BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCT19a08.yg.2.1
(645 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW321511.1|CW321511 104_814_11475594_148_35939_065 Sorgh... 605 e-171
gb|BE359241.1|BE359241 DG1_39_H04.g1_A002 Dark Grown 1 (DG1... 458 e-127
gb|BG103129.1|BG103129 RHIZ2_18_E05.g1_A003 Rhizome2 (RHIZ2... 236 2e-060
gb|BG103283.1|BG103283 RHIZ2_18_E05.b1_A003 Rhizome2 (RHIZ2... 157 2e-036
gb|CW491052.1|CW491052 fsbb001f280m01k0 Sorghum methylation... 141 9e-032
gb|CW481051.1|CW481051 fsbb001f240g19f0 Sorghum methylation... 117 1e-024
gb|CD225710.1|CD225710 CCC1_41_E05.b1_A007 Callus culture/c... 117 1e-024
gb|CD228716.1|CD228716 CCC1_9_C05.b1_A007 Callus culture/ce... 117 1e-024
gb|CW450736.1|CW450736 fsbb001f189i08k0 Sorghum methylation... 109 3e-022
gb|CW109166.1|CW109166 104_481_11097938_116_34506_011 Sorgh... 58 1e-006
gb|CL162166.1|CL162166 104_354_10806217_114_31830_121 Sorgh... 52 6e-005
gb|CW329487.1|CW329487 104_826_11479871_116_35995_096 Sorgh... 48 0.001
gb|CW329488.1|CW329488 104_826_11479871_148_35996_096 Sorgh... 48 0.001
gb|AW282498.1|AW282498 LG1_312_H11.g1_A002 Light Grown 1 (L... 48 0.001
gb|CD424461.1|CD424461 SA1_6_C12.b1_A002 Salicylic acid-tre... 48 0.001
gb|CD424558.1|CD424558 SA1_6_C12.g1_A002 Salicylic acid-tre... 48 0.001
gb|CD462684.1|CD462684 ETH1_39_D04.b1_A002 Ethylene-treated... 48 0.001
gb|CD464043.1|CD464043 ETH1_48_G09.b1_A002 Ethylene-treated... 48 0.001
gb|CF429936.1|CF429936 PH1_25_A06.b1_A002 Phosphorous-defic... 48 0.001
gb|CN126440.1|CN126440 RHOH1_17_D12.b1_A002 Acid- and alkal... 48 0.001
gb|CN127635.1|CN127635 RHOH1_24_D09.b1_A002 Acid- and alkal... 48 0.001
gb|CW152409.1|CW152409 104_553_11144476_116_36325_006 Sorgh... 42 0.062
gb|BZ337866.1|BZ337866 ia91e05.b1 WGS-SbicolorF (JM107 adap... 40 0.25
gb|BZ350377.1|BZ350377 hs87e08.g1 WGS-SbicolorF (JM107 adap... 40 0.25
gb|CW224692.1|CW224692 104_662_11203960_116_37206_064 Sorgh... 40 0.25
gb|CW224693.1|CW224693 104_662_11203960_148_37205_064 Sorgh... 40 0.25
gb|CW388629.1|CW388629 fsbb001f073h14f0 Sorghum methylation... 40 0.25
gb|CW388630.1|CW388630 fsbb001f073h14k0 Sorghum methylation... 40 0.25
gb|CW427191.1|CW427191 fsbb001f139b02f0 Sorghum methylation... 40 0.25
gb|CW474610.1|CW474610 fsbb001f230i24k0 Sorghum methylation... 40 0.25
gb|CL704720.2|CL704720 SP__Bb0027F06.f SP__Bb Sorghum propi... 40 0.25
gb|CL705540.2|CL705540 SP__Bb0042P05.r SP__Bb Sorghum propi... 40 0.25
gb|CL702365.2|CL702365 SP__Ba0083O17.f SP__Ba Sorghum propi... 40 0.25
gb|BE918210.1|BE918210 OV1_3_C09.b1_A002 Ovary 1 (OV1) Sorg... 40 0.25
gb|CN137605.1|CN137605 OX1_58_H05.b1_A002 Oxidatively-stres... 40 0.25
gb|AC152913.1| Sorghum bicolor clone SB106M24, *** SEQUENCI... 40 0.25
>gb|CW321511.1|CW321511 104_814_11475594_148_35939_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475594, DNA
sequence
Length = 674
Score = 605 bits (305), Expect = e-171
Identities = 361/379 (95%), Gaps = 3/379 (0%)
Strand = Plus / Plus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 270 gatcctcctcatcaacaacggcctcgactcctgcgtcccgcccgaggtcggcctgctccg 329
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggt 120
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 330 ggaggtgaccgtcttcgacgtcagcttcaacgcgctcgtcggcccgctgccgcagcaggt 389
Query: 121 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 390 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtcgggcgccgt 449
Query: 181 cccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcctacaacttctt 240
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 450 cccggaggccatctgcgcgctcccgcgcctcaagaacctcaccatctcctacaacttctt 509
Query: 241 caccggcgagccgccgtcctgcgcgcgcgtcgtgccttcg---gacggtgacaggaggaa 297
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 510 caccggcgagccgccgtcctgcgcgcgcgtcgtgcctacgcccgacggcgacaggaggaa 569
Query: 298 ctgcctgcccaaccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgca 357
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctgcctgcccaaccgccccgcgcagcgcacgccgcagcagtgcgccgcgttctactcgca 629
Query: 358 gccgcccgtcgactgcgcc 376
