BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404858.2.1
(958 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD871730.1|CD871730 AZO2.118O23F010213 AZO2 Triticum aes... 297 7e-079
gb|CD894235.1|CD894235 G118.125L23F010829 G118 Triticum aes... 58 1e-006
gb|CK206078.1|CK206078 FGAS017654 Triticum aestivum FGAS: L... 58 1e-006
gb|BE414217.1|BE414217 SCU007.E04.R990714 ITEC SCU Wheat En... 56 5e-006
gb|BJ248602.1|BJ248602 BJ248602 Y. Ogihara unpublished cDNA... 54 2e-005
gb|BJ254819.1|BJ254819 BJ254819 Y. Ogihara unpublished cDNA... 54 2e-005
gb|CV759795.1|CV759795 FGAS054179 Triticum aestivum FGAS: L... 54 2e-005
gb|CV777345.1|CV777345 FGAS071750 Triticum aestivum FGAS: L... 54 2e-005
gb|BQ743557.1|BQ743557 WHE4105_D07_G13ZS Wheat salt-stresse... 46 0.004
gb|CV765356.1|CV765356 FGAS059741 Triticum aestivum FGAS: L... 46 0.004
gb|BQ606611.1|BQ606611 BRY_2476 wheat EST endosperm library... 44 0.018
gb|BF202566.1|BF202566 WHE1785_E04_J07ZS Wheat pre-anthesis... 42 0.069
emb|AX660750.1| Sequence 1107 from Patent WO03000906 42 0.069
gb|BE637888.1|BE637888 WHE1755-1758_E11_E11ZS Wheat pre-ant... 40 0.27
gb|CA651727.1|CA651727 wre1n.pk179.e5 wre1n Triticum aestiv... 40 0.27
gb|CD896720.1|CD896720 G174.103L23F010822 G174 Triticum aes... 40 0.27
gb|CN008363.1|CN008363 WHE2640_D04_H08ZE Wheat Fusarium gra... 40 0.27
gb|CN009837.1|CN009837 WHE3863_D01_G01ZS Wheat Fusarium gra... 40 0.27
gb|CN012934.1|CN012934 WHE3954_F12_L24ZS Wheat Fusarium gra... 40 0.27
gb|CV768878.1|CV768878 FGAS063269 Triticum aestivum FGAS: L... 40 0.27
>gb|CD871730.1|CD871730 AZO2.118O23F010213 AZO2 Triticum aestivum cDNA clone AZO2118O23,
mRNA sequence
Length = 721
Score = 297 bits (150), Expect = 7e-079
Identities = 508/626 (81%), Gaps = 6/626 (0%)
Strand = Plus / Minus
Query: 5 tctgcgccgatctcggcgcgggtgccgccagctacgtccactgcgacgtcaccagcgagg 64
||||||| || |||||| ||| ||| |||||||||| | || |||||||||| ||||
Sbjct: 631 tctgcgcggagctcggcccggcggcctccagctacgtgcggtgtgacgtcaccaaagagg 572
Query: 65 acgacgtcgcggccgcggtggaccacgccgtggcgacgttcggcgcgctggacatcatgt 124
| ||||||||||| || || |||||| |||| || | |||||| ||||||||||||||
Sbjct: 571 aggacgtcgcggcggccgtcgaccacaccgtcgccaggttcgggaagctggacatcatgt 512
Query: 125 tcaacaacgcgggcgtcagcgggccggcgtgctacagcgtccgggagagcggcaaggctg 184
|||||||||| ||| || |||| |||||||| ||||| ||||||| ||| ||||| |
Sbjct: 511 tcaacaacgccggcatcggcggcgcggcgtgccacagcatccgggacagcaccaaggagg 452
Query: 185 acttcgagcgcgtgctggccgtgaatctggtgggcccgttcctcggcaccaagcacgcgg 244
|||||||||||||||||||||| || || ||||| || ||||| || |||||||||||||
Sbjct: 451 acttcgagcgcgtgctggccgtcaacctcgtggggcccttcctgggtaccaagcacgcgg 392
Query: 245 cgcgggtgatggtgccctcgcgccgcggtggctgcatcatagggacgtcgagcgtggcgg 304
||||||| ||||||||| |||| | ||||||||||| |||||||||||| |||||
Sbjct: 391 cgcgggtcatggtgcccgcgcggc---aaggctgcatcatcgggacgtcgagcctggcgt 335
Query: 305 cggcagtgactggcgtgtcgtcgtacgcgtacgcgtgcgcgaagcgcgcgatggtgactc 364
|||| ||| |||||| ||||| |||||||| ||||||| |||||||| |||| |
Sbjct: 334 cggcggtgggcggcgtggcgtcgcacgcgtacacgtgcgccaagcgcgccctggtcgggc 275
Query: 365 tgacggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccc 424
|||||||||||||||| ||||||| |||||||| || || ||||| |||||| ||||||
Sbjct: 274 tgacggagaacgcggcgacggagcttggccagcatgggatccgcgtcaactgcatctccc 215
Query: 425 ccgcgggggtcgccacgccgctgaccatgaggtacatgggcctcgaggcggaggcgttgg 484
| |||| || |||||||||||| ||| | | ||| | || || || | |||||||| |
Sbjct: 214 cggcggcggctgccacgccgctggccacgggctacgttgggctggacggcgaggcgttcg 155
Query: 485 agcaggcaatggagggcatggccaacctcaagggcgtgggcgcactgcgggtgcacgacg 544
|| ||| |||||| | | || ||||||||||||||||| ||||||||| | |||
