BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064D08F020918.3.1
(559 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW261541.1|CW261541 104_728_11229568_116_35175_052 Sorgh... 222 3e-056
gb|CW406102.1|CW406102 fsbb001f098p11k0 Sorghum methylation... 222 3e-056
gb|CW261542.1|CW261542 104_728_11229568_148_35171_052 Sorgh... 131 8e-029
gb|CL148845.1|CL148845 104_329_10593371_148_31784_111 Sorgh... 100 3e-019
gb|CW087009.1|CW087009 104_431_10947347_114_33026_044 Sorgh... 78 1e-012
gb|CW406101.1|CW406101 fsbb001f098p11f0 Sorghum methylation... 62 6e-008
gb|CW087010.1|CW087010 104_431_10947347_116_33022_044 Sorgh... 48 9e-004
gb|CW203217.1|CW203217 104_629_11185514_116_36913_003 Sorgh... 42 0.054
gb|CW122770.1|CW122770 104_501_11110850_148_34674_001 Sorgh... 38 0.84
gb|CW122810.1|CW122810 104_501_11110874_116_34680_001 Sorgh... 38 0.84
gb|CW122811.1|CW122811 104_501_11110874_148_34676_001 Sorgh... 38 0.84
gb|CW348630.1|CW348630 fsbb001f009b09f0 Sorghum methylation... 38 0.84
gb|CW448005.1|CW448005 fsbb001f181g11k0 Sorghum methylation... 38 0.84
gb|CL182552.1|CL182552 104_394_10897535_148_31919_143 Sorgh... 36 3.3
gb|CW153741.1|CW153741 104_555_11145211_148_36344_072 Sorgh... 36 3.3
gb|CW271920.1|CW271920 104_744_11403228_148_36223_044 Sorgh... 36 3.3
gb|CL703306.2|CL703306 SP__Ba0094O15.f SP__Ba Sorghum propi... 36 3.3
gb|CF758010.1|CF758010 DSAF1_26_B07.g1_A011 Drought-stresse... 36 3.3
gb|CF760876.1|CF760876 DSAF1_67_H09.b1_A011 Drought-stresse... 36 3.3
>gb|CW261541.1|CW261541 104_728_11229568_116_35175_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229568, DNA
sequence
Length = 599
Score = 222 bits (112), Expect = 3e-056
Identities = 124/128 (96%)
Strand = Plus / Minus
Query: 397 agatggaagtaccttctagacccagcaataaacaaagagccttggtcgcaacaggaggaa 456
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agatggaaatacattctagacccagcaataaacaaagagccttggtcgcaacaggaggaa 316
Query: 457 ctaagattgatccgtgcgcagcaagtttatggaaacaaatggtgtaaaatggtcaaacat 516
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctaagattgattcgtgcacagcaagtttatggaaacaaatggtgtaaaatggtcaaacat 256
Query: 517 ttcccagg 524
||||||||
Sbjct: 255 ttcccagg 248
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 525 caggacaaatgatgcactcaaagaacattgga 556
||||||||||| ||||||||||||||||||||
Sbjct: 47 caggacaaatggtgcactcaaagaacattgga 16
>gb|CW406102.1|CW406102 fsbb001f098p11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098p11, DNA
sequence
Length = 724
Score = 222 bits (112), Expect = 3e-056
Identities = 124/128 (96%)
Strand = Plus / Minus
Query: 397 agatggaagtaccttctagacccagcaataaacaaagagccttggtcgcaacaggaggaa 456
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 agatggaaatacattctagacccagcaataaacaaagagccttggtcgcaacaggaggaa 111
Query: 457 ctaagattgatccgtgcgcagcaagtttatggaaacaaatggtgtaaaatggtcaaacat 516
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ctaagattgattcgtgcacagcaagtttatggaaacaaatggtgtaaaatggtcaaacat 51
Query: 517 ttcccagg 524
||||||||
Sbjct: 50 ttcccagg 43
Score = 131 bits (66), Expect = 8e-029
Identities = 96/106 (90%)
Strand = Plus / Minus
Query: 293 aggaagatgaggcactaaagcaaatggtaaaaagacatgggacgaaaaactggcgaacta 352
|||||||||||||||| | |||||||||||| | ||||||||||||| |||||| |||||
Sbjct: 684 aggaagatgaggcactcacgcaaatggtaaacaaacatgggacgaaagactggcaaacta 625
Query: 353 ttgcatgtgctatacctggccgaaatgccaactcatgcctttcaag 398
|||||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 624 ttgcatgtgctatacctggccgaaatgcacattcatgcttttcaag 579
>gb|CW261542.1|CW261542 104_728_11229568_148_35171_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229568, DNA
sequence
Length = 580
Score = 131 bits (66), Expect = 8e-029
Identities = 96/106 (90%)
Strand = Plus / Plus