|||||||||||||||||||
Sbjct: 630 gccgcccgtcgactgcgcc 648
>gb|BE359241.1|BE359241 DG1_39_H04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 458 bits (231), Expect = e-127
Identities = 278/293 (94%), Gaps = 3/293 (1%)
Strand = Plus / Plus
Query: 87 tcaactcgctcgttggcccgctgccgcagcaggtggccgggatgcgcaaggtggagcagc 146
||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tcaacgcgctcgtcggcccgctgccgcagcaggtgcccgggatgcgcaaggtggagcagc 60
Query: 147 tggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgccctcccgc 206
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct: 61 tggacgtcgcgcacaaccgcctgtcgggcgccgtcccggaggccatctgcgcgctcccgc 120
Query: 207 ggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccgtcctgcgcgc 266
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcctcaagaacctcaccatctcctacaacttcttcaccggcgagccgccgtcctgcgcgc 180
Query: 267 gcgtcgtgccttcg---gacggtgacaggaggaactgcctgcccaaccgccccacacagc 323
||||||||||| || ||||| |||||||||||||||||||||||||||||| | ||||
Sbjct: 181 gcgtcgtgcctacgcccgacggcgacaggaggaactgcctgcccaaccgccccgcgcagc 240
Query: 324 gcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcgactgcgcc 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcgactgcgcc 293
Score = 117 bits (59), Expect = 1e-024
Identities = 77/83 (92%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgat---tgata 597
|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct: 529 acaattgtacgtggtcagtcattgttgtgcttagattagcagtgttcttgattgatgata 588
Query: 598 gctaccggcatatagaagattat 620
|||||||||||||||||||||||
Sbjct: 589 gctaccggcatatagaagattat 611
Score = 85.7 bits (43), Expect = 5e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 375 ccatcataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgcca 434
|||||||| ||||||||| |||| || |||||||| ||||| ||||| ||||| ||||||
Sbjct: 336 ccatcatatcccggcccgctgccgccagtataccccatgccatacgcgtcgccgccgcca 395
Query: 435 cctgcgcagtaccgatgat 453
|||||||| ||||||||||
Sbjct: 396 cctgcgcattaccgatgat 414
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 467 agaagcactatcactttcaccttaattc 494
||||||||||||||||||||||||||||
Sbjct: 439 agaagcactatcactttcaccttaattc 466
>gb|BG103129.1|BG103129 RHIZ2_18_E05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 499
Score = 236 bits (119), Expect = 2e-060
Identities = 145/153 (94%), Gaps = 3/153 (1%)
Strand = Plus / Plus
Query: 227 tcctacaacttcttcaccggcgagccgccgtcctgcgcgcgcgtcgtgccttcg---gac 283
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 1 tcctacaacttcttcaccggcgagccgccgtcctgcgcgcgcgtcgtgcctacgccggac 60
Query: 284 ggtgacaggaggaactgcctgcccaaccgccccacacagcgcacgccgcagcagtgcgcc 343
|| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 61 ggcgacaggaggaactgcctgcccaaccgccccgcgcagcgcacgccgcagcagtgcgcc 120
Query: 344 gcgttctactcgcagccgcccgtcgactgcgcc 376
||||||||||| |||||||||||||||||||||
Sbjct: 121 gcgttctactcacagccgcccgtcgactgcgcc 153
Score = 117 bits (59), Expect = 1e-024
Identities = 77/83 (92%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgat---tgata 597
|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct: 398 acaattgtacgtggtcagtcattgttgtgcttagattagcagtgttcttgattgatgata 457
Query: 598 gctaccggcatatagaagattat 620
|||||||||||||||||||||||
Sbjct: 458 gctaccggcatatagaagattat 480
Score = 85.7 bits (43), Expect = 5e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 375 ccatcataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgcca 434
|||||||| ||||||||| |||| || |||||||| ||||| ||||| ||||| ||||||
Sbjct: 205 ccatcatatcccggcccgctgccgccagtataccccatgccatacgcgtcgccgccgcca 264
Query: 435 cctgcgcagtaccgatgat 453
|||||||| ||||||||||
Sbjct: 265 cctgcgcattaccgatgat 283
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 467 agaagcactatcactttcaccttaattcgcc 497
|||||||| ||||||||||||||||||||||
Sbjct: 308 agaagcaccatcactttcaccttaattcgcc 338
>gb|BG103283.1|BG103283 RHIZ2_18_E05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 424
Score = 157 bits (79), Expect = 2e-036
Identities = 94/99 (94%)
Strand = Plus / Plus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 323 gatcctcctcatcaacaacggcctcgactcctgcgtcccgcccgaggtcggcctgctccg 382
