BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF18e02.yg.3.1
(315 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ841715.1|BQ841715 WHE2984_C08_E16ZS Wheat dormant embr... 113 7e-024
gb|CD921611.1|CD921611 G750.001E09F010309 G750 Triticum aes... 113 7e-024
gb|CV770698.1|CV770698 FGAS065091 Triticum aestivum FGAS: L... 113 7e-024
gb|CA709889.1|CA709889 wdk2c.pk011.a23 wdk2c Triticum aesti... 107 4e-022
gb|DR736917.1|DR736917 FGAS082287 Triticum aestivum FGAS: L... 105 2e-021
gb|BJ259831.1|BJ259831 BJ259831 Y. Ogihara unpublished cDNA... 100 1e-019
gb|AL830419.1|AL830419 AL830419 q:343 Triticum aestivum cDN... 70 1e-010
gb|BJ271807.1|BJ271807 BJ271807 Y. Ogihara unpublished cDNA... 58 4e-007
gb|CD903103.1|CD903103 G356.109C12F010919 G356 Triticum aes... 48 4e-004
gb|AJ615744.1|AJ615744 AJ615744 Triticum turgidum subsp. du... 48 4e-004
gb|CA689284.1|CA689284 wlm96.pk045.h11 wlm96 Triticum aesti... 40 0.087
gb|BJ246273.1|BJ246273 BJ246273 Y. Ogihara unpublished cDNA... 38 0.34
gb|BJ252206.1|BJ252206 BJ252206 Y. Ogihara unpublished cDNA... 38 0.34
gb|BQ166686.1|BQ166686 WHE0915_H11_P21ZT Wheat 5-15 DAP spi... 38 0.34
gb|BQ483366.1|BQ483366 WHE3507_G03_N05ZS Wheat unstressed r... 38 0.34
gb|CZ888301.1|CZ888301 gs67b07.x1.b.screen Bread wheat meth... 36 1.4
gb|CK167320.1|CK167320 FGAS051650 Triticum aestivum FGAS: T... 36 1.4
gb|CV761895.1|CV761895 FGAS056283 Triticum aestivum FGAS: L... 36 1.4
gb|CW510986.1|CW510986 HpaII_H17_073.g1_Ta002 Triticum aest... 34 5.4
gb|CW511265.1|CW511265 HpaII_H17_073.b1_Ta002 Triticum aest... 34 5.4
gb|BJ312499.1|BJ312499 BJ312499 Y. Ogihara unpublished cDNA... 34 5.4
gb|BQ161439.1|BQ161439 WHE1124_B06_D12ZT Wheat etiolated se... 34 5.4
gb|AL828146.1|AL828146 AL828146 p:436 Triticum aestivum cDN... 34 5.4
gb|BJ268220.1|BJ268220 BJ268220 Y. Ogihara unpublished cDNA... 34 5.4
gb|CA599462.1|CA599462 waw1c.pk002.m24 waw1c Triticum aesti... 34 5.4
gb|CA600728.1|CA600728 waw1c.pk005.f4 waw1c Triticum aestiv... 34 5.4
gb|CA609169.1|CA609169 wr1.pk0101.a10 wr1 Triticum aestivum... 34 5.4
gb|CA719732.1|CA719732 wkm2n.pk004.e6 wkm2n Triticum aestiv... 34 5.4
gb|CD873113.1|CD873113 AZO2.122G09F010208 AZO2 Triticum aes... 34 5.4
gb|CD911521.1|CD911521 G550.111G08F010521 G550 Triticum aes... 34 5.4
gb|CD911522.1|CD911522 G550.111G08R010901 G550 Triticum aes... 34 5.4
gb|CD915423.1|CD915423 G550.126C09F010716 G550 Triticum aes... 34 5.4
gb|CD915424.1|CD915424 G550.126C09R010920 G550 Triticum aes... 34 5.4
gb|CK204022.1|CK204022 FGAS012557 Triticum aestivum FGAS: L... 34 5.4
gb|CK204366.1|CK204366 FGAS012902 Triticum aestivum FGAS: L... 34 5.4
gb|CV770441.1|CV770441 FGAS064834 Triticum aestivum FGAS: L... 34 5.4
gb|BT008924.1| Triticum aestivum clone waw1c.pk002.m24:fis,... 34 5.4
>gb|BQ841715.1|BQ841715 WHE2984_C08_E16ZS Wheat dormant embryo cDNA library Triticum
aestivum cDNA clone WHE2984_C08_E16, mRNA sequence
Length = 738
Score = 113 bits (57), Expect = 7e-024
Identities = 206/256 (80%)
Strand = Plus / Plus
Query: 60 catatttcatatttttccattgattcatatgcaaagctcgtggttatggttctcaagtac 119
||||| |||||||| |||||||||||||| | ||||| ||| | |||| | ||| |
Sbjct: 203 catatatcatatttccccattgattcatattcgaagcttgtgtctgtggtgataaagaat 262
Query: 120 tcttcagtggagataacaccaaataaaggcagtatactttccaagattatttctgttact 179