Sbjct: 154 agatggccatggagtcctttgctaacctcaagggcgtggg---actgcgggtcaaggaca 98
Query: 545 tcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggccacaacc 604
|||||||||| |||| ||| || ||| ||||||||||| | ||| | |||||||||||||
Sbjct: 97 tcgccgccgcggtgctctttctcgcctgcgatgacgcgcgctacgtgagcggccacaacc 38
Query: 605 tgttcgtcgacggcgggatctccgtc 630
|| || |||||||||| |||||||||
Sbjct: 37 tgctcatcgacggcggcatctccgtc 12
>gb|CD894235.1|CD894235 G118.125L23F010829 G118 Triticum aestivum cDNA clone G118125L23,
mRNA sequence
Length = 750
Score = 58.0 bits (29), Expect = 1e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 228 cggcaccaagcacgcggcgcgggtgatggtgcc 260
||||| |||||||||||||||||||||||||||
Sbjct: 459 cggcatcaagcacgcggcgcgggtgatggtgcc 491
>gb|CK206078.1|CK206078 FGAS017654 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1147
Score = 58.0 bits (29), Expect = 1e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 228 cggcaccaagcacgcggcgcgggtgatggtgcc 260
||||| |||||||||||||||||||||||||||
Sbjct: 189 cggcatcaagcacgcggcgcgggtgatggtgcc 221
>gb|BE414217.1|BE414217 SCU007.E04.R990714 ITEC SCU Wheat Endosperm Library Triticum
aestivum cDNA clone SCU007.E04, mRNA sequence
Length = 682
Score = 56.0 bits (28), Expect = 5e-006
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 371 agaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| ||||||| ||||||| || |||||||||||||| ||||||
Sbjct: 566 agaacgcggctgcg-agctcggggagcacggtatccgcgtgaactgcgtgtccccc 620
>gb|BJ248602.1|BJ248602 BJ248602 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf7c11 5', mRNA sequence
Length = 609
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 562 ttcctggccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacggcgg 620
|||||||||||||| || ||||||||||| ||| |||||||| |||||||||||||
Sbjct: 320 ttcctggccagcgaggagtcgaggtacatctccgggcacaacctcgtcgtcgacggcgg 378
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 89 gagctcggggagcacggcatccgcgtgaactgcgtgtccccc 130
>gb|BJ254819.1|BJ254819 BJ254819 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf7c11 3', mRNA sequence
Length = 576
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 562 ttcctggccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacggcgg 620
|||||||||||||| || ||||||||||| ||| |||||||| |||||||||||||
Sbjct: 326 ttcctggccagcgaggagtcgaggtacatctccgggcacaacctcgtcgtcgacggcgg 268
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 557 gagctcggggagcacggcatccgcgtgaactgcgtgtccccc 516
>gb|CV759795.1|CV759795 FGAS054179 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 849
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 592 agcggccacaacctgttcgtcgacggcgggatctccgtc 630
||||||||||||||| || |||||||||| |||||||||
Sbjct: 106 agcggccacaacctgctcatcgacggcggcatctccgtc 144
>gb|CV777345.1|CV777345 FGAS071750 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 849
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 592 agcggccacaacctgttcgtcgacggcgggatctccgtc 630
||||||||||||||| || |||||||||| |||||||||
Sbjct: 120 agcggccacaacctgctcatcgacggcggcatctccgtc 158
>gb|BQ743557.1|BQ743557 WHE4105_D07_G13ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4105_D07_G13, mRNA sequence
Length = 511
Score = 46.1 bits (23), Expect = 0.004
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 562 ttcctggccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacggcgg 620
|||||||||||||| || ||||||||||| ||| |||||||| |||| ||||||||
Sbjct: 203 ttcctggccagcgacgagtcgaggtacatctccgggcacaacctcgtcgtggacggcgg 261
>gb|CV765356.1|CV765356 FGAS059741 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 809
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 234 caagcacgcggcgcgggtgatggtgcc 260
