TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448753.2.1
(537 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP562290.2|BP562290 BP562290 RAFL9 Arabidopsis thaliana ... 148 2e-034
gb|AY060565.1| Arabidopsis thaliana AT5g61030/maf19_30 mRNA... 148 2e-034
gb|AY125548.1| Arabidopsis thaliana AT5g61030/maf19_30 mRNA... 148 2e-034
ref|NM_125496.2| Arabidopsis thaliana RNA binding / nucleic... 148 2e-034
ref|NM_106083.2| Arabidopsis thaliana RNA binding / nucleic... 120 5e-031
gb|BT002037.1| Arabidopsis thaliana putative RNA-binding pr... 120 5e-031
gb|BT006315.1| Arabidopsis thaliana At1g74230 mRNA, complet... 120 5e-031
gb|AY072361.1| Arabidopsis thaliana glycine-rich RNA-bindin... 126 6e-028
emb|AX507064.1| Sequence 1759 from Patent WO0216655 126 6e-028
gb|BT002197.1| Arabidopsis thaliana glycine-rich RNA-bindin... 126 6e-028
gb|AY085621.1| Arabidopsis thaliana clone 16314 mRNA, compl... 126 6e-028
emb|AJ002892.1|ATAJ2892 Arabidopsis thaliana mRNA for glyci... 126 6e-028
ref|NM_117459.2| Arabidopsis thaliana ATGRP2 (GLYCINE-RICH ... 126 6e-028
ref|NM_179046.1| Arabidopsis thaliana ATGRP2 (GLYCINE-RICH ... 126 6e-028
gb|BP855564.1|BP855564 BP855564 RAFL21 Arabidopsis thaliana... 121 7e-028
gb|AV534963.1|AV534963 AV534963 Arabidopsis thaliana flower... 126 8e-028
gb|CK120529.1|CK120529 207d08.p1 AtM1 Arabidopsis thaliana ... 126 8e-028
emb|X69377.1|ATGBP A.thaliana mRNA for glycine-rich RNA-bin... 126 8e-028
gb|N38173.1|N38173 19400 Lambda-PRL2 Arabidopsis thaliana c... 124 3e-027
emb|BX842223.1|CNS09YDW Arabidopsis thaliana Full-length cD... 122 1e-026
emb|BX825968.1|CNS0A683 Arabidopsis thaliana Full-length cD... 122 1e-026
ref|NM_180298.2| Arabidopsis thaliana RNA binding / nucleic... 122 1e-026
gb|BP846031.1|BP846031 BP846031 RAFL21 Arabidopsis thaliana... 120 4e-026
gb|BP825396.1|BP825396 BP825396 RAFL19 Arabidopsis thaliana... 120 5e-026
gb|BP834943.1|BP834943 BP834943 RAFL19 Arabidopsis thaliana... 120 5e-026
gb|BP836326.1|BP836326 BP836326 RAFL19 Arabidopsis thaliana... 119 7e-026
gb|BP843804.1|BP843804 BP843804 RAFL21 Arabidopsis thaliana... 119 7e-026
gb|BP844257.1|BP844257 BP844257 RAFL21 Arabidopsis thaliana... 119 7e-026
gb|BP860939.1|BP860939 BP860939 RAFL21 Arabidopsis thaliana... 117 2e-025
gb|BP867689.1|BP867689 BP867689 RAFL21 Arabidopsis thaliana... 109 5e-025
gb|CF651801.1|CF651801 15-L020580-066-004-N04-SP6P MPIZ-ADI... 116 6e-025
gb|AY070755.1| Arabidopsis thaliana AT3g23830/F14O13_2 mRNA... 116 6e-025
gb|AY097374.1| Arabidopsis thaliana AT3g23830/F14O13_2 mRNA... 116 6e-025
gb|AY085838.1| Arabidopsis thaliana clone 18903 mRNA, compl... 116 6e-025
emb|CQ804676.1| Sequence 1087 from Patent WO2004035798 116 6e-025
ref|NM_113288.2| Arabidopsis thaliana RNA binding / nucleic... 116 6e-025
gb|BP834761.1|BP834761 BP834761 RAFL19 Arabidopsis thaliana... 110 8e-025
gb|BP828882.1|BP828882 BP828882 RAFL19 Arabidopsis thaliana... 113 9e-025
gb|BP855883.1|BP855883 BP855883 RAFL21 Arabidopsis thaliana... 86 3e-024
gb|BP843983.1|BP843983 BP843983 RAFL21 Arabidopsis thaliana... 114 3e-024
gb|AV821887.1|AV821887 AV821887 RAFL4 Arabidopsis thaliana ... 113 4e-024
gb|AV824104.1|AV824104 AV824104 RAFL6 Arabidopsis thaliana ... 113 4e-024
gb|AV551113.1|AV551113 AV551113 Arabidopsis thaliana roots ... 112 8e-024
gb|BP866817.1|BP866817 BP866817 RAFL21 Arabidopsis thaliana... 110 4e-023
gb|AW004286.1|AW004286 701546194 A. thaliana, Columbia Col-... 110 5e-023
gb|BP844382.1|BP844382 BP844382 RAFL21 Arabidopsis thaliana... 73 9e-023
gb|BP844426.1|BP844426 BP844426 RAFL21 Arabidopsis thaliana... 92 3e-022
gb|BP560510.2|BP560510 BP560510 RAFL3 Arabidopsis thaliana ... 107 3e-022
gb|BP830955.1|BP830955 BP830955 RAFL19 Arabidopsis thaliana... 106 6e-022
gb|T04444.1|T04444 491 Lambda-PRL2 Arabidopsis thaliana cDN... 105 9e-022
gb|BP817577.1|BP817577 BP817577 RAFL19 Arabidopsis thaliana... 105 9e-022
gb|BP857973.1|BP857973 BP857973 RAFL21 Arabidopsis thaliana... 105 9e-022
gb|AV826500.1|AV826500 AV826500 RAFL8 Arabidopsis thaliana ... 105 1e-021
gb|AV828820.1|AV828820 AV828820 RAFL9 Arabidopsis thaliana ... 105 1e-021
gb|AV550103.1|AV550103 AV550103 Arabidopsis thaliana roots ... 105 1e-021
gb|BP823959.1|BP823959 BP823959 RAFL19 Arabidopsis thaliana... 105 1e-021
gb|BP840849.1|BP840849 BP840849 RAFL19 Arabidopsis thaliana... 105 1e-021
gb|BP856182.1|BP856182 BP856182 RAFL21 Arabidopsis thaliana... 105 1e-021
gb|AY054613.1| Arabidopsis thaliana Unknown protein (At3g26... 105 1e-021
gb|AF424613.1|AF424613 Arabidopsis thaliana AT3g26420/F20C1... 105 1e-021
gb|AY062535.1| Arabidopsis thaliana Unknown protein (F20C19... 105 1e-021
ref|NM_113550.3| Arabidopsis thaliana carboxylic ester hydr... 105 1e-021
gb|AA394523.1|AA394523 26106 Lambda-PRL2 Arabidopsis thalia... 105 2e-021
gb|BE037790.1|BE037790 AA04B11 AA Arabidopsis thaliana cDNA... 105 2e-021
gb|BE038087.1|BE038087 AA08F12 AA Arabidopsis thaliana cDNA... 105 2e-021
gb|BE038941.1|BE038941 AB07E07 AB Arabidopsis thaliana cDNA... 105 2e-021
gb|BE039243.1|BE039243 AC01A07 AC Arabidopsis thaliana cDNA... 105 2e-021
gb|AV824440.1|AV824440 AV824440 RAFL6 Arabidopsis thaliana ... 105 2e-021