| ||||||||| ||| ||||||||||||||| | ||| ||||||| | || || ||
Sbjct: 263 tgttcagtggaaataggaccaaataaaggcagccttcttcccaagatattgtcagtgaca 322
Query: 180 gtgaggaccattcagaaagatgctgaggaaaagaaagcttcatttaatccccgaccatac 239
| ||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 323 attagggtcattcagaaagatgctgaagagaagaaagcttcatttaacccccgaccatac 382
Query: 240 ttccgattgtntataaattggctctatgaccttactactactgatggccatcatgatggt 299
|| || ||| ||| |||||||| ||||||||| |||| |||| ||||||||||||
Sbjct: 383 tttcggctgtttatcaattggctgaatgaccttagtacttctgaactccatcatgatgga 442
Query: 300 tctaattttcaggttt 315
||||||| |||||||
Sbjct: 443 gctaatttccaggttt 458
>gb|CD921611.1|CD921611 G750.001E09F010309 G750 Triticum aestivum cDNA clone G750001E09,
mRNA sequence
Length = 700
Score = 113 bits (57), Expect = 7e-024
Identities = 206/256 (80%)
Strand = Plus / Plus
Query: 60 catatttcatatttttccattgattcatatgcaaagctcgtggttatggttctcaagtac 119
||||| |||||||| |||||||||||||| | ||||| ||| | |||| | ||| |
Sbjct: 275 catatatcatatttccccattgattcatattcgaagcttgtgtctgtggtgataaagaat 334
Query: 120 tcttcagtggagataacaccaaataaaggcagtatactttccaagattatttctgttact 179
| ||||||||| ||| ||||||||||||||| | ||| ||||||| | || || ||
Sbjct: 335 tgttcagtggaaataggaccaaataaaggcagccttcttcccaagatattgtcagtgaca 394
Query: 180 gtgaggaccattcagaaagatgctgaggaaaagaaagcttcatttaatccccgaccatac 239
| ||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 395 attagggtcattcagaaagatgctgaagagaagaaagcttcatttaacccccgaccatac 454
Query: 240 ttccgattgtntataaattggctctatgaccttactactactgatggccatcatgatggt 299
|| || ||| ||| |||||||| ||||||||| |||| |||| ||||||||||||
Sbjct: 455 tttcggctgtttatcaattggctgaatgaccttagtacttctgaactccatcatgatgga 514
Query: 300 tctaattttcaggttt 315
||||||| |||||||
Sbjct: 515 gctaatttccaggttt 530
>gb|CV770698.1|CV770698 FGAS065091 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 852
Score = 113 bits (57), Expect = 7e-024
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 188 cattcagaaagatgctgaggaaaagaaagcttcatttaatccccgaccatacttccgatt 247
|||||||||||||||||| || ||||||||||||||||| |||||||||||||| || |
Sbjct: 205 cattcagaaagatgctgaagagaagaaagcttcatttaacccccgaccatactttcggct 264
Query: 248 gtntataaattggctctatgaccttactactactgatggccatcatgatggttctaattt 307
|| ||| |||||||| ||||||||| |||| |||| |||||||||||| |||||||
Sbjct: 265 gtttatcaattggctgaatgaccttagtacttctgaactccatcatgatggagctaattt 324
Query: 308 tcaggttt 315
|||||||
Sbjct: 325 ccaggttt 332
>gb|CA709889.1|CA709889 wdk2c.pk011.a23 wdk2c Triticum aestivum cDNA clone wdk2c.pk011.a23
5' end, mRNA sequence
Length = 551
Score = 107 bits (54), Expect = 4e-022
Identities = 199/248 (80%)
Strand = Plus / Plus
Query: 60 catatttcatatttttccattgattcatatgcaaagctcgtggttatggttctcaagtac 119
||||| |||||||| |||||||||||||| | ||||| ||| | |||| | ||| |
Sbjct: 38 catatatcatatttccccattgattcatattcgaagcttgtgtctgtggtgataaagaat 97
Query: 120 tcttcagtggagataacaccaaataaaggcagtatactttccaagattatttctgttact 179
| ||||||||| ||| ||||||||||||||| | ||| ||||||| | || || ||
Sbjct: 98 tgttcagtggaaataggaccaaataaaggcagccttcttcccaagatattgtcagtgaca 157
Query: 180 gtgaggaccattcagaaagatgctgaggaaaagaaagcttcatttaatccccgaccatac 239
| ||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 158 attagggtcattcagaaagatgctgaagagaagaaagcttcatttaacccccgaccatac 217
Query: 240 ttccgattgtntataaattggctctatgaccttactactactgatggccatcatgatggt 299
