref|NM_179802.1| Arabidopsis thaliana SMO2-1; C-4 methylste... 144 3e-033
ref|NM_201830.1| Arabidopsis thaliana SMO2-1; C-4 methylste... 144 3e-033
gb|BP610683.1|BP610683 BP610683 RAFL16 Arabidopsis thaliana... 141 1e-032
gb|BT002793.1| Arabidopsis thaliana clone RAFL14-96-B14 (R2... 141 1e-032
gb|AY087267.1| Arabidopsis thaliana clone 33426 mRNA, compl... 141 1e-032
emb|BX841564.1|CNS09YF9 Arabidopsis thaliana Full-length cD... 141 1e-032
emb|BX815281.1|CNS0ABC4 Arabidopsis thaliana Full-length cD... 141 1e-032
emb|BX817293.1|CNS0AB3H Arabidopsis thaliana Full-length cD... 141 1e-032
emb|BX817847.1|CNS0AB3I Arabidopsis thaliana Full-length cD... 141 1e-032
gb|BT015609.1| Arabidopsis thaliana At1g07420 mRNA sequence 141 1e-032
gb|AF346734.1| Arabidopsis thaliana sterol 4-alpha-methyl-o... 141 1e-032
ref|NM_100616.2| Arabidopsis thaliana SMO2-2; C-4 methylste... 141 1e-032
ref|NM_202048.1| Arabidopsis thaliana SMO2-2; C-4 methylste... 141 1e-032
gb|BX840571.1|BX840571 BX840571 Arabidopsis thaliana Siliqu... 134 2e-030
ref|NM_128493.2| Arabidopsis thaliana SMO2-1; C-4 methylste... 78 1e-028
gb|AY086287.1| Arabidopsis thaliana clone 23439 mRNA, compl... 78 1e-028
gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P... 77 1e-028
gb|BP627387.1|BP627387 BP627387 RAFL17 Arabidopsis thaliana... 127 2e-028
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 74 6e-028
gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis tha... 74 6e-028
gb|AU227233.1|AU227233 AU227233 RAFL14 Arabidopsis thaliana... 124 2e-027
>gb|AV538026.1|AV538026 AV538026 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109c03F 3', mRNA sequence
Length = 617
Score = 144 bits (308), Expect = 3e-033
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = -3 / -1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM+LRV++TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 446 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 270
>gb|BP595589.1|BP595589 BP595589 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-30-L16 3',
mRNA sequence
Length = 445
Score = 144 bits (308), Expect = 3e-033
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = -3 / -3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM+LRV++TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 425 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 249
>gb|AF222719.1|AF222719 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase (SMO) mRNA,
partial cds
Length = 720
Score = 144 bits (308), Expect = 3e-033
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM+LRV++TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 490 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 666
>gb|BT002780.1| Arabidopsis thaliana clone RAFL14-89-L18 (R20198) putative C-4
sterol methyl oxidase (At2g29390) mRNA, complete cds
Length = 1076
Score = 144 bits (308), Expect = 3e-033
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM+LRV++TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 618 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 794
>gb|BT005125.1| Arabidopsis thaliana clone U20198 putative C-4 sterol methyl
oxidase (At2g29390) mRNA, complete cds
Length = 814
Score = 144 bits (308), Expect = 3e-033
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM+LRV++TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 553 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 729
>emb|BX819624.1|CNS0A9T3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB95ZD07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1281
Score = 144 bits (308), Expect = 3e-033
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM+LRV++TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 883 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 1059
>emb|CQ769015.1| Sequence 19 from Patent WO2004007730
Length = 759
Score = 144 bits (308), Expect = 3e-033
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM+LRV++TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 529 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 705
>gb|AF327853.1| Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA, complete
cds
Length = 783
Score = 144 bits (308), Expect = 3e-033
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM+LRV++TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 553 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 729
>ref|NM_179802.1| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.2 mRNA, complete
cds
Length = 1063
Score = 144 bits (308), Expect = 3e-033
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM+LRV++TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 618 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 794
>ref|NM_201830.1| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.3 mRNA, complete
cds
Length = 1328
Score = 144 bits (308), Expect = 3e-033
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWM+LRV++TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 883 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 1059
>gb|BP610683.1|BP610683 BP610683 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-12-G17 3',
mRNA sequence
Length = 512
Score = 141 bits (303), Expect = 1e-032
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -3 / -1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 458 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 282
Score = 103 bits (220), Expect = 4e-021