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgt 99
||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 ggaggtgaccgtcttcgacgtcagcttcaacgcgctcgt 421
>gb|CW491052.1|CW491052 fsbb001f280m01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f280m01, DNA
sequence
Length = 482
Score = 141 bits (71), Expect = 9e-032
Identities = 249/307 (81%), Gaps = 1/307 (0%)
Strand = Plus / Plus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||||||||||| ||||||| ||||||||||| ||||| |||| |||||| | ||
Sbjct: 176 catcaacaacggcctcacctcctgcttcccgccggagatcggcctgctgcgggagctcac 235
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
||| ||||||||||||||||| ||||| ||||||||||||| | || | || ||
Sbjct: 236 cgtgctcgacgtcagcttcaaccagctcgccggcccgctgccgccggagctcgcgctcat 295
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | ||| ||||||||||||||||||||||||||| || |||| ||| | ||| ||
Sbjct: 296 gaggaagctggagcagctggacgtcgcgcacaacctgctcaccggcgccataccgtcggg 355
Query: 190 catctgcgccctcccgcggctca-agaacctgaccatctcctacaacttcttcaccggcg 248
|| |||| ||| ||||| |||| ||||| | ||| || |||||||||||||| | ||||
Sbjct: 356 gatatgcgacctgccgcgcctcacagaacttcaccttcgcctacaacttcttcccgggcg 415
Query: 249 agccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgccca 308
|||||||| | ||||||||||||||||| |||| | ||| |||| |||||||||||
Sbjct: 416 agccgccggcgtgcgcgcgcgtcgtgccgcgggacagcgaccggagccactgcctgcccg 475
Query: 309 accgccc 315
|||||||
Sbjct: 476 accgccc 482
>gb|CW481051.1|CW481051 fsbb001f240g19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240g19, DNA
sequence
Length = 292
Score = 117 bits (59), Expect = 1e-024
Identities = 209/259 (80%)
Strand = Plus / Plus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||||||||||| ||||||| ||||||||||| |||| |||| |||||| | ||
Sbjct: 34 catcaacaacggcctcacctcctgcttcccgccggagatcgggctgctgcgggagctcac 93
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
||| ||||||||||||||||| ||||| ||||||||||||| | || | || ||
Sbjct: 94 cgtgctcgacgtcagcttcaaccagctcgccggcccgctgccgccggagctcgcgctcat 153
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | ||| ||||||||||||||||||||||||||| | |||| ||| | ||| ||
Sbjct: 154 gaggaagctggagcagctggacgtcgcgcacaacctggtcaccggcgccataccgtcggg 213
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
|| |||| ||| ||||| |||| |||| | ||| || |||||||||||||||| |||||
Sbjct: 214 gatatgcgacctgccgcgcctcaggaacttcaccttcgcctacaacttcttcacgggcga 273
Query: 250 gccgccgtcctgcgcgcgc 268
||||||| | |||||||||
Sbjct: 274 gccgccggcgtgcgcgcgc 292
>gb|CD225710.1|CD225710 CCC1_41_E05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_E05_A007 3', mRNA sequence
Length = 299
Score = 117 bits (59), Expect = 1e-024
Identities = 77/83 (92%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgat---tgata 597
|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct: 181 acaattgtacgtggtcagtcattgttgtgcttagattagcagtgttcttgattgatgata 240
Query: 598 gctaccggcatatagaagattat 620
|||||||||||||||||||||||
Sbjct: 241 gctaccggcatatagaagattat 263
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 467 agaagcactatcactttcaccttaatt 493
|||||||||||||||||||||||||||
Sbjct: 91 agaagcactatcactttcaccttaatt 117
>gb|CD228716.1|CD228716 CCC1_9_C05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_9_C05_A007 3', mRNA sequence
Length = 639
Score = 117 bits (59), Expect = 1e-024
Identities = 77/83 (92%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgat---tgata 597
|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct: 128 acaattgtacgtggtcagtcattgttgtgcttagattagcagtgttcttgattgatgata 187
Query: 598 gctaccggcatatagaagattat 620
|||||||||||||||||||||||
Sbjct: 188 gctaccggcatatagaagattat 210
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 467 agaagcactatcactttcaccttaattc 494
||||||||||||||||||||||||||||
Sbjct: 38 agaagcactatcactttcaccttaattc 65
>gb|CW450736.1|CW450736 fsbb001f189i08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f189i08, DNA
sequence
Length = 142
Score = 109 bits (55), Expect = 3e-022
Identities = 73/79 (92%), Gaps = 3/79 (3%)
Strand = Plus / Minus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgat---tgata 597
