BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.3
(672 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE498386.1|BE498386 WHE0952_C04_E08ZS Wheat pre-anthesis... 285 2e-075
emb|AJ577380.1|TAE577380 Triticum aestivum partial mRNA for... 262 3e-068
gb|BJ252455.1|BJ252455 BJ252455 Y. Ogihara unpublished cDNA... 216 1e-054
gb|BJ263952.1|BJ263952 BJ263952 Y. Ogihara unpublished cDNA... 200 9e-050
gb|BQ903982.1|BQ903982 Ta03_21e08_R Ta03_AAFC_ECORC_Fusariu... 159 3e-037
gb|BI751763.1|BI751763 Ta01_12e06_R Ta01_AAFC_ECORC_Fusariu... 149 3e-034
gb|CA593599.1|CA593599 wpa1c.pk002.n10 wpa1c Triticum aesti... 131 7e-029
gb|BJ254491.1|BJ254491 BJ254491 Y. Ogihara unpublished cDNA... 107 1e-021
gb|BJ257358.1|BJ257358 BJ257358 Y. Ogihara unpublished cDNA... 96 4e-018
gb|BJ262940.1|BJ262940 BJ262940 Y. Ogihara unpublished cDNA... 96 4e-018
gb|CA597345.1|CA597345 wpa1c.pk016.e13 wpa1c Triticum aesti... 58 8e-007
gb|CL901813.1|CL901813 CSHC1188 1639HC library Triticum aes... 42 0.048
gb|BE591773.1|BE591773 WHE1663-1666_K12_K12ZS Wheat heat st... 42 0.048
>gb|BE498386.1|BE498386 WHE0952_C04_E08ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0952_C04_E08, mRNA sequence
Length = 526
Score = 285 bits (144), Expect = 2e-075
Identities = 333/396 (84%)
Strand = Plus / Plus
Query: 44 gtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgagaagagc 103
||||||||||||||| |||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct: 68 gtcatcaccgccgagcaccgcacctacattgagattgtcttcgagaaccccgagaagagc 127
Query: 104 atagactccctccacgtcgatggctacgccttcttcggcgtcgggatgggccccgggaag 163
|| ||| || ||||| |||| |||||||||||||||| || ||| ||||| || |||
Sbjct: 128 atcgacaccttccacctcgacggctacgccttcttcgccgccggcatgggaccggggcta 187
Query: 164 tggtcgccggaggtgaggaagacgtacaacctgctggacacggtgagccggcacacgatc 223
||| || |||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 188 tggacggtggagagcaggaagacatacaacctcctggacacggtgagccggcacacgatc 247
Query: 224 caggtgtacccgcggtcatggacggcaatcatgctgacgttcgacaacgcgggcatgtgg 283
|||||||||||| |||| |||||||| | |||||||||||||||||||| || ||||||
Sbjct: 248 caggtgtacccgaggtcgtggacggcggtgatgctgacgttcgacaacgccgggatgtgg 307
Query: 284 agcgtgcattccaacatctgggagcggtactacctcggggagcagttctacatcagcgtc 343
| | || ||||| | |||||| |||||||||| ||||||||| | ||| | ||| |
Sbjct: 308 aacttgaggtccaatctgtgggagaggtactacctgggggagcagctgtacgtgagctgc 367
Query: 344 gtctcgccggcgcgatcactgcgcgacgagtacaacatgcccgacaacgccctccgctgc 403
||||||||| | || || | |||||||||||||||||||||||| |||||||||||
Sbjct: 368 acctcgccggccaggtcgctcagggacgagtacaacatgcccgacaactccctccgctgc 427
Query: 404 ggcaaggtcgtggggctgccgctgccgccgtcctac 439
||||||||||| || |||||||||||||| |||||
Sbjct: 428 ggcaaggtcgtcggcatgccgctgccgccgccctac 463
>emb|AJ577380.1|TAE577380 Triticum aestivum partial mRNA for putative L-ascorbate oxidase
homolog
Length = 506
Score = 262 bits (132), Expect = 3e-068
Identities = 330/396 (83%)
Strand = Plus / Plus
Query: 44 gtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgagaagagc 103
||||||||||| ||| |||||||| ||| ||||| ||||| ||||||||||||||||||
Sbjct: 64 gtcatcaccgcggagcaccgcacctacattgagattgtctttgagaaccccgagaagagc 123
Query: 104 atagactccctccacgtcgatggctacgccttcttcggcgtcgggatgggccccgggaag 163
|| ||| || ||||| || | |||||||||||||||| || ||| ||||| || |||