gb|AV827790.1|AV827790 AV827790 RAFL9 Arabidopsis thaliana ... 105 2e-021
gb|CB258009.1|CB258009 79-E011802-014-004-M20-T7R MPIZ-ADIS... 105 2e-021
gb|AV526080.1|AV526080 AV526080 Arabidopsis thaliana aboveg... 105 2e-021
gb|AV549060.1|AV549060 AV549060 Arabidopsis thaliana roots ... 105 2e-021
gb|AV550949.1|AV550949 AV550949 Arabidopsis thaliana roots ... 105 2e-021
gb|AV551092.1|AV551092 AV551092 Arabidopsis thaliana roots ... 105 2e-021
gb|AV552957.1|AV552957 AV552957 Arabidopsis thaliana roots ... 105 2e-021
gb|AV553315.1|AV553315 AV553315 Arabidopsis thaliana roots ... 105 2e-021
gb|AV553433.1|AV553433 AV553433 Arabidopsis thaliana roots ... 105 2e-021
gb|AV554341.1|AV554341 AV554341 Arabidopsis thaliana roots ... 105 2e-021
gb|CK117959.1|CK117959 209c06.p1 AtM1 Arabidopsis thaliana ... 105 2e-021
gb|CK118082.1|CK118082 218d07.p1 AtM1 Arabidopsis thaliana ... 105 2e-021
gb|CK118291.1|CK118291 217l10.p1 AtM1 Arabidopsis thaliana ... 105 2e-021
gb|CK119626.1|CK119626 211e18.p1 AtM1 Arabidopsis thaliana ... 105 2e-021
gb|BP562990.1|BP562990 BP562990 RAFL17 Arabidopsis thaliana... 105 2e-021
gb|BP561156.2|BP561156 BP561156 RAFL6 Arabidopsis thaliana ... 105 2e-021
gb|CB253428.1|CB253428 02-E010740-019-001-C13-T7R MPIZ-ADIS... 105 2e-021
gb|BP811879.1|BP811879 BP811879 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP813869.1|BP813869 BP813869 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP816707.1|BP816707 BP816707 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP817687.1|BP817687 BP817687 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP818953.1|BP818953 BP818953 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP823305.1|BP823305 BP823305 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP828510.1|BP828510 BP828510 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP829050.1|BP829050 BP829050 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP829126.1|BP829126 BP829126 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP834466.1|BP834466 BP834466 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP836311.1|BP836311 BP836311 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP839641.1|BP839641 BP839641 RAFL19 Arabidopsis thaliana... 105 2e-021
gb|BP841652.1|BP841652 BP841652 RAFL21 Arabidopsis thaliana... 105 2e-021
gb|BP842179.1|BP842179 BP842179 RAFL21 Arabidopsis thaliana... 105 2e-021
gb|BP847598.1|BP847598 BP847598 RAFL21 Arabidopsis thaliana... 105 2e-021
gb|BP857958.1|BP857958 BP857958 RAFL21 Arabidopsis thaliana... 105 2e-021
gb|BP857981.1|BP857981 BP857981 RAFL21 Arabidopsis thaliana... 105 2e-021
gb|BP859297.1|BP859297 BP859297 RAFL21 Arabidopsis thaliana... 105 2e-021
gb|BP864431.1|BP864431 BP864431 RAFL21 Arabidopsis thaliana... 105 2e-021
gb|BP868315.1|BP868315 BP868315 RAFL21 Arabidopsis thaliana... 105 2e-021
gb|BP868718.1|BP868718 BP868718 RAFL21 Arabidopsis thaliana... 105 2e-021
gb|BP868849.1|BP868849 BP868849 RAFL21 Arabidopsis thaliana... 105 2e-021
gb|L00648.1|ATHRBPA Arabidopsis thaliana RNA-binding protei... 105 2e-021
gb|AY054284.1| Arabidopsis thaliana At2g21660/F2G1.7 mRNA, ... 105 2e-021
gb|AF428381.1|AF428381 Arabidopsis thaliana At2g22292/F2G1.... 105 2e-021
emb|AX412520.1| Sequence 284 from Patent WO0222675 105 2e-021
emb|AX412741.1| Sequence 505 from Patent WO0222675 105 2e-021
emb|AX507112.1| Sequence 1807 from Patent WO0216655 105 2e-021
gb|AY085214.1| Arabidopsis thaliana clone 13879 mRNA, compl... 105 2e-021
gb|BT008667.1| Arabidopsis thaliana clone RAFL17-07-B10 (R5... 105 2e-021
emb|BX821551.1|CNS0A92D Arabidopsis thaliana Full-length cD... 105 2e-021
emb|BX821373.1|CNS0A98T Arabidopsis thaliana Full-length cD... 105 2e-021
emb|BX819936.1|CNS0AAC9 Arabidopsis thaliana Full-length cD... 105 2e-021
emb|Z14987.1|ATGRP7 A.thaliana mRNA for glycine rich protein 105 2e-021
ref|NM_127738.2| Arabidopsis thaliana ATGRP7; RNA binding A... 105 2e-021
ref|NM_179686.1| Arabidopsis thaliana ATGRP7; RNA binding A... 105 2e-021
gb|AV829891.1|AV829891 AV829891 RAFL9 Arabidopsis thaliana ... 104 2e-021
gb|BP560657.2|BP560657 BP560657 RAFL4 Arabidopsis thaliana ... 104 2e-021
gb|BP834687.1|BP834687 BP834687 RAFL19 Arabidopsis thaliana... 104 2e-021
gb|BP863166.1|BP863166 BP863166 RAFL21 Arabidopsis thaliana... 104 2e-021
gb|BP799236.1|BP799236 BP799236 RAFL14 Arabidopsis thaliana... 91 2e-021
gb|CB258318.1|CB258318 34-E011081-014-003-C10-T7R MPIZ-ADIS... 104 3e-021
gb|BX837626.1|BX837626 BX837626 Arabidopsis thaliana Hormon... 104 3e-021
gb|CK121470.1|CK121470 202p17.p1 AtM1 Arabidopsis thaliana ... 104 3e-021
gb|BP843245.1|BP843245 BP843245 RAFL21 Arabidopsis thaliana... 104 3e-021
gb|BP865939.1|BP865939 BP865939 RAFL21 Arabidopsis thaliana... 104 3e-021
gb|AY057476.1| Arabidopsis thaliana AT3g26420/F20C19_14 mRN... 104 3e-021
gb|AY072457.1| Arabidopsis thaliana unknown protein (At3g26... 104 3e-021
gb|AY090295.1| Arabidopsis thaliana AT3g26420/F20C19_14 mRN... 104 3e-021
emb|CQ804398.1| Sequence 809 from Patent WO2004035798 104 3e-021
dbj|AK221725.1| Arabidopsis thaliana mRNA for RNA-binding p... 104 3e-021
ref|NM_113549.3| Arabidopsis thaliana ARRZ-1A; RNA binding ... 104 3e-021
gb|H36603.1|H36603 14271 Lambda-PRL2 Arabidopsis thaliana c... 103 4e-021