|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct: 83 acaattgtacgtggtcagtcattgttgtgcttagattagcagtgttcttgattgatgata 24
Query: 598 gctaccggcatatagaaga 616
|||||||||||||||||||
Sbjct: 23 gctaccggcatatagaaga 5
>gb|CW109166.1|CW109166 104_481_11097938_116_34506_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097938, DNA
sequence
Length = 349
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
||||||| ||||||||| ||||||| ||||||||||| ||||| ||| |||||| | ||
Sbjct: 273 catcaactacggcctcgcctcctgcttcccgccggagatcggcctgccgcgggagctcac 332
Query: 70 cgtcttcgacgtcagct 86
||| || |||||||||
Sbjct: 333 cgtgctctacgtcagct 349
>gb|CL162166.1|CL162166 104_354_10806217_114_31830_121 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806217, DNA
sequence
Length = 562
Score = 52.0 bits (26), Expect = 6e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 226 ctcctacaacttcttcaccggcgagccgcc 255
||||||||||||| ||||||||||||||||
Sbjct: 335 ctcctacaacttcatcaccggcgagccgcc 306
>gb|CW329487.1|CW329487 104_826_11479871_116_35995_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479871, DNA
sequence
Length = 703
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccg 165
|||||||||| |||||||||||||||||
Sbjct: 353 tggagcagctcgacgtcgcgcacaaccg 380
>gb|CW329488.1|CW329488 104_826_11479871_148_35996_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479871, DNA
sequence
Length = 654
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 138 tggagcagctggacgtcgcgcacaaccg 165
|||||||||| |||||||||||||||||
Sbjct: 639 tggagcagctcgacgtcgcgcacaaccg 612
>gb|AW282498.1|AW282498 LG1_312_H11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 480
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccg 165
|||||||||| |||||||||||||||||
Sbjct: 38 tggagcagctcgacgtcgcgcacaaccg 65
>gb|CD424461.1|CD424461 SA1_6_C12.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_6_C12_A002 3', mRNA sequence
Length = 580
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccg 165
|||||||||| |||||||||||||||||
Sbjct: 110 tggagcagcttgacgtcgcgcacaaccg 137
>gb|CD424558.1|CD424558 SA1_6_C12.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_6_C12_A002 5', mRNA sequence
Length = 718
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccg 165
|||||||||| |||||||||||||||||
Sbjct: 335 tggagcagctcgacgtcgcgcacaaccg 362
>gb|CD462684.1|CD462684 ETH1_39_D04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_39_D04_A002 3', mRNA sequence
Length = 448
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccg 165
|||||||||| |||||||||||||||||
Sbjct: 58 tggagcagctcgacgtcgcgcacaaccg 85
>gb|CD464043.1|CD464043 ETH1_48_G09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_48_G09_A002 3', mRNA sequence
Length = 691
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccg 165
|||||||||| |||||||||||||||||
Sbjct: 220 tggagcagctcgacgtcgcgcacaaccg 247
>gb|CF429936.1|CF429936 PH1_25_A06.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_A06_A002 3', mRNA sequence
Length = 525
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccg 165
|||||||||| |||||||||||||||||
Sbjct: 35 tggagcagctcgacgtcgcgcacaaccg 62
>gb|CN126440.1|CN126440 RHOH1_17_D12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_17_D12_A002 3', mRNA sequence
Length = 588
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccg 165
|||||||||| |||||||||||||||||
Sbjct: 129 tggagcagctcgacgtcgcgcacaaccg 156
>gb|CN127635.1|CN127635 RHOH1_24_D09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_D09_A002 3', mRNA sequence
Length = 746
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccg 165
|||||||||| |||||||||||||||||
Sbjct: 208 tggagcagctcgacgtcgcgcacaaccg 235
>gb|CW152409.1|CW152409 104_553_11144476_116_36325_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144476, DNA
sequence
Length = 617
Score = 42.1 bits (21), Expect = 0.062
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 224 atctcctacaacttcttcacc 244
|||||||||||||||||||||
Sbjct: 534 atctcctacaacttcttcacc 514
>gb|BZ337866.1|BZ337866 ia91e05.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia91e05 5', DNA sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 135 aggtggagcagctggacgtc 154