Query: 293 aggaagatgaggcactaaagcaaatggtaaaaagacatgggacgaaaaactggcgaacta 352
|||||||||||||||| | |||||||||||| | ||||||||||||| |||||| |||||
Sbjct: 259 aggaagatgaggcactcacgcaaatggtaaacaaacatgggacgaaagactggcaaacta 318
Query: 353 ttgcatgtgctatacctggccgaaatgccaactcatgcctttcaag 398
|||||||||||||||||||||||||||| | |||||| |||||||
Sbjct: 319 ttgcatgtgctatacctggccgaaatgcacattcatgcttttcaag 364
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 214 ggacctcctcacaagaaaattgtccagaacttcacggagagcagtagttcc 264
|||||||||| ||||||||||||||| | ||||| |||||||||||||||
Sbjct: 88 ggacctcctcgcaagaaaattgtccacagcttcaaagagagcagtagttcc 138
Score = 38.2 bits (19), Expect = 0.84
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 279 cagatggtcatcagaggaa 297
|||||||||||||||||||
Sbjct: 153 cagatggtcatcagaggaa 171
>gb|CL148845.1|CL148845 104_329_10593371_148_31784_111 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593371, DNA
sequence
Length = 601
Score = 99.6 bits (50), Expect = 3e-019
Identities = 80/90 (88%)
Strand = Plus / Minus
Query: 1 gcttcagccgaagcttgtggtggaatcggagcttcttatccgagagcagacatggagcag 60
||||||| ||| ||||||||||| |||||||| ||||||| ||| |||| ||||||||||
Sbjct: 503 gcttcaggcgaggcttgtggtgggatcggagcctcttatctgagcgcagccatggagcag 444
Query: 61 agtagtgatgggttgccaatcagccagcgg 90
||||| |||||| ||||||||| |||||||
Sbjct: 443 agtagcgatggggtgccaatcaaccagcgg 414
Score = 81.8 bits (41), Expect = 6e-014
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 89 ggagggctaacagttcaacaaaacactcaagcaagtcagatgaggttgctgaagaca 145
|||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 57 ggagggctaacagtccaacagaacacccaagcaagtcagatgaggttgctcaagaca 1
>gb|CW087009.1|CW087009 104_431_10947347_114_33026_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947347, DNA
sequence
Length = 792
Score = 77.8 bits (39), Expect = 1e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 415 gacccagcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccgtgcg 474
||||||||||||||||||||| |||||| |||||||||| |||| |||||| || ||
Sbjct: 137 gacccagcaataaacaaagagggttggtcagaacaggaggagctaaaattgattcgagct 196
Query: 475 cagcaagtttatggaaacaaatggtgtaaaatggtcaaacatttccc 521
|| ||| | ||||||| | | ||| |||||||||||||||||||||
Sbjct: 197 catcaaatatatggaagccagtggcttaaaatggtcaaacatttccc 243
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 525 caggacaaatgatgcactcaaagaacattgga 556
|||||||||| |||||||||||||||| ||||
Sbjct: 423 caggacaaatcatgcactcaaagaacactgga 454
>gb|CW406101.1|CW406101 fsbb001f098p11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098p11, DNA
sequence
Length = 743
Score = 61.9 bits (31), Expect = 6e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 214 ggacctcctcacaagaaaattgtccagaacttcacggagagcagtagttcc 264
|||||||||| ||||||||||||||| | ||||| |||||||||||||||
Sbjct: 581 ggacctcctcgcaagaaaattgtccacagcttcaaagagagcagtagttcc 631
Score = 38.2 bits (19), Expect = 0.84
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 279 cagatggtcatcagaggaa 297
|||||||||||||||||||
Sbjct: 646 cagatggtcatcagaggaa 664
>gb|CW087010.1|CW087010 104_431_10947347_116_33022_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947347, DNA
sequence
Length = 686
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 525 caggacaaatgatgcactcaaagaacattgga 556
|||||||||| |||||||||||||||| ||||
Sbjct: 493 caggacaaatcatgcactcaaagaacactgga 462
>gb|CW203217.1|CW203217 104_629_11185514_116_36913_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185514, DNA
sequence
Length = 277
Score = 42.1 bits (21), Expect = 0.054
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 501 taaaatggtcaaacatttccc 521
|||||||||||||||||||||
Sbjct: 172 taaaatggtcaaacatttccc 192
>gb|CW122770.1|CW122770 104_501_11110850_148_34674_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110850, DNA