gb|N37253.1|N37253 18463 Lambda-PRL2 Arabidopsis thaliana c... 103 4e-021
gb|BP819152.1|BP819152 BP819152 RAFL19 Arabidopsis thaliana... 103 4e-021
gb|BP822308.1|BP822308 BP822308 RAFL19 Arabidopsis thaliana... 103 4e-021
gb|BP846320.1|BP846320 BP846320 RAFL21 Arabidopsis thaliana... 103 4e-021
emb|BX822659.1|CNS0A601 Arabidopsis thaliana Full-length cD... 103 4e-021
gb|R90325.1|R90325 16680 Lambda-PRL2 Arabidopsis thaliana c... 103 6e-021
emb|BX821372.1|CNS0A98S Arabidopsis thaliana Full-length cD... 103 6e-021
gb|U74174.1|U74174 ATU74174 NaCl-treated Arabidopsis subtra... 103 6e-021
gb|BP814608.1|BP814608 BP814608 RAFL19 Arabidopsis thaliana... 103 6e-021
gb|BP862844.1|BP862844 BP862844 RAFL21 Arabidopsis thaliana... 103 6e-021
dbj|AB006696.1| Arabidopsis thaliana genomic DNA, chromosom... 57 7e-021
gb|R30618.1|R30618 13223 Lambda-PRL2 Arabidopsis thaliana c... 102 8e-021
gb|T22895.1|T22895 4903 Lambda-PRL2 Arabidopsis thaliana cD... 102 8e-021
gb|T88648.1|T88648 12344 Lambda-PRL2 Arabidopsis thaliana c... 102 8e-021
gb|BP797991.1|BP797991 BP797991 RAFL14 Arabidopsis thaliana... 102 8e-021
>gb|BP562290.2|BP562290 BP562290 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-71-B10 5',
mRNA sequence
Length = 473
Score = 148 bits (317), Expect = 2e-034
Identities = 55/97 (56%), Positives = 77/97 (79%)
Frame = +2 / +1
Query: 101 SNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGF 280
S+ S++QAIRCMSSSKLF+GG++Y D+ SLR+ F KYG+V++ ++ILDRE+GRSRGFGF
Sbjct: 142 SSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGF 321
Query: 281 ITYTXXXXXXXXITAMDGKTLDGRNIRVNHANERTGG 391
+T+T I A+DG+ L GR ++VN+AN+RT G
Sbjct: 322 VTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSG 432
>gb|AY060565.1| Arabidopsis thaliana AT5g61030/maf19_30 mRNA, complete cds
Length = 1146
Score = 148 bits (317), Expect = 2e-034
Identities = 55/97 (56%), Positives = 77/97 (79%)
Frame = +2 / +1
Query: 101 SNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGF 280
S+ S++QAIRCMSSSKLF+GG++Y D+ SLR+ F KYG+V++ ++ILDRE+GRSRGFGF
Sbjct: 139 SSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGF 318
Query: 281 ITYTXXXXXXXXITAMDGKTLDGRNIRVNHANERTGG 391
+T+T I A+DG+ L GR ++VN+AN+RT G
Sbjct: 319 VTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSG 429
>gb|AY125548.1| Arabidopsis thaliana AT5g61030/maf19_30 mRNA, complete cds
Length = 930
Score = 148 bits (317), Expect = 2e-034
Identities = 55/97 (56%), Positives = 77/97 (79%)
Frame = +2 / +1
Query: 101 SNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGF 280
S+ S++QAIRCMSSSKLF+GG++Y D+ SLR+ F KYG+V++ ++ILDRE+GRSRGFGF
Sbjct: 76 SSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGF 255
Query: 281 ITYTXXXXXXXXITAMDGKTLDGRNIRVNHANERTGG 391
+T+T I A+DG+ L GR ++VN+AN+RT G
Sbjct: 256 VTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSG 366
>ref|NM_125496.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G61030
mRNA, complete cds
Length = 1147
Score = 148 bits (317), Expect = 2e-034
Identities = 55/97 (56%), Positives = 77/97 (79%)
Frame = +2 / +1
Query: 101 SNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGF 280
S+ S++QAIRCMSSSKLF+GG++Y D+ SLR+ F KYG+V++ ++ILDRE+GRSRGFGF
Sbjct: 139 SSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGF 318
Query: 281 ITYTXXXXXXXXITAMDGKTLDGRNIRVNHANERTGG 391
+T+T I A+DG+ L GR ++VN+AN+RT G
Sbjct: 319 VTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSG 429
>ref|NM_106083.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G74230
mRNA, complete cds
Length = 1165
Score = 120 bits (256), Expect(2) = 5e-031
Identities = 46/83 (55%), Positives = 66/83 (79%)
Frame = +2 / +1
Query: 44 MMLANKLGGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQV 223
M +K+G L +S +++ S+ Q+IRCMSSSK+FVGG+SY TD+ LR+ F+KYG+V
Sbjct: 70 MAFLSKVGRLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEV 249
Query: 224 IEAKIILDRESGRSRGFGFITYT 292
++AKII+DRE+GRSRGF F+T+T
Sbjct: 250 VDAKIIVDRETGRSRGFAFVTFT 318
Score = 36.3 bits (73), Expect(2) = 5e-031
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2 / +1
Query: 326 MDGKTLDGRNIRVNHANERTGGF 394
+DG+ L GR IRVN+A ER GF
Sbjct: 349 LDGQDLHGRRIRVNYATERGSGF 417
>gb|BT002037.1| Arabidopsis thaliana putative RNA-binding protein (At1g74230) mRNA,
complete cds
Length = 1132
Score = 120 bits (256), Expect(2) = 5e-031
Identities = 46/83 (55%), Positives = 66/83 (79%)
Frame = +2 / +1
Query: 44 MMLANKLGGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQV 223
M +K+G L +S +++ S+ Q+IRCMSSSK+FVGG+SY TD+ LR+ F+KYG+V
Sbjct: 70 MAFLSKVGRLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEV 249
Query: 224 IEAKIILDRESGRSRGFGFITYT 292
++AKII+DRE+GRSRGF F+T+T
Sbjct: 250 VDAKIIVDRETGRSRGFAFVTFT 318
Score = 36.3 bits (73), Expect(2) = 5e-031
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2 / +1
Query: 326 MDGKTLDGRNIRVNHANERTGGF 394
+DG+ L GR IRVN+A ER GF
Sbjct: 349 LDGQDLHGRRIRVNYATERGSGF 417
>gb|BT006315.1| Arabidopsis thaliana At1g74230 mRNA, complete cds
Length = 870
Score = 120 bits (256), Expect(2) = 5e-031
Identities = 46/83 (55%), Positives = 66/83 (79%)
Frame = +2 / +1
Query: 44 MMLANKLGGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQV 223