||||||||||||||| |||||||||||
Sbjct: 621 caagcacgcggcgcgcgtgatggtgcc 647
>gb|BQ606611.1|BQ606611 BRY_2476 wheat EST endosperm library Triticum aestivum cDNA 5',
mRNA sequence
Length = 562
Score = 44.1 bits (22), Expect = 0.018
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||| ||||||| || |||||||||||||| ||||||
Sbjct: 458 gagctcggggagcacggtatccgcgtgaactgcgtgtccccc 499
>gb|BF202566.1|BF202566 WHE1785_E04_J07ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1785_E04_J07, mRNA sequence
Length = 372
Score = 42.1 bits (21), Expect = 0.069
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 39 cgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggac 87
||||||||||||||||||| |||||| |||||| ||||| ||||||
Sbjct: 123 cgtccactgcgacgtcaccgtcgaggagagcgtcgccgccgccgtggac 171
>emb|AX660750.1| Sequence 1107 from Patent WO03000906
Length = 568
Score = 42.1 bits (21), Expect = 0.069
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 585 gtacatcagcggccacaacctgttcgtcgacggcggg 621
|||| ||| |||||||||||| ||||||||||||||
Sbjct: 260 gtacgtcaacggccacaacctcgtcgtcgacggcggg 296
>gb|BE637888.1|BE637888 WHE1755-1758_E11_E11ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE1755-1758_E11_E11, mRNA
sequence
Length = 408
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 gctggacatcatgttcaacaacgc 134
||||||||||||| ||||||||||
Sbjct: 122 gctggacatcatgctcaacaacgc 145
>gb|CA651727.1|CA651727 wre1n.pk179.e5 wre1n Triticum aestivum cDNA clone wre1n.pk179.e5 5'
end, mRNA sequence
Length = 445
Score = 40.1 bits (20), Expect = 0.27
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 564 cctggccagcgatgacgcgaggtacatcagcg 595
|||||| ||||| || ||||||||||||||||
Sbjct: 140 cctggcaagcgacgaagcgaggtacatcagcg 171
>gb|CD896720.1|CD896720 G174.103L23F010822 G174 Triticum aestivum cDNA clone G174103L23,
mRNA sequence
Length = 453
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 536 tgcacgacgtcgccgccgcc 555
||||||||||||||||||||
Sbjct: 309 tgcacgacgtcgccgccgcc 290
>gb|CN008363.1|CN008363 WHE2640_D04_H08ZE Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2640_D04_H08,
mRNA sequence
Length = 441
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 gctggacatcatgttcaacaacgc 134
||||||||||||| ||||||||||
Sbjct: 373 gctggacatcatgctcaacaacgc 396
>gb|CN009837.1|CN009837 WHE3863_D01_G01ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3863_D01_G01,
mRNA sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 gctggacatcatgttcaacaacgc 134
||||||||||||| ||||||||||
Sbjct: 380 gctggacatcatgctcaacaacgc 403
>gb|CN012934.1|CN012934 WHE3954_F12_L24ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3954_F12_L24,
mRNA sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.27
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 119 tcatgttcaacaacgcgggcgtcagcgg 146
|||||||||||||||| ||| |||||||
Sbjct: 303 tcatgttcaacaacgccggcatcagcgg 330
>gb|CV768878.1|CV768878 FGAS063269 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 835
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 111 gctggacatcatgttcaacaacgc 134
||||||||||||| ||||||||||
Sbjct: 471 gctggacatcatgctcaacaacgc 494
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 315,842
Number of Sequences: 636343
Number of extensions: 315842
Number of successful extensions: 85044
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84995
Number of HSP's gapped (non-prelim): 46
length of query: 958
length of database: 367,240,239
effective HSP length: 20
effective length of query: 938
effective length of database: 354,513,379
effective search space: 332533549502
effective search space used: 332533549502
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)