sequence
Length = 655
Score = 38.2 bits (19), Expect = 0.84
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 agacatggagcagagtagt 66
|||||||||||||||||||
Sbjct: 411 agacatggagcagagtagt 429
>gb|CW122810.1|CW122810 104_501_11110874_116_34680_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110874, DNA
sequence
Length = 744
Score = 38.2 bits (19), Expect = 0.84
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 48 agacatggagcagagtagt 66
|||||||||||||||||||
Sbjct: 716 agacatggagcagagtagt 698
>gb|CW122811.1|CW122811 104_501_11110874_148_34676_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110874, DNA
sequence
Length = 501
Score = 38.2 bits (19), Expect = 0.84
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 agacatggagcagagtagt 66
|||||||||||||||||||
Sbjct: 411 agacatggagcagagtagt 429
>gb|CW348630.1|CW348630 fsbb001f009b09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f009b09, DNA
sequence
Length = 435
Score = 38.2 bits (19), Expect = 0.84
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 11 aagcttgtggtggaatcggagct 33
|||||||||||| ||||||||||
Sbjct: 365 aagcttgtggtgcaatcggagct 343
>gb|CW448005.1|CW448005 fsbb001f181g11k0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f181g11, DNA
sequence
Length = 734
Score = 38.2 bits (19), Expect = 0.84
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 agacatggagcagagtagt 66
|||||||||||||||||||
Sbjct: 58 agacatggagcagagtagt 76
>gb|CL182552.1|CL182552 104_394_10897535_148_31919_143 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897535, DNA
sequence
Length = 751
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 386 catgcctttcaagatgga 403
||||||||||||||||||
Sbjct: 109 catgcctttcaagatgga 92
>gb|CW153741.1|CW153741 104_555_11145211_148_36344_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145211, DNA
sequence
Length = 724
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 505 atggtcaaacatttccca 522
||||||||||||||||||
Sbjct: 324 atggtcaaacatttccca 341
>gb|CW271920.1|CW271920 104_744_11403228_148_36223_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403228, DNA
sequence
Length = 699
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 292 gaggaagatgaggcacta 309
||||||||||||||||||
Sbjct: 654 gaggaagatgaggcacta 671
>gb|CL703306.2|CL703306 SP__Ba0094O15.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0094O15 5', DNA sequence
Length = 278
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 505 atggtcaaacatttccca 522
||||||||||||||||||
Sbjct: 103 atggtcaaacatttccca 86
>gb|CF758010.1|CF758010 DSAF1_26_B07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_26_B07_A011 3', mRNA sequence
Length = 441
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 505 atggtcaaacatttccca 522
||||||||||||||||||
Sbjct: 78 atggtcaaacatttccca 61
>gb|CF760876.1|CF760876 DSAF1_67_H09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_67_H09_A011 5', mRNA sequence
Length = 427
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 505 atggtcaaacatttccca 522
||||||||||||||||||
Sbjct: 311 atggtcaaacatttccca 294
Database: Sorghum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:37 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 130,472
Number of Sequences: 832831
Number of extensions: 130472
Number of successful extensions: 36385
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36353
Number of HSP's gapped (non-prelim): 32
length of query: 559
length of database: 491,359,669
effective HSP length: 19
effective length of query: 540
effective length of database: 475,535,880
effective search space: 256789375200
effective search space used: 256789375200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)