M +K+G L +S +++ S+ Q+IRCMSSSK+FVGG+SY TD+ LR+ F+KYG+V
Sbjct: 1 MAFLSKVGRLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEV 180
Query: 224 IEAKIILDRESGRSRGFGFITYT 292
++AKII+DRE+GRSRGF F+T+T
Sbjct: 181 VDAKIIVDRETGRSRGFAFVTFT 249
Score = 36.3 bits (73), Expect(2) = 5e-031
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2 / +1
Query: 326 MDGKTLDGRNIRVNHANERTGGF 394
+DG+ L GR IRVN+A ER GF
Sbjct: 280 LDGQDLHGRRIRVNYATERGSGF 348
>gb|AY072361.1| Arabidopsis thaliana glycine-rich RNA-binding protein AtGRP2 - like
(At4g13850) mRNA, complete cds
Length = 686
Score = 126 bits (270), Expect = 6e-028
Identities = 53/106 (50%), Positives = 75/106 (70%)
Frame = +2 / +1
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 91 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 270
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVNHANER 382
DRE+GRSRGFGF+ + I+ MDGK L+GR+IRVN AN+R
Sbjct: 271 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 408
>emb|AX507064.1| Sequence 1759 from Patent WO0216655
Length = 477
Score = 126 bits (270), Expect = 6e-028
Identities = 53/106 (50%), Positives = 75/106 (70%)
Frame = +2 / +1
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 25 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 204
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVNHANER 382
DRE+GRSRGFGF+ + I+ MDGK L+GR+IRVN AN+R
Sbjct: 205 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 342
>gb|BT002197.1| Arabidopsis thaliana glycine-rich RNA-binding protein AtGRP2 - like
(At4g13850) mRNA, complete cds
Length = 581
Score = 126 bits (270), Expect = 6e-028
Identities = 53/106 (50%), Positives = 75/106 (70%)
Frame = +2 / +1
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 25 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 204
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVNHANER 382
DRE+GRSRGFGF+ + I+ MDGK L+GR+IRVN AN+R
Sbjct: 205 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 342
>gb|AY085621.1| Arabidopsis thaliana clone 16314 mRNA, complete sequence
Length = 688
Score = 126 bits (270), Expect = 6e-028
Identities = 53/106 (50%), Positives = 75/106 (70%)
Frame = +2 / +1
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 94 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 273
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVNHANER 382
DRE+GRSRGFGF+ + I+ MDGK L+GR+IRVN AN+R
Sbjct: 274 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 411
>emb|AJ002892.1|ATAJ2892 Arabidopsis thaliana mRNA for glycine-rich RNA-binding protein
(AtGRP2)
Length = 675
Score = 126 bits (270), Expect = 6e-028
Identities = 53/106 (50%), Positives = 75/106 (70%)
Frame = +2 / +3
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 78 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 257
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVNHANER 382
DRE+GRSRGFGF+ + I+ MDGK L+GR+IRVN AN+R
Sbjct: 258 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 395
>ref|NM_117459.2| Arabidopsis thaliana ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2);
RNA binding / nucleic acid binding AT4G13850 (ATGRP2)
transcript variant AT4G13850.1 mRNA, complete cds
Length = 691
Score = 126 bits (270), Expect = 6e-028
Identities = 53/106 (50%), Positives = 75/106 (70%)
Frame = +2 / +1
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 94 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 273
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVNHANER 382
DRE+GRSRGFGF+ + I+ MDGK L+GR+IRVN AN+R
Sbjct: 274 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 411
>ref|NM_179046.1| Arabidopsis thaliana ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2);
RNA binding / nucleic acid binding AT4G13850 (ATGRP2)
transcript variant AT4G13850.2 mRNA, complete cds
Length = 687
Score = 126 bits (270), Expect = 6e-028
Identities = 53/106 (50%), Positives = 75/106 (70%)
Frame = +2 / +1
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 94 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 273
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVNHANER 382
DRE+GRSRGFGF+ + I+ MDGK L+GR+IRVN AN+R
Sbjct: 274 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 411
>gb|BP855564.1|BP855564 BP855564 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-27-A21 5',
mRNA sequence
Length = 404
Score = 121 bits (258), Expect(2) = 7e-028
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = +2 / +3
Query: 134 MSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXX 313
+ S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+DRE+GRSRG GF+ +
Sbjct: 159 LMSTKLFIGGLSWGTDDASLRDAFAHFGNVVDAKVIVDRETGRSRGLGFVNFNDEGAATA 338
Query: 314 XITAMDGKTLDGRNIRVNHANE 379
I+ MDGK L+GR+IRVN AN+
Sbjct: 339 AISEMDGKELNGRHIRVNPAND 404
Score = 24.4 bits (47), Expect(2) = 7e-028
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2 / +1
Query: 44 MMLANKLGGLLKNATSSKSS 103
M NKLGGLL+ SS +
Sbjct: 67 MAFCNKLGGLLRQNISSNGN 126
>gb|AV534963.1|AV534963 AV534963 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB088g03F 3', mRNA sequence
Length = 551
Score = 126 bits (269), Expect = 8e-028
Identities = 49/83 (59%), Positives = 65/83 (78%)
Frame = +2 / -2