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2 / +1
Query: 407 QSM*TNVEA*FPDFVYSTR*W*SWKSEPPYRGRKFDGLHGKX*PV*ASTVFNTLNTIHS 583
QS+ T VE *FPDFVYS+R*W*SWKS PPYRGRKF+ LHGK *P ASTV +TLNTIH+
Sbjct: 283 QSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLNTIHN 459
>gb|BT002793.1| Arabidopsis thaliana clone RAFL14-96-B14 (R20187) At1g07420 mRNA,
complete sequence
Length = 1101
Score = 141 bits (303), Expect = 1e-032
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 625 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 801
Score = 103 bits (220), Expect = 4e-021
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2 / -2
Query: 407 QSM*TNVEA*FPDFVYSTR*W*SWKSEPPYRGRKFDGLHGKX*PV*ASTVFNTLNTIHS 583
QS+ T VE *FPDFVYS+R*W*SWKS PPYRGRKF+ LHGK *P ASTV +TLNTIH+
Sbjct: 800 QSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLNTIHN 624
>gb|AY087267.1| Arabidopsis thaliana clone 33426 mRNA, complete sequence
Length = 1126
Score = 141 bits (303), Expect = 1e-032
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 656 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 832
Score = 103 bits (220), Expect = 4e-021
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2 / -2
Query: 407 QSM*TNVEA*FPDFVYSTR*W*SWKSEPPYRGRKFDGLHGKX*PV*ASTVFNTLNTIHS 583
QS+ T VE *FPDFVYS+R*W*SWKS PPYRGRKF+ LHGK *P ASTV +TLNTIH+
Sbjct: 831 QSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLNTIHN 655
>emb|BX841564.1|CNS09YF9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH62ZA10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1051
Score = 141 bits (303), Expect = 1e-032
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -3 / -2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 441 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 265
Score = 103 bits (220), Expect = 4e-021
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2 / +2
Query: 407 QSM*TNVEA*FPDFVYSTR*W*SWKSEPPYRGRKFDGLHGKX*PV*ASTVFNTLNTIHS 583
QS+ T VE *FPDFVYS+R*W*SWKS PPYRGRKF+ LHGK *P ASTV +TLNTIH+
Sbjct: 266 QSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLNTIHN 442
>emb|BX815281.1|CNS0ABC4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS49ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1318
Score = 141 bits (303), Expect = 1e-032
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 853 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 1029
Score = 103 bits (220), Expect = 4e-021
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2 / -3
Query: 407 QSM*TNVEA*FPDFVYSTR*W*SWKSEPPYRGRKFDGLHGKX*PV*ASTVFNTLNTIHS 583
QS+ T VE *FPDFVYS+R*W*SWKS PPYRGRKF+ LHGK *P ASTV +TLNTIH+
Sbjct: 1028 QSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLNTIHN 852
>emb|BX817293.1|CNS0AB3H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL12ZC08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 606
Score = 141 bits (303), Expect = 1e-032
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 93 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 269
Score = 103 bits (220), Expect = 4e-021
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2 / -3
Query: 407 QSM*TNVEA*FPDFVYSTR*W*SWKSEPPYRGRKFDGLHGKX*PV*ASTVFNTLNTIHS 583
QS+ T VE *FPDFVYS+R*W*SWKS PPYRGRKF+ LHGK *P ASTV +TLNTIH+
Sbjct: 268 QSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLNTIHN 92
>emb|BX817847.1|CNS0AB3I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL44ZH05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1051
Score = 141 bits (303), Expect = 1e-032
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 606 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 782
Score = 103 bits (220), Expect = 4e-021
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2 / -1
Query: 407 QSM*TNVEA*FPDFVYSTR*W*SWKSEPPYRGRKFDGLHGKX*PV*ASTVFNTLNTIHS 583
QS+ T VE *FPDFVYS+R*W*SWKS PPYRGRKF+ LHGK *P ASTV +TLNTIH+
Sbjct: 781 QSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLNTIHN 605
>gb|BT015609.1| Arabidopsis thaliana At1g07420 mRNA sequence
Length = 543
Score = 141 bits (303), Expect = 1e-032
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 295 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 471
Score = 103 bits (220), Expect = 4e-021
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2 / -2
Query: 407 QSM*TNVEA*FPDFVYSTR*W*SWKSEPPYRGRKFDGLHGKX*PV*ASTVFNTLNTIHS 583
QS+ T VE *FPDFVYS+R*W*SWKS PPYRGRKF+ LHGK *P ASTV +TLNTIH+
Sbjct: 470 QSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLNTIHN 294
>gb|AF346734.1| Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA, complete
cds
Length = 801
Score = 141 bits (303), Expect = 1e-032
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 553 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 729
Score = 103 bits (220), Expect = 4e-021
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2 / -2
Query: 407 QSM*TNVEA*FPDFVYSTR*W*SWKSEPPYRGRKFDGLHGKX*PV*ASTVFNTLNTIHS 583
QS+ T VE *FPDFVYS+R*W*SWKS PPYRGRKF+ LHGK *P ASTV +TLNTIH+
Sbjct: 728 QSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLNTIHN 552
>ref|NM_100616.2| Arabidopsis thaliana SMO2-2; C-4 methylsterol oxidase AT1G07420
(SMO2-2) transcript variant AT1G07420.1 mRNA, complete
cds
Length = 1168
Score = 141 bits (303), Expect = 1e-032
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 656 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 832
Score = 103 bits (220), Expect = 4e-021
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2 / -2
