BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670867.2.1
(790 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL828725.1|AL828725 AL828725 p:739 Triticum aestivum cDN... 60 2e-007
gb|DR738373.1|DR738373 FGAS083590 Triticum aestivum FGAS: L... 42 0.057
gb|CA502415.1|CA502415 WHE4047_C02_F03ZT Wheat meiotic anth... 40 0.23
>gb|AL828725.1|AL828725 AL828725 p:739 Triticum aestivum cDNA clone E06_p739_plate_8, mRNA
sequence
Length = 516
Score = 60.0 bits (30), Expect = 2e-007
Identities = 84/102 (82%)
Strand = Plus / Minus
Query: 520 gagctcgaagagcgagtggatcctccaggcgctggggtccggcaggaggaaggagacgag 579
||||||||||||||||| |||| |||||||| | |||||||||| | ||||||| |||
Sbjct: 511 gagctcgaagagcgagttgatcttccaggcgtcgaggtccggcagcacgaaggagttgag 452
Query: 580 cagcgcggactggagcgtggacaggacgcacatccacgccga 621
|| ||| ||| ||||||||||| ||||||||| |||||
Sbjct: 451 caacgcaatctgcgccgtggacaggaagcacatccaggccga 410
>gb|DR738373.1|DR738373 FGAS083590 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1023
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 368 tcgcggaggacggcggcggcg 388
|||||||||||||||||||||
Sbjct: 311 tcgcggaggacggcggcggcg 291
>gb|CA502415.1|CA502415 WHE4047_C02_F03ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4047_C02_F03, mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 369 cgcggaggacggcggcggcg 388
||||||||||||||||||||
Sbjct: 238 cgcggaggacggcggcggcg 257
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 258,231
Number of Sequences: 636343
Number of extensions: 258231
Number of successful extensions: 69855
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69850
Number of HSP's gapped (non-prelim): 5
length of query: 790
length of database: 367,240,239
effective HSP length: 19
effective length of query: 771
effective length of database: 355,149,722
effective search space: 273820435662
effective search space used: 273820435662
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)