Query: 134 MSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXX 313
+ S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+DRE+GRSRGFGF+ +
Sbjct: 529 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATA 350
Query: 314 XITAMDGKTLDGRNIRVNHANER 382
I+ MDGK L+GR+IRVN AN+R
Sbjct: 349 AISEMDGKELNGRHIRVNPANDR 281
>gb|CK120529.1|CK120529 207d08.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011D08207
5-PRIME, mRNA sequence
Length = 363
Score = 126 bits (269), Expect = 8e-028
Identities = 49/83 (59%), Positives = 65/83 (78%)
Frame = +2 / +3
Query: 134 MSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXX 313
+ S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+DRE+GRSRGFGF+ +
Sbjct: 39 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATA 218
Query: 314 XITAMDGKTLDGRNIRVNHANER 382
I+ MDGK L+GR+IRVN AN+R
Sbjct: 219 AISEMDGKELNGRHIRVNPANDR 287
>emb|X69377.1|ATGBP A.thaliana mRNA for glycine-rich RNA-binding protein
Length = 562
Score = 126 bits (269), Expect = 8e-028
Identities = 49/83 (59%), Positives = 65/83 (78%)
Frame = +2 / +2
Query: 134 MSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXX 313
+ S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+DRE+GRSRGFGF+ +
Sbjct: 38 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATA 217
Query: 314 XITAMDGKTLDGRNIRVNHANER 382
I+ MDGK L+GR+IRVN AN+R
Sbjct: 218 AISEMDGKELNGRHIRVNPANDR 286
>gb|N38173.1|N38173 19400 Lambda-PRL2 Arabidopsis thaliana cDNA clone 220F6T7, mRNA
sequence
Length = 540
Score = 124 bits (265), Expect = 3e-027
Identities = 48/83 (57%), Positives = 64/83 (77%)
Frame = +2 / +3
Query: 134 MSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXX 313
+ S+KLF+GGLS+GTDD SLRD F +G V++AK+I+DRE+GRSRGFGF+ +
Sbjct: 129 LMSTKLFIGGLSWGTDDASLRDAFXHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATA 308
Query: 314 XITAMDGKTLDGRNIRVNHANER 382
I+ MDGK L+GR+IRVN AN+R
Sbjct: 309 AISEMDGKELNGRHIRVNPANDR 377
>emb|BX842223.1|CNS09YDW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL74ZB12 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 602
Score = 122 bits (260), Expect = 1e-026
Identities = 57/130 (43%), Positives = 76/130 (58%)
Frame = +2 / +3
Query: 8 LSSFPSVSQLGTMMLANKLGGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDH 187
+S FPS+ L G L + + S + ++ SSKLFVGGLS+GTDD
Sbjct: 27 ISPFPSLRHLEMAFCNKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDS 206
Query: 188 SLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVN 367
SL+ F +G+V EA +I DRE+GRSRGFGF++++ I MDGK L+GR IRVN
Sbjct: 207 SLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVN 386
Query: 368 HANERTGGFR 397
A ER+ R
Sbjct: 387 LATERSSAPR 416
>emb|BX825968.1|CNS0A683 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL76ZH01 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 658
Score = 122 bits (260), Expect = 1e-026
Identities = 57/130 (43%), Positives = 76/130 (58%)
Frame = +2 / +1
Query: 8 LSSFPSVSQLGTMMLANKLGGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDH 187
+S FPS+ L G L + + S + ++ SSKLFVGGLS+GTDD
Sbjct: 31 ISPFPSLRHLEMAFCNKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDS 210
Query: 188 SLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVN 367
SL+ F +G+V EA +I DRE+GRSRGFGF++++ I MDGK L+GR IRVN
Sbjct: 211 SLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVN 390
Query: 368 HANERTGGFR 397
A ER+ R
Sbjct: 391 LATERSSAPR 420
>ref|NM_180298.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT3G23830
transcript variant AT3G23830.2 mRNA, complete cds
Length = 759
Score = 122 bits (260), Expect = 1e-026
Identities = 57/130 (43%), Positives = 76/130 (58%)
Frame = +2 / +1
Query: 8 LSSFPSVSQLGTMMLANKLGGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDH 187
+S FPS+ L G L + + S + ++ SSKLFVGGLS+GTDD
Sbjct: 31 ISPFPSLRHLEMAFCNKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDS 210
Query: 188 SLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVN 367
SL+ F +G+V EA +I DRE+GRSRGFGF++++ I MDGK L+GR IRVN
Sbjct: 211 SLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVN 390
Query: 368 HANERTGGFR 397
A ER+ R
Sbjct: 391 LATERSSAPR 420
>gb|BP846031.1|BP846031 BP846031 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-95-J04 5',
mRNA sequence
Length = 402
Score = 120 bits (257), Expect = 4e-026
Identities = 51/104 (49%), Positives = 72/104 (69%)
Frame = +2 / +3
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 90 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 269
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVNHAN 376
DRE+GRSRG GF+ + I+ MDGK L+GR+IRVN AN
Sbjct: 270 DRETGRSRGLGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 401
>gb|BP825396.1|BP825396 BP825396 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-68-H03 5',
mRNA sequence
Length = 383
Score = 120 bits (256), Expect = 5e-026
Identities = 46/83 (55%), Positives = 66/83 (79%)
Frame = +2 / +3
Query: 44 MMLANKLGGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQV 223
M +K+G L +S +++ S+ Q+IRCMSSSK+FVGG+SY TD+ LR+ F+KYG+V
Sbjct: 69 MAFLSKVGRLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEV 248
Query: 224 IEAKIILDRESGRSRGFGFITYT 292
++AKII+DRE+GRSRGF F+T+T
Sbjct: 249 VDAKIIVDRETGRSRGFAFVTFT 317