Sbjct: 124 atcgacaccttccacctcaacggctacgccttcttcgccgccggcatgggaccggggcta 183
Query: 164 tggtcgccggaggtgaggaagacgtacaacctgctggacacggtgagccggcacacgatc 223
||| || |||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 184 tggacggtggagagcaggaagacatacaacctcctggacacggtgagccggcacacgatc 243
Query: 224 caggtgtacccgcggtcatggacggcaatcatgctgacgttcgacaacgcgggcatgtgg 283
|||||||||||| |||| |||||||| | |||||||||||||||||||| || ||||||
Sbjct: 244 caggtgtacccgaggtcgtggacggcggtgatgctgacgttcgacaacgccgggatgtgg 303
Query: 284 agcgtgcattccaacatctgggagcggtactacctcggggagcagttctacatcagcgtc 343
| | || ||||| | |||||| |||||||||| || |||||| | ||| | ||| |
Sbjct: 304 aacttgaggtccaatctgtgggagaggtactacctgggcgagcagctatacgtgagctgc 363
Query: 344 gtctcgccggcgcgatcactgcgcgacgagtacaacatgcccgacaacgccctccgctgc 403
||||||||| | || || | ||||||||||||||||||||||||||||||||||||
Sbjct: 364 acctcgccggccaggtcgctcagggacgagtacaacatgcccgacaacgccctccgctgc 423
Query: 404 ggcaaggtcgtggggctgccgctgccgccgtcctac 439
||||||||||| || |||||||||||||| |||||
Sbjct: 424 ggcaaggtcgtcggcatgccgctgccgccgccctac 459
>gb|BJ252455.1|BJ252455 BJ252455 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf24h01 3', mRNA sequence
Length = 732
Score = 216 bits (109), Expect = 1e-054
Identities = 283/341 (82%)
Strand = Plus / Minus
Query: 99 agagcatagactccctccacgtcgatggctacgccttcttcggcgtcgggatgggccccg 158
||||||| ||| || ||||| |||| |||||||||||||||| || ||| ||||| || |
Sbjct: 732 agagcatcgacaccttccacctcgacggctacgccttcttcgccgccggcatgggaccgg 673
Query: 159 ggaagtggtcgccggaggtgaggaagacgtacaacctgctggacacggtgagccggcaca 218
|| ||| || |||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 672 ggctatggacggtggagagcaggaagacatacaacctcctggacacggtgagccggcaca 613
Query: 219 cgatccaggtgtacccgcggtcatggacggcaatcatgctgacgttcgacaacgcgggca 278
||||||||||||||||| |||| |||||||| | |||||||||||||||||||| || |
Sbjct: 612 cgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgacaacgccggga 553
Query: 279 tgtggagcgtgcattccaacatctgggagcggtactacctcggggagcagttctacatca 338
|||||| | || ||||| | |||||| |||||||||| ||||||||| | ||| | |
Sbjct: 552 tgtggaacttgaggtccaatctgtgggagaggtactacctgggggagcagctgtacgtga 493
Query: 339 gcgtcgtctcgccggcgcgatcactgcgcgacgagtacaacatgcccgacaacgccctcc 398
|| | ||||||||| | || || | |||||||||||||||||||||||| ||||||
Sbjct: 492 gctgcacctcgccggccaggtcgctcagggacgagtacaacatgcccgacaactccctcc 433
Query: 399 gctgcggcaaggtcgtggggctgccgctgccgccgtcctac 439
|||||||||||||||| || |||||||||||||| |||||
Sbjct: 432 gctgcggcaaggtcgtcggcatgccgctgccgccgccctac 392
>gb|BJ263952.1|BJ263952 BJ263952 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh7d03 3', mRNA sequence
Length = 694
Score = 200 bits (101), Expect = 9e-050
Identities = 221/261 (84%)
Strand = Plus / Minus
Query: 179 aggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgcgg 238
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 650 aggaagacatacaacctcctggacacggtgagccggcacacgatccaggtgtacccgagg 591
Query: 239 tcatggacggcaatcatgctgacgttcgacaacgcgggcatgtggagcgtgcattccaac 298
|| |||||||| | |||||||||||||||||||| || ||||||| | || |||||
Sbjct: 590 tcgtggacggcggtgatgctgacgttcgacaacgccgggatgtggaacttgaggtccaat 531
Query: 299 atctgggagcggtactacctcggggagcagttctacatcagcgtcgtctcgccggcgcga 358
| |||||| |||||||||| ||||||||| | ||| | ||| | ||||||||| |