|| || ||| ||| |||||||| ||||||||| |||| |||| ||||||||||||
Sbjct: 218 tttcggntgtttatcaattggctgaatgaccttagtacttctgaactccatcatgatgga 277
Query: 300 tctaattt 307
|||||||
Sbjct: 278 gctaattt 285
>gb|DR736917.1|DR736917 FGAS082287 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1091
Score = 105 bits (53), Expect = 2e-021
Identities = 205/256 (80%)
Strand = Plus / Plus
Query: 60 catatttcatatttttccattgattcatatgcaaagctcgtggttatggttctcaagtac 119
||||| |||||||| |||||||||||||| | ||||| ||| | |||| | ||| |
Sbjct: 384 catatatcatatttccccattgattcatattcgaagcttgtgtctgtggtgataaagaat 443
Query: 120 tcttcagtggagataacaccaaataaaggcagtatactttccaagattatttctgttact 179
| ||||||||| ||| ||||||||||||||| | ||| ||||||| | || || ||
Sbjct: 444 tgttcagtggaaataggaccaaataaaggcagccttcttcccaagatattgtcagtgaca 503
Query: 180 gtgaggaccattcagaaagatgctgaggaaaagaaagcttcatttaatccccgaccatac 239
| ||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 504 attagggtcattcagaaagatgctgaagagaagaaagcttcatttaacccccgaccatac 563
Query: 240 ttccgattgtntataaattggctctatgaccttactactactgatggccatcatgatggt 299
|| || ||| ||| |||||||| ||||||||| |||| |||| ||||||||||||
Sbjct: 564 tttcggctgtttatcaattggctgaatgaccttagtacttctgaactccatcatgatgga 623
Query: 300 tctaattttcaggttt 315
||||| | |||||||
Sbjct: 624 gctaatatccaggttt 639
Score = 42.1 bits (21), Expect = 0.022
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 tagtctccgagcaaattgttgctcctggtggat 33
||||||| ||||||||| ||||||||||||||
Sbjct: 334 tagtctctgagcaaattaatgctcctggtggat 366
>gb|BJ259831.1|BJ259831 BJ259831 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh22h02 5', mRNA sequence
Length = 628
Score = 99.6 bits (50), Expect = 1e-019
Identities = 206/257 (80%), Gaps = 1/257 (0%)
Strand = Plus / Plus
Query: 60 catatttcatatttttccattgattcatatgcaaagctcgtggttatggttctcaagtac 119
||||| |||||||| |||||||||||||| | ||||| ||| | |||| | ||| |
Sbjct: 307 catatatcatatttccccattgattcatattcgaagcttgtgtctgtggtgataaagaat 366
Query: 120 tcttcagtggagataacaccaaataaaggcagtatactttccaagattatttctgttact 179
| ||||||||| ||| ||||||||||||||| | ||| ||||||| | || || ||
Sbjct: 367 tgttcagtggaaataggaccaaataaaggcagccttcttcccaagatattgtcagtgaca 426
Query: 180 gtgaggaccattcagaaagatgctgaggaaaagaaagcttcatttaatccccgaccatac 239
| ||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 427 attagggtcattcagaaagatgctgaagagaagaaagcttcatttaacccccgaccatac 486
Query: 240 ttccgattgtntataaattggctctatga-ccttactactactgatggccatcatgatgg 298
|| || ||| ||| |||||||| |||| ||||| |||| |||| ||||||||||||
Sbjct: 487 tttcggctgtttatcaattggctgaatgacccttagtacttctgaactccatcatgatgg 546
Query: 299 ttctaattttcaggttt 315
||||||| |||||||
Sbjct: 547 agctaatttccaggttt 563
>gb|AL830419.1|AL830419 AL830419 q:343 Triticum aestivum cDNA clone D06_q343_plate_5, mRNA
sequence
Length = 505
Score = 69.9 bits (35), Expect = 1e-010
Identities = 51/55 (92%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 188 cattcagaaagatgctgaggaaaagaaagcttcatttaatccccg-accatactt 241
|||||||||||||||||| || ||||||||||||||||| ||||| |||||||||
Sbjct: 81 cattcagaaagatgctgaagagaagaaagcttcatttaacccccgnaccatactt 135
>gb|BJ271807.1|BJ271807 BJ271807 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh27j09 5', mRNA sequence
Length = 683
Score = 58.0 bits (29), Expect = 4e-007