>gb|BP834943.1|BP834943 BP834943 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-11-N19 5',
mRNA sequence
Length = 379
Score = 120 bits (256), Expect = 5e-026
Identities = 46/83 (55%), Positives = 66/83 (79%)
Frame = +2 / +3
Query: 44 MMLANKLGGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQV 223
M +K+G L +S +++ S+ Q+IRCMSSSK+FVGG+SY TD+ LR+ F+KYG+V
Sbjct: 72 MAFLSKVGRLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEV 251
Query: 224 IEAKIILDRESGRSRGFGFITYT 292
++AKII+DRE+GRSRGF F+T+T
Sbjct: 252 VDAKIIVDRETGRSRGFAFVTFT 320
>gb|BP836326.1|BP836326 BP836326 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-16-B16 5',
mRNA sequence
Length = 394
Score = 119 bits (255), Expect = 7e-026
Identities = 50/101 (49%), Positives = 71/101 (70%)
Frame = +2 / +1
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 85 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 264
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVN 367
DRE+GRSRGFGF+ + I+ MDGK L+GR+IRVN
Sbjct: 265 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 387
>gb|BP843804.1|BP843804 BP843804 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-88-B09 5',
mRNA sequence
Length = 396
Score = 119 bits (255), Expect = 7e-026
Identities = 50/101 (49%), Positives = 71/101 (70%)
Frame = +2 / +3
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 90 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 269
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVN 367
DRE+GRSRGFGF+ + I+ MDGK L+GR+IRVN
Sbjct: 270 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 392
>gb|BP844257.1|BP844257 BP844257 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-89-K24 5',
mRNA sequence
Length = 393
Score = 119 bits (255), Expect = 7e-026
Identities = 50/101 (49%), Positives = 71/101 (70%)
Frame = +2 / +1
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 91 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 270
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVN 367
DRE+GRSRGFGF+ + I+ MDGK L+GR+IRVN
Sbjct: 271 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 393
>gb|BP860939.1|BP860939 BP860939 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-45-M02 5',
mRNA sequence
Length = 372
Score = 117 bits (251), Expect = 2e-025
Identities = 44/78 (56%), Positives = 60/78 (76%)
Frame = +2 / +3
Query: 101 SNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGF 280
S+ S++QAIRCMSSSKLF+GG++Y D+ SLR+ F KYG+V++ ++I DRE+GRSRGFGF
Sbjct: 138 SSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVIWDRETGRSRGFGF 317
Query: 281 ITYTXXXXXXXXITAMDG 334
+T+T I A DG
Sbjct: 318 VTFTSSEAASSAIQAWDG 371
>gb|BP867689.1|BP867689 BP867689 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-81-N24 5',
mRNA sequence
Length = 400
Score = 109 bits (233), Expect(2) = 5e-025
Identities = 43/83 (51%), Positives = 64/83 (77%)
Frame = +2 / +3
Query: 44 MMLANKLGGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQV 223
M +K+G L +S +++ S+ Q+IR MSSSK+FVGG+SY TD+ LR+ F+KYG+V
Sbjct: 69 MAFLSKVGRLFSQTSSHVTASSSMLQSIRGMSSSKIFVGGISYSTDELGLREAFSKYGEV 248
Query: 224 IEAKIILDRESGRSRGFGFITYT 292
++AKI++DRE+GRSRG F+T+T
Sbjct: 249 VDAKIMVDRETGRSRGLAFVTFT 317
Score = 26.3 bits (51), Expect(2) = 5e-025
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2 / +3
Query: 329 DGKTLDGRNIRVNHA 373
DG+ L GR IRVN+A
Sbjct: 351 DGQDLHGRRIRVNYA 395
>gb|CF651801.1|CF651801 15-L020580-066-004-N04-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001N044Q 5-PRIME, mRNA sequence
Length = 694
Score = 116 bits (248), Expect = 6e-025
Identities = 49/86 (56%), Positives = 61/86 (70%)
Frame = +2 / +3
Query: 140 SSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXI 319
SSKLFVGGLS+GTDD SL+ F +G+V EA +I DRE+GRSRGFGF++++ I
Sbjct: 180 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 359
Query: 320 TAMDGKTLDGRNIRVNHANERTGGFR 397
MDGK L+GR IRVN A ER+ R
Sbjct: 360 KEMDGKELNGRQIRVNLATERSSAPR 437
>gb|AY070755.1| Arabidopsis thaliana AT3g23830/F14O13_2 mRNA, complete cds
Length = 709
Score = 116 bits (248), Expect = 6e-025
Identities = 49/86 (56%), Positives = 61/86 (70%)
Frame = +2 / +3
Query: 140 SSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXI 319
SSKLFVGGLS+GTDD SL+ F +G+V EA +I DRE+GRSRGFGF++++ I
Sbjct: 195 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 374
Query: 320 TAMDGKTLDGRNIRVNHANERTGGFR 397
MDGK L+GR IRVN A ER+ R
Sbjct: 375 KEMDGKELNGRQIRVNLATERSSAPR 452
>gb|AY097374.1| Arabidopsis thaliana AT3g23830/F14O13_2 mRNA, complete cds
Length = 411
Score = 116 bits (248), Expect = 6e-025
Identities = 49/86 (56%), Positives = 61/86 (70%)
Frame = +2 / +1
Query: 140 SSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXI 319
SSKLFVGGLS+GTDD SL+ F +G+V EA +I DRE+GRSRGFGF++++ I
Sbjct: 100 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 279
Query: 320 TAMDGKTLDGRNIRVNHANERTGGFR 397
MDGK L+GR IRVN A ER+ R
Sbjct: 280 KEMDGKELNGRQIRVNLATERSSAPR 357
>gb|AY085838.1| Arabidopsis thaliana clone 18903 mRNA, complete sequence
Length = 711
Score = 116 bits (248), Expect = 6e-025
Identities = 49/86 (56%), Positives = 61/86 (70%)
Frame = +2 / +2
Query: 140 SSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXI 319