Sbjct: 530 ctgtgggagaggtactacctgggggagcagctgtacgtgagctgcacctcgccggccagg 471
Query: 359 tcactgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtgggg 418
|| || | ||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 470 tcgctcagggacgagtacaacatgcccgacaattccctccgctgcggcaaggtcgtcggc 411
Query: 419 ctgccgctgccgccgtcctac 439
|||||||||||||| |||||
Sbjct: 410 atgccgctgccgccgccctac 390
>gb|BQ903982.1|BQ903982 Ta03_21e08_R
Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta03_21e08, mRNA
sequence
Length = 203
Score = 159 bits (80), Expect = 3e-037
Identities = 159/184 (86%), Gaps = 1/184 (0%)
Strand = Plus / Minus
Query: 5 ccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagttccgc 64
||||| ||||||||||| ||| | || ||| | ||||| |||||||||||||||||||||
Sbjct: 183 ccccctgccgtgaacggccccatgcacgtcgtgcccaacgtcatcaccgccgagttccgc 124
Query: 65 accttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgtcgat 124
|||||||||||| |||||||||||||||||||||||||||| || ||| | ||| |||
Sbjct: 123 accttcatcgaggtcgtcttcgagaaccccgagaagagcatggagtccatgcacatcg-g 65
Query: 125 ggctacgccttcttcggcgtcgggatgggccccgggaagtggtcgccggaggtgaggaag 184
| ||||||||||||| |||||||||||| || ||||||||| || ||| || |||||||
Sbjct: 64 gmgtacgccttcttcgccgtcgggatggggccggggaagtggacggcggcggagaggaag 5
Query: 185 acgt 188
||||
Sbjct: 4 acgt 1
>gb|BI751763.1|BI751763 Ta01_12e06_R
Ta01_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta01_12e06, mRNA
sequence
Length = 246
Score = 149 bits (75), Expect = 3e-034
Identities = 158/187 (84%)
Strand = Plus / Plus
Query: 44 gtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgagaagagc 103
||||||||| ||||| |||||||| ||| ||||| ||||||||||| |||||||||||
Sbjct: 60 gtcatcaccaccgagcaccgcacctacattgagattktcttcgagaacsccgagaagagc 119
Query: 104 atagactccctccacgtcgatggctacgccttcttcggcgtcgggatgggccccgggaag 163
|| ||| || ||||| |||| |||||||||||||||| || ||| ||||| || |||
Sbjct: 120 atcgacaccktccacctcgacggctacgccttcttcgccgccggcatgggaccggggcta 179
Query: 164 tggtcgccggaggtgaggaagacgtacaacctgctggacacggtgagccggcacacgatc 223
|||||| |||| |||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 180 tggtcggtggagagcaggaagacatacaacctcctggacacggtgagccggcacaccatc 239
Query: 224 caggtgt 230
|||||||
Sbjct: 240 caggtgt 246
>gb|CA593599.1|CA593599 wpa1c.pk002.n10 wpa1c Triticum aestivum cDNA clone wpa1c.pk002.n10
5' end, mRNA sequence
Length = 545
Score = 131 bits (66), Expect = 7e-029
Identities = 159/190 (83%)
Strand = Plus / Plus
Query: 44 gtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgagaagagc 103
||||||||||| ||| |||||||| ||| ||||| ||||| ||||||||||||||||||
Sbjct: 94 gtcatcaccgcggagcaccgcacctacattgagattgtctttgagaaccccgagaagagc 153
Query: 104 atagactccctccacgtcgatggctacgccttcttcggcgtcgggatgggccccgggaag 163
|| ||| || ||||| || | |||||||||||||||| || ||| ||||| || |||
Sbjct: 154 atcgacaccttccacctcaacggctacgccttcttcgccgccggcatgggaccggggcta 213
Query: 164 tggtcgccggaggtgaggaagacgtacaacctgctggacacggtgagccggcacacgatc 223
||| || |||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 214 tggacggtggagagcaggaagacatacaacctcctggacacggtgagccggcacacgatt 273
Query: 224 caggtgtacc 233
|| |||||||
Sbjct: 274 caagtgtacc 283
>gb|BJ254491.1|BJ254491 BJ254491 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf5n08 3', mRNA sequence
Length = 592
Score = 107 bits (54), Expect = 1e-021
Identities = 153/186 (82%)