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 183 aggaccattcagaaagatgctgaggaaaagaaagcttcatttaatccccgaccatacttc 242
|||| |||||||||||||||||| |||||||||| ||| || ||||| || ||||| ||
Sbjct: 570 aggatcattcagaaagatgctgaagaaaagaaagtttctttcaatcctcggccatatttt 629
Query: 243 cgattgtntataaatt 258
|||| | ||||||||
Sbjct: 630 agattatttataaatt 645
Score = 44.1 bits (22), Expect = 0.006
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 3 gtctccgagcaaattgttgctcctggtggatcatctcagcaatcaccacagcaaccccat 62
||||| |||||| || ||||||||||||| |||||||| | | ||||||| |||
Sbjct: 393 gtctctgagcaagttattgctcctggtgggatgtctcagcagccggcccagcaactccag 452
Query: 63 atttcatatttttccattgattcata 88
||||||||||| || |||||||||||
Sbjct: 453 atttcatatttctcaattgattcata 478
>gb|CD903103.1|CD903103 G356.109C12F010919 G356 Triticum aestivum cDNA clone G356109C12,
mRNA sequence
Length = 719
Score = 48.1 bits (24), Expect = 4e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1 tagtctccgagcaaattgttgctcctggtggatcatctcagcaatcaccaca 52
||||||| ||||||||| |||||||||||||| |||||||| ||| ||||
Sbjct: 534 tagtctctgagcaaattaatgctcctggtggattgtctcagcagtcatcaca 585
Score = 36.2 bits (18), Expect = 1.4
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 60 catatttcatatttttccattgattcatat 89
||||| |||||||| ||||||||||||||
Sbjct: 584 catatatcatatttccccattgattcatat 613
>gb|AJ615744.1|AJ615744 AJ615744 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 12107R, mRNA
sequence
Length = 258
Score = 48.1 bits (24), Expect = 4e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1 tagtctccgagcaaattgttgctcctggtggatcatctcagcaatcaccaca 52
||||||| ||||||||| |||||||||||||| |||||||| ||| ||||
Sbjct: 39 tagtctctgagcaaattaatgctcctggtggattgtctcagcagtcatcaca 90
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 187 ccattcagaaagatgctgaggaaaagaaagc 217
||||||||||||||||||| || ||||||||
Sbjct: 217 ccattcagaaagatgctgaagagaagaaagc 247
Score = 40.1 bits (20), Expect = 0.087
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 60 catatttcatatttttccattgattcatatgcaaagctcgtggttatggttctcaagtac 119
||||| |||||||| |||||||||||||| | ||||| ||| | |||| | ||| |
Sbjct: 89 catatatcatatttccccattgattcatattcgaagcttgtgtctgtggtgataaagaat 148
Query: 120 tcttcagtggagataacaccaaataaaggcag 151
| ||||||||| ||| |||||||||||||||
Sbjct: 149 tgttcagtggaaataggaccaaataaaggcag 180
>gb|CA689284.1|CA689284 wlm96.pk045.h11 wlm96 Triticum aestivum cDNA clone wlm96.pk045.h11
5' end, mRNA sequence
Length = 477
Score = 40.1 bits (20), Expect = 0.087
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 tcagaaagatgctgaggaaa 210
||||||||||||||||||||
Sbjct: 335 tcagaaagatgctgaggaaa 354
>gb|BJ246273.1|BJ246273 BJ246273 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf22d17 5', mRNA sequence
Length = 714
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 82 attcatatgcaaagctcgt 100
|||||||||||||||||||
Sbjct: 712 attcatatgcaaagctcgt 694
>gb|BJ252206.1|BJ252206 BJ252206 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf22d17 3', mRNA sequence
Length = 658
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 82 attcatatgcaaagctcgt 100
|||||||||||||||||||
Sbjct: 470 attcatatgcaaagctcgt 488
>gb|BQ166686.1|BQ166686 WHE0915_H11_P21ZT Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0915_H11_P21, mRNA sequence
Length = 683
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 82 attcatatgcaaagctcgt 100