SSKLFVGGLS+GTDD SL+ F +G+V EA +I DRE+GRSRGFGF++++ I
Sbjct: 197 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 376
Query: 320 TAMDGKTLDGRNIRVNHANERTGGFR 397
MDGK L+GR IRVN A ER+ R
Sbjct: 377 KEMDGKELNGRQIRVNLATERSSAPR 454
>emb|CQ804676.1| Sequence 1087 from Patent WO2004035798
Length = 411
Score = 116 bits (248), Expect = 6e-025
Identities = 49/86 (56%), Positives = 61/86 (70%)
Frame = +2 / +1
Query: 140 SSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXI 319
SSKLFVGGLS+GTDD SL+ F +G+V EA +I DRE+GRSRGFGF++++ I
Sbjct: 100 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 279
Query: 320 TAMDGKTLDGRNIRVNHANERTGGFR 397
MDGK L+GR IRVN A ER+ R
Sbjct: 280 KEMDGKELNGRQIRVNLATERSSAPR 357
>ref|NM_113288.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT3G23830
transcript variant AT3G23830.1 mRNA, complete cds
Length = 792
Score = 116 bits (248), Expect = 6e-025
Identities = 49/86 (56%), Positives = 61/86 (70%)
Frame = +2 / +1
Query: 140 SSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXI 319
SSKLFVGGLS+GTDD SL+ F +G+V EA +I DRE+GRSRGFGF++++ I
Sbjct: 196 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 375
Query: 320 TAMDGKTLDGRNIRVNHANERTGGFR 397
MDGK L+GR IRVN A ER+ R
Sbjct: 376 KEMDGKELNGRQIRVNLATERSSAPR 453
>gb|BP834761.1|BP834761 BP834761 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-11-E21 5',
mRNA sequence
Length = 380
Score = 110 bits (235), Expect(2) = 8e-025
Identities = 42/74 (56%), Positives = 57/74 (77%)
Frame = +2 / +2
Query: 134 MSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXX 313
+ S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+DRE+GRSRGFGF+ +
Sbjct: 158 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATA 337
Query: 314 XITAMDGKTLDGRN 355
I+ MDGK L+GR+
Sbjct: 338 AISEMDGKELNGRH 379
Score = 24.4 bits (47), Expect(2) = 8e-025
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2 / +3
Query: 44 MMLANKLGGLLKNATSSKSS 103
M NKLGGLL+ SS +
Sbjct: 66 MAFCNKLGGLLRQNISSNGN 125
>gb|BP828882.1|BP828882 BP828882 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-80-E15 5',
mRNA sequence
Length = 387
Score = 113 bits (241), Expect(2) = 9e-025
Identities = 44/76 (57%), Positives = 58/76 (76%)
Frame = +2 / +1
Query: 140 SSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXI 319
S+KLF+GGLS+GTDD SLRD A +G V++AK+I+DRE+GRSRG GF+ + I
Sbjct: 160 STKLFIGGLSWGTDDASLRDALAHFGDVVDAKVIVDRETGRSRGLGFVNFNDEGAATAAI 339
Query: 320 TAMDGKTLDGRNIRVN 367
+ MDGK L+GR+IRVN
Sbjct: 340 SEMDGKELNGRHIRVN 387
Score = 21.7 bits (41), Expect(2) = 9e-025
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2 / +1
Query: 44 MMLANKLGGLLKNATSSKSS 103
M NKLGGL + SS +
Sbjct: 61 MAFCNKLGGLWRQNISSNGN 120
>gb|BP855883.1|BP855883 BP855883 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-28-C14 5',
mRNA sequence
Length = 389
Score = 86.3 bits (182), Expect(3) = 3e-024
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +2 / +1
Query: 191 LRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVN 367
LRD FA +G V++AK+I+DRE+GRSRGFGF+ + I+ MDGK L+GR+IRVN
Sbjct: 211 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATGAISEMDGKELNGRHIRVN 387
Score = 39.6 bits (80), Expect(3) = 3e-024
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +2 / +2
Query: 113 VYQAIRCMSSSKLFVGGLSYGTDDHS 190
VY I + S+KLF+GGLS+GTDD S
Sbjct: 134 VYARISRLMSTKLFIGGLSWGTDDAS 211
Score = 24.4 bits (47), Expect(3) = 3e-024
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2 / +3
Query: 44 MMLANKLGGLLKNATSSKSS 103
M NKLGGLL+ SS +
Sbjct: 63 MAFCNKLGGLLRQNISSNGN 122
>gb|BP843983.1|BP843983 BP843983 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-88-K22 5',
mRNA sequence
Length = 386
Score = 114 bits (243), Expect = 3e-024
Identities = 48/100 (48%), Positives = 69/100 (69%)
Frame = +2 / +3
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD A +G V++AK+I+
Sbjct: 87 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDALAHFGDVVDAKVIV 266
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRV 364
DRE+GRSRGFGF+ + I+ MDGK L+GR+IRV
Sbjct: 267 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 386
>gb|AV821887.1|AV821887 AV821887 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-J21 5',
mRNA sequence
Length = 638
Score = 113 bits (242), Expect = 4e-024
Identities = 48/100 (48%), Positives = 65/100 (65%)
Frame = +2 / +2
Query: 92 SKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRG 271
S S+ + A++ M S + FVGGL++ TDD +L FA+YG VI++KII DRE+GRSRG
Sbjct: 32 SLRSSFQISMAVQVMLSIRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRG 211
Query: 272 FGFITYTXXXXXXXXITAMDGKTLDGRNIRVNHANERTGG 391
FGF+T+ I M+G+ LDGR+I VN A R G
Sbjct: 212 FGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSG 331
>gb|AV824104.1|AV824104 AV824104 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-13-I20 5',
mRNA sequence
Length = 645
Score = 113 bits (242), Expect = 4e-024
Identities = 48/86 (55%), Positives = 60/86 (69%)
Frame = +2 / +2
Query: 140 SSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXI 319
SSKLFVGGLS+GTDD SL+ +G+V EA +I DRE+GRSRGFGF++++ I
Sbjct: 197 SSKLFVGGLSWGTDDSSLKQALTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 376
Query: 320 TAMDGKTLDGRNIRVNHANERTGGFR 397