Query: 407 QSM*TNVEA*FPDFVYSTR*W*SWKSEPPYRGRKFDGLHGKX*PV*ASTVFNTLNTIHS 583
QS+ T VE *FPDFVYS+R*W*SWKS PPYRGRKF+ LHGK *P ASTV +TLNTIH+
Sbjct: 831 QSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLNTIHN 655
>ref|NM_202048.1| Arabidopsis thaliana SMO2-2; C-4 methylsterol oxidase AT1G07420
(SMO2-2) transcript variant AT1G07420.2 mRNA, complete
cds
Length = 1365
Score = 141 bits (303), Expect = 1e-032
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 853 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 1029
Score = 103 bits (220), Expect = 4e-021
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2 / -2
Query: 407 QSM*TNVEA*FPDFVYSTR*W*SWKSEPPYRGRKFDGLHGKX*PV*ASTVFNTLNTIHS 583
QS+ T VE *FPDFVYS+R*W*SWKS PPYRGRKF+ LHGK *P ASTV +TLNTIH+
Sbjct: 1028 QSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLNTIHN 852
>gb|BX840571.1|BX840571 BX840571 Arabidopsis thaliana Silique Col-0 Arabidopsis thaliana
cDNA clone GSLTSIL67ZB01 5PRIM, mRNA sequence
Length = 972
Score = 134 bits (288), Expect = 2e-030
Identities = 48/56 (85%), Positives = 54/56 (96%)
Frame = -3 / +2
Query: 573 VLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
+LRV++TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 572 MLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 739
>ref|NM_128493.2| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.1 mRNA, complete
cds
Length = 1104
Score = 77.6 bits (163), Expect(2) = 1e-028
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGS 484
LWM+LRV++TVEAH GY FPWSPSNFLPLYGGS
Sbjct: 626 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGS 724
Score = 71.2 bits (149), Expect(2) = 1e-028
Identities = 24/27 (88%), Positives = 27/27 (100%)
Frame = -3 / +2
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW 406
+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 758 ADFHDYHHRLLYTKSGNYSSTFVYMDW 838
>gb|AY086287.1| Arabidopsis thaliana clone 23439 mRNA, complete sequence
Length = 1091
Score = 77.6 bits (163), Expect(2) = 1e-028
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGS 484
LWM+LRV++TVEAH GY FPWSPSNFLPLYGGS
Sbjct: 626 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGS 724
Score = 71.2 bits (149), Expect(2) = 1e-028
Identities = 24/27 (88%), Positives = 27/27 (100%)
Frame = -3 / +2
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW 406
+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 758 ADFHDYHHRLLYTKSGNYSSTFVYMDW 838
>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete
sequence
Length = 131743
Score = 76.7 bits (161), Expect(2) = 1e-028
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSD 481
LWM+LRV++TVEAH GY FPWSPSNFLPLYGG D
Sbjct: 48571 LWMMLRVIETVEAHCGYHFPWSPSNFLPLYGG*D 48672
Score = 71.6 bits (150), Expect(2) = 1e-028
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = -3 / +3
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW* 403
+DFHDYHHR+LYTKSGNY+STFVYMDW*
Sbjct: 48762 ADFHDYHHRLLYTKSGNYSSTFVYMDW* 48845
>gb|BP627387.1|BP627387 BP627387 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-50-O18 3',
mRNA sequence
Length = 434
Score = 127 bits (273), Expect = 2e-028
Identities = 46/55 (83%), Positives = 50/55 (90%)
Frame = -3 / -3
Query: 570 LRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LR + TVEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTK GNY+STFVYMDW
Sbjct: 432 LRAI*TVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKCGNYSSTFVYMDW 268
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 74.4 bits (156), Expect(2) = 6e-028
Identities = 29/34 (85%), Positives = 30/34 (88%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSD 481
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG D
Sbjct: 2279428 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGG*D 2279529
Score = 71.6 bits (150), Expect(2) = 6e-028
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = -3 / +3
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW* 403
+DFHDYHHR+LYTKSGNY+STFVYMDW*
Sbjct: 2279622 ADFHDYHHRLLYTKSGNYSSTFVYMDW* 2279705
>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I,
complete sequence
Length = 104830
Score = 74.4 bits (156), Expect(2) = 6e-028
Identities = 29/34 (85%), Positives = 30/34 (88%)
Frame = -3 / -1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSD 481
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG D
Sbjct: 64477 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGG*D 64376
Score = 71.6 bits (150), Expect(2) = 6e-028
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = -3 / -3
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW* 403
+DFHDYHHR+LYTKSGNY+STFVYMDW*
Sbjct: 64283 ADFHDYHHRLLYTKSGNYSSTFVYMDW* 64200
>gb|AU227233.1|AU227233 AU227233 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-89-L18 3',
mRNA sequence
Length = 417
Score = 124 bits (266), Expect = 2e-027
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = -3 / -3
Query: 552 VEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
VEAH GY FPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 415 VEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDW 269
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,129,198,435
Number of Sequences: 1013581
Number of extensions: 15098765
Number of successful extensions: 173344
Number of sequences better than 1.0e-020: 30
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 34365433565
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)