|||||||||||||||||||
Sbjct: 532 attcatatgcaaagctcgt 550
>gb|BQ483366.1|BQ483366 WHE3507_G03_N05ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3507_G03_N05, mRNA sequence
Length = 612
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 82 attcatatgcaaagctcgt 100
|||||||||||||||||||
Sbjct: 223 attcatatgcaaagctcgt 205
>gb|CZ888301.1|CZ888301 gs67b07.x1.b.screen Bread wheat methylation filtered library
(Bread_Wheat_F) Triticum aestivum genomic, DNA sequence
Length = 564
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 144 aaaggcagtatactttcc 161
||||||||||||||||||
Sbjct: 474 aaaggcagtatactttcc 491
>gb|CK167320.1|CK167320 FGAS051650 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
mRNA sequence
Length = 1173
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 191 tcagaaagatgctgagga 208
||||||||||||||||||
Sbjct: 905 tcagaaagatgctgagga 888
>gb|CV761895.1|CV761895 FGAS056283 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 874
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 202 ctgaggaaaagaaagctt 219
||||||||||||||||||
Sbjct: 857 ctgaggaaaagaaagctt 874
>gb|CW510986.1|CW510986 HpaII_H17_073.g1_Ta002 Triticum aestivum HpaII complete digestion
Triticum aestivum genomic, DNA sequence
Length = 858
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 38 tcagcaatcaccacagc 54
|||||||||||||||||
Sbjct: 520 tcagcaatcaccacagc 504
>gb|CW511265.1|CW511265 HpaII_H17_073.b1_Ta002 Triticum aestivum HpaII complete digestion
Triticum aestivum genomic, DNA sequence
Length = 844
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 38 tcagcaatcaccacagc 54
|||||||||||||||||
Sbjct: 325 tcagcaatcaccacagc 341
>gb|BJ312499.1|BJ312499 BJ312499 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf10g18 5', mRNA sequence
Length = 679
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 194 gaaagatgctgaggaaa 210
|||||||||||||||||
Sbjct: 396 gaaagatgctgaggaaa 412
>gb|BQ161439.1|BQ161439 WHE1124_B06_D12ZT Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1124_B06_D12,
mRNA sequence
Length = 517
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 157 tttccaagattatttct 173
|||||||||||||||||
Sbjct: 243 tttccaagattatttct 259
>gb|AL828146.1|AL828146 AL828146 p:436 Triticum aestivum cDNA clone C07_p436_plate_11, mRNA
sequence
Length = 588
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 115 agtactcttcagtggag 131
|||||||||||||||||
Sbjct: 451 agtactcttcagtggag 467
>gb|BJ268220.1|BJ268220 BJ268220 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh15m23 5', mRNA sequence
Length = 606
Score = 34.2 bits (17), Expect = 5.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 36 tctcagcaatcaccacagcaa 56
||||||||| |||||||||||
Sbjct: 565 tctcagcaaccaccacagcaa 545
>gb|CA599462.1|CA599462 waw1c.pk002.m24 waw1c Triticum aestivum cDNA clone waw1c.pk002.m24
5' end, mRNA sequence
Length = 555
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 279 actgatggccatcatga 295
|||||||||||||||||
Sbjct: 171 actgatggccatcatga 155
>gb|CA600728.1|CA600728 waw1c.pk005.f4 waw1c Triticum aestivum cDNA clone waw1c.pk005.f4 5'
end, mRNA sequence
Length = 636
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 117 tactcttcagtggagat 133
|||||||||||||||||
Sbjct: 220 tactcttcagtggagat 236