MDGK L+GR IRVN A ER+ R
Sbjct: 377 KEMDGKELNGRQIRVNLATERSSAPR 454
>gb|AV551113.1|AV551113 AV551113 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ121d06R 5', mRNA sequence
Length = 312
Score = 112 bits (240), Expect = 8e-024
Identities = 41/64 (64%), Positives = 57/64 (89%)
Frame = +2 / +2
Query: 101 SNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGF 280
S+ S++QAIRCMSSSKLF+GG++Y D+ SLR+ F KYG+V++ ++ILDRE+GRSRGFGF
Sbjct: 95 SSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGF 274
Query: 281 ITYT 292
+T+T
Sbjct: 275 VTFT 286
>gb|BP866817.1|BP866817 BP866817 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-79-A01 5',
mRNA sequence
Length = 379
Score = 110 bits (235), Expect = 4e-023
Identities = 46/96 (47%), Positives = 66/96 (68%)
Frame = +2 / +3
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 90 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 269
Query: 245 DRESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGR 352
DRE+GRSRGFGF+ + I+ MDGK L+GR
Sbjct: 270 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR 377
>gb|AW004286.1|AW004286 701546194 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis
thaliana cDNA clone 701546194, mRNA sequence
Length = 492
Score = 110 bits (234), Expect = 5e-023
Identities = 48/86 (55%), Positives = 58/86 (67%)
Frame = +2 / -3
Query: 140 SSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXI 319
SSKLFVGGLS+GTDD SL+ F YG+V EA +I DRE+ RSRGFGF++ + I
Sbjct: 409 SSKLFVGGLSWGTDDSSLKQAFTSYGEVTEATVIADRETERSRGFGFVSSSCEDSANNAI 230
Query: 320 TAMDGKTLDGRNIRVNHANERTGGFR 397
MDGK L+GR IRVN ER+ R
Sbjct: 229 KEMDGKELNGRQIRVNLPTERSSAPR 152
>gb|BP844382.1|BP844382 BP844382 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-90-D13 5',
mRNA sequence
Length = 413
Score = 73.5 bits (154), Expect(3) = 9e-023
Identities = 26/41 (63%), Positives = 36/41 (87%)
Frame = +2 / +1
Query: 170 YGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYT 292
Y TD+ LR+ F+KYG+V++AKII+DRE+GRSRGF F+T+T
Sbjct: 196 YSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFT 318
Score = 39.6 bits (80), Expect(3) = 9e-023
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2 / +2
Query: 110 SVYQAIRCMSSSKLFVGGLS 169
S+ Q+IRCMSSSK+FVGG+S
Sbjct: 137 SMLQSIRCMSSSKIFVGGIS 196
Score = 32.2 bits (64), Expect(3) = 9e-023
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2 / +2
Query: 326 MDGKTLDGRNIRVNHANER 382
+DG+ L GR IRVN+A+ER
Sbjct: 350 LDGQDLHGRRIRVNYASER 406
>gb|BP844426.1|BP844426 BP844426 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-90-F17 5',
mRNA sequence
Length = 395
Score = 91.8 bits (194), Expect(2) = 3e-022
Identities = 38/73 (52%), Positives = 55/73 (75%)
Frame = +2 / +3
Query: 65 GGLLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIIL 244
G L +N +S+ + ++ + S+KLF+GGLS+GTDD SLRD FA +G V++AK+I+
Sbjct: 90 GLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIV 269
Query: 245 DRESGRSRGFGFI 283
DRE+GRSRGFGF+
Sbjct: 270 DRETGRSRGFGFV 308
Score = 34.5 bits (69), Expect(2) = 3e-022
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2 / +1
Query: 269 GFGFITYTXXXXXXXXITAMDGKTLDGRNIRVN 367
G T+ I+ MDGK L+GR+IRVN
Sbjct: 295 GLDLSTFNDEGAATAAISEMDGKELNGRHIRVN 393
>gb|BP560510.2|BP560510 BP560510 RAFL3 Arabidopsis thaliana cDNA clone RAFL03-07-C24 5',
mRNA sequence
Length = 555
Score = 107 bits (228), Expect = 3e-022
Identities = 45/86 (52%), Positives = 58/86 (67%)
Frame = +2 / +1
Query: 134 MSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXX 313
M S + FVGGL++ TDD +L FA+YG VI++KII DRE+GRSRGFGF+T+
Sbjct: 70 MLSIRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 249
Query: 314 XITAMDGKTLDGRNIRVNHANERTGG 391
I M+G+ LDGR+I VN A R G
Sbjct: 250 AIEGMNGQDLDGRSITVNEAQSRGSG 327
>gb|BP830955.1|BP830955 BP830955 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-87-F24 5',
mRNA sequence
Length = 391
Score = 106 bits (226), Expect = 6e-022
Identities = 44/82 (53%), Positives = 56/82 (68%)
Frame = +2 / +2
Query: 146 KLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXITA 325
+ FVGGL++ TDD +L FA+YG VI++KII DRESGRSRGFGF+T+ I
Sbjct: 83 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRESGRSRGFGFVTFKDEKAMKDAIEG 262
Query: 326 MDGKTLDGRNIRVNHANERTGG 391
M+G+ LDGR+I VN A R G
Sbjct: 263 MNGQDLDGRSITVNEAQSRGSG 328
>gb|T04444.1|T04444 491 Lambda-PRL2 Arabidopsis thaliana cDNA clone 40H5T7, mRNA
sequence
Length = 399
Score = 105 bits (225), Expect = 9e-022
Identities = 47/107 (43%), Positives = 62/107 (57%)
Frame = +2 / +3
Query: 71 LLKNATSSKSSNMSVYQAIRCMSSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDR 250
LL+N S + Y + + F+GGL++ T D LRD F KYG ++EAK++LD+
Sbjct: 3 LLRN*GSVSNYEQISYSLMSEDPEYRCFIGGLAWTTSDRGLRDXFXKYGHLVEAKVVLDK 182
Query: 251 ESGRSRGFGFITYTXXXXXXXXITAMDGKTLDGRNIRVNHANERTGG 391
SGRSRGFGFIT+ I AM+G LDGR I V+ A GG
Sbjct: 183 FSGRSRGFGFITFDEKKAMDEAIAAMNGXDLDGRTITVDKAQPHQGG 323
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 707,703,958
Number of Sequences: 1013581
Number of extensions: 8732587
Number of successful extensions: 117203
Number of sequences better than 1.0e-020: 186
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 30409700205
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)