||||||||||||||||||||
Sbjct: 61 aggtggagcagctggacgtc 42
>gb|BZ350377.1|BZ350377 hs87e08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hs87e08 5', DNA sequence
Length = 535
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 572 tagattagtagtgttcttga 591
||||||||||||||||||||
Sbjct: 110 tagattagtagtgttcttga 91
>gb|CW224692.1|CW224692 104_662_11203960_116_37206_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203960, DNA
sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 572 tagattagtagtgttcttga 591
||||||||||||||||||||
Sbjct: 433 tagattagtagtgttcttga 414
>gb|CW224693.1|CW224693 104_662_11203960_148_37205_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203960, DNA
sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 572 tagattagtagtgttcttga 591
||||||||||||||||||||
Sbjct: 414 tagattagtagtgttcttga 433
>gb|CW388629.1|CW388629 fsbb001f073h14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073h14, DNA
sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 aggtggagcagctggacgtc 154
||||||||||||||||||||
Sbjct: 347 aggtggagcagctggacgtc 366
>gb|CW388630.1|CW388630 fsbb001f073h14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073h14, DNA
sequence
Length = 732
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 135 aggtggagcagctggacgtc 154
||||||||||||||||||||
Sbjct: 617 aggtggagcagctggacgtc 598
>gb|CW427191.1|CW427191 fsbb001f139b02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f139b02, DNA
sequence
Length = 513
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 aggtggagcagctggacgtc 154
||||||||||||||||||||
Sbjct: 311 aggtggagcagctggacgtc 330
>gb|CW474610.1|CW474610 fsbb001f230i24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f230i24, DNA
sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 135 aggtggagcagctggacgtc 154
||||||||||||||||||||
Sbjct: 293 aggtggagcagctggacgtc 274
>gb|CL704720.2|CL704720 SP__Bb0027F06.f SP__Bb Sorghum propinquum genomic clone
SP__Bb0027F06 5', DNA sequence
Length = 691
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 163 ccgcctgtccggggccgtcccgga 186
|||||||||| |||||||||||||
Sbjct: 315 ccgcctgtccagggccgtcccgga 338
>gb|CL705540.2|CL705540 SP__Bb0042P05.r SP__Bb Sorghum propinquum genomic clone
SP__Bb0042P05 3', DNA sequence
Length = 647
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 163 ccgcctgtccggggccgtcccgga 186
|||||||||| |||||||||||||
Sbjct: 336 ccgcctgtccagggccgtcccgga 359
>gb|CL702365.2|CL702365 SP__Ba0083O17.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0083O17 5', DNA sequence
Length = 727
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 163 ccgcctgtccggggccgtcccgga 186
|||||||||| |||||||||||||
Sbjct: 333 ccgcctgtccagggccgtcccgga 356
>gb|BE918210.1|BE918210 OV1_3_C09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 507
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 135 aggtggagcagctggacgtc 154
||||||||||||||||||||
Sbjct: 402 aggtggagcagctggacgtc 383
>gb|CN137605.1|CN137605 OX1_58_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_H05_A002 3', mRNA sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.25
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccg 165
|||||||||| ||||| |||||||||||
Sbjct: 195 tggagcagctcgacgttgcgcacaaccg 222
>gb|AC152913.1| Sorghum bicolor clone SB106M24, *** SEQUENCING IN PROGRESS ***, 7
ordered pieces
Length = 102187
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 572 tagattagtagtgttcttga 591
||||||||||||||||||||
Sbjct: 76984 tagattagtagtgttcttga 77003
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,781
Number of Sequences: 832831
Number of extensions: 176781
Number of successful extensions: 52330
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52227
Number of HSP's gapped (non-prelim): 94
length of query: 645
length of database: 491,359,669
effective HSP length: 19
effective length of query: 626
effective length of database: 475,535,880
effective search space: 297685460880
effective search space used: 297685460880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)