Strand = Plus / Minus
Query: 254 atgctgacgttcgacaacgcgggcatgtggagcgtgcattccaacatctgggagcggtac 313
|||||||||||||||||||| || ||||||| | || ||||| | |||||| |||||
Sbjct: 586 atgctgacgttcgacaacgccgggatgtggaacttgaggtccaatctgtgggagaggtac 527
Query: 314 tacctcggggagcagttctacatcagcgtcgtctcgccggcgcgatcactgcgcgacgag 373
||||| ||||||||| | ||| | ||| | ||||||||| | || || | ||||||
Sbjct: 526 tacctgggggagcagctgtacgtgagctgcacctcgccggccaggtcgctcagggacgag 467
Query: 374 tacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccg 433
||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||
Sbjct: 466 tacaacatgcccgacaattccctccgctgcggcaaggtcgtcggcatgccgctgccgccg 407
Query: 434 tcctac 439
|||||
Sbjct: 406 ccctac 401
>gb|BJ257358.1|BJ257358 BJ257358 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh10b24 5', mRNA sequence
Length = 684
Score = 95.6 bits (48), Expect = 4e-018
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 368 gacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccgctg 427
||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct: 303 gacgagtacaacatgcccgacaattccctccgctgcggcaaggtcgtcggcatgccgctg 362
Query: 428 ccgccgtcctac 439
|||||| |||||
Sbjct: 363 ccgccgccctac 374
>gb|BJ262940.1|BJ262940 BJ262940 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh10b24 3', mRNA sequence
Length = 657
Score = 95.6 bits (48), Expect = 4e-018
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 368 gacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccgctg 427
||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct: 488 gacgagtacaacatgcccgacaattccctccgctgcggcaaggtcgtcggcatgccgctg 429
Query: 428 ccgccgtcctac 439
|||||| |||||
Sbjct: 428 ccgccgccctac 417
>gb|CA597345.1|CA597345 wpa1c.pk016.e13 wpa1c Triticum aestivum cDNA clone wpa1c.pk016.e13
5' end, mRNA sequence
Length = 533
Score = 58.0 bits (29), Expect = 8e-007
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 368 gacgagtacaacatgcccgacaacgccctccgctgcggcaagg 410
|||||||||||||||||||||||| | |||| ||||||||||
Sbjct: 478 gacgagtacaacatgcccgacaactcnntccgttgcggcaagg 436
>gb|CL901813.1|CL901813 CSHC1188 1639HC library Triticum aestivum genomic clone
1639HC06N08, DNA sequence
Length = 923
Score = 42.1 bits (21), Expect = 0.048
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 485 tctgaccatccaatccaaactcaaa 509
||||||||||||| |||||||||||
Sbjct: 120 tctgaccatccaaaccaaactcaaa 96
>gb|BE591773.1|BE591773 WHE1663-1666_K12_K12ZS Wheat heat stressed flag leaf cDNA library
Triticum aestivum cDNA clone WHE1663-1666_K12_K12, mRNA
sequence
Length = 214
Score = 42.1 bits (21), Expect = 0.048
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 181 gaagacgtacaacctgctgga 201
|||||||||||||||||||||
Sbjct: 167 gaagacgtacaacctgctgga 187
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 160,007
Number of Sequences: 636343
Number of extensions: 160007
Number of successful extensions: 48086
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48059
Number of HSP's gapped (non-prelim): 26
length of query: 672
length of database: 367,240,239
effective HSP length: 19
effective length of query: 653
effective length of database: 355,149,722
effective search space: 231912768466
effective search space used: 231912768466
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)