>gb|CA609169.1|CA609169 wr1.pk0101.a10 wr1 Triticum aestivum cDNA clone wr1.pk0101.a10 5'
end, mRNA sequence
Length = 564
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 115 agtactcttcagtggag 131
|||||||||||||||||
Sbjct: 56 agtactcttcagtggag 72
>gb|CA719732.1|CA719732 wkm2n.pk004.e6 wkm2n Triticum aestivum cDNA clone wkm2n.pk004.e6 5'
end, mRNA sequence
Length = 462
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 194 gaaagatgctgaggaaa 210
|||||||||||||||||
Sbjct: 97 gaaagatgctgaggaaa 113
>gb|CD873113.1|CD873113 AZO2.122G09F010208 AZO2 Triticum aestivum cDNA clone AZO2122G09,
mRNA sequence
Length = 694
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 115 agtactcttcagtggag 131
|||||||||||||||||
Sbjct: 446 agtactcttcagtggag 462
>gb|CD911521.1|CD911521 G550.111G08F010521 G550 Triticum aestivum cDNA clone G550111G08,
mRNA sequence
Length = 664
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 117 tactcttcagtggagat 133
|||||||||||||||||
Sbjct: 515 tactcttcagtggagat 531
>gb|CD911522.1|CD911522 G550.111G08R010901 G550 Triticum aestivum cDNA clone G550111G08,
mRNA sequence
Length = 692
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 117 tactcttcagtggagat 133
|||||||||||||||||
Sbjct: 345 tactcttcagtggagat 329
>gb|CD915423.1|CD915423 G550.126C09F010716 G550 Triticum aestivum cDNA clone G550126C09,
mRNA sequence
Length = 624
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 191 tcagaaagatgctgagg 207
|||||||||||||||||
Sbjct: 438 tcagaaagatgctgagg 454
>gb|CD915424.1|CD915424 G550.126C09R010920 G550 Triticum aestivum cDNA clone G550126C09,
mRNA sequence
Length = 625
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 191 tcagaaagatgctgagg 207
|||||||||||||||||
Sbjct: 553 tcagaaagatgctgagg 537
>gb|CK204022.1|CK204022 FGAS012557 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 874
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 115 agtactcttcagtggag 131
|||||||||||||||||
Sbjct: 557 agtactcttcagtggag 573
>gb|CK204366.1|CK204366 FGAS012902 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 826
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 115 agtactcttcagtggag 131
|||||||||||||||||
Sbjct: 557 agtactcttcagtggag 573
>gb|CV770441.1|CV770441 FGAS064834 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 851
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 194 gaaagatgctgaggaaa 210
|||||||||||||||||
Sbjct: 620 gaaagatgctgaggaaa 636
>gb|BT008924.1| Triticum aestivum clone waw1c.pk002.m24:fis, full insert mRNA
sequence
Length = 1211
Score = 34.2 bits (17), Expect = 5.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 279 actgatggccatcatga 295
|||||||||||||||||
Sbjct: 171 actgatggccatcatga 155
Database: Triticum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:43 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 61,816
Number of Sequences: 636343
Number of extensions: 61816
Number of successful extensions: 16710
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16632
Number of HSP's gapped (non-prelim): 77
length of query: 315
length of database: 367,240,239
effective HSP length: 19
effective length of query: 296
effective length of database: 355,149,722
effective search space: 105124317712
effective search space used: 105124317712
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)