BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBD3a09.xg.3.1
(1105 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE360272.1|BE360272 DG1_62_A02.b1_A002 Dark Grown 1 (DG1... 739 0.0
gb|CD431645.1|CD431645 ETH1_10_A01.b1_A002 Ethylene-treated... 622 e-176
gb|BE360344.1|BE360344 DG1_62_A02.g1_A002 Dark Grown 1 (DG1... 500 e-139
gb|CW290640.1|CW290640 104_770_11413123_116_35565_080 Sorgh... 307 1e-081
gb|CW383536.1|CW383536 fsbb001f066b06f0 Sorghum methylation... 307 1e-081
gb|CW439406.1|CW439406 fsbb001f157i12k0 Sorghum methylation... 307 1e-081
gb|CW098369.1|CW098369 104_464_11002968_116_34361_082 Sorgh... 299 3e-079
gb|CL153568.1|CL153568 104_338_10780804_114_31369_052 Sorgh... 297 1e-078
gb|CL150387.1|CL150387 104_332_10778494_116_31358_046 Sorgh... 246 4e-063
gb|CL150390.1|CL150390 104_332_10778496_116_31358_048 Sorgh... 238 9e-061
gb|CW290641.1|CW290641 104_770_11413123_148_35561_080 Sorgh... 222 5e-056
gb|CL150386.1|CL150386 104_332_10778494_114_31357_046 Sorgh... 155 1e-035
gb|CL153569.1|CL153569 104_338_10780804_116_31370_052 Sorgh... 109 6e-022
gb|CF072861.1|CF072861 FE1_26_G02.b1_A002 Iron-deficient se... 98 2e-018
gb|CF072818.1|CF072818 FE1_26_B01.b1_A002 Iron-deficient se... 90 5e-016
gb|CL171605.1|CL171605 104_373_10889543_148_31776_215 Sorgh... 42 0.11
gb|CW200403.1|CW200403 104_625_11184048_116_36864_082 Sorgh... 42 0.11
gb|CW254656.1|CW254656 104_718_11225796_148_35117_034 Sorgh... 42 0.11
gb|CW489430.1|CW489430 fsbb001f274f21k0 Sorghum methylation... 42 0.11
gb|BE125757.1|BE125757 DG1_55_G10.b1_A002 Dark Grown 1 (DG1... 42 0.11
gb|BE366199.1|BE366199 PI1_31_E01.b2_A002 Pathogen induced ... 42 0.11
gb|BG103952.1|BG103952 RHIZ2_38_F06.b1_A003 Rhizome2 (RHIZ2... 42 0.11
gb|BG322436.1|BG322436 EM1_24_H10.b1_A002 Embryo 1 (EM1) So... 42 0.11
gb|BG322777.1|BG322777 EM1_14_B02.b1_A002 Embryo 1 (EM1) So... 42 0.11
gb|CB927269.1|CB927269 ABA1_14_C05.g1_A012 Abscisic acid-tr... 42 0.11
gb|CB929201.1|CB929201 ABA1_40_C09.g1_A012 Abscisic acid-tr... 42 0.11
gb|CD204901.1|CD204901 HS1_10_F03.g1_A012 Heat-shocked seed... 42 0.11
gb|CD205020.1|CD205020 HS1_11_A04.g1_A012 Heat-shocked seed... 42 0.11
gb|CD206586.1|CD206586 HS1_23_E04.g1_A012 Heat-shocked seed... 42 0.11
gb|CD206854.1|CD206854 HS1_25_C11.g1_A012 Heat-shocked seed... 42 0.11
gb|CD209167.1|CD209167 HS1_46_A03.g1_A012 Heat-shocked seed... 42 0.11
gb|CD210341.1|CD210341 HS1_50_D06.g1_A012 Heat-shocked seed... 42 0.11
gb|CD212612.1|CD212612 HS1_6_D12.g1_A012 Heat-shocked seedl... 42 0.11
gb|CD212679.1|CD212679 HS1_6_A06.g1_A012 Heat-shocked seedl... 42 0.11
gb|CD213816.1|CD213816 HS1_53_C05.g1_A012 Heat-shocked seed... 42 0.11
gb|CD225517.1|CD225517 CCC1_3_G11.g1_A007 Callus culture/ce... 42 0.11
gb|CD230022.1|CD230022 SS1_40_G02.g1_A012 Salt-stressed see... 42 0.11
gb|CD230323.1|CD230323 SS1_42_A03.g1_A012 Salt-stressed see... 42 0.11
gb|CD230330.1|CD230330 SS1_42_B10.g1_A012 Salt-stressed see... 42 0.11
gb|CD431758.1|CD431758 ETH1_10_E05.g1_A002 Ethylene-treated... 42 0.11
gb|CF427614.1|CF427614 PH1_16_C11.g1_A002 Phosphorous-defic... 42 0.11
gb|CF427751.1|CF427751 PH1_10_D09.g1_A002 Phosphorous-defic... 42 0.11
gb|CF431176.1|CF431176 NIT1_6_C10.g1_A002 Nitrogen-deficien... 42 0.11
gb|CF487587.1|CF487587 POL1_44_E08.g1_A002 Pollen Sorghum b... 42 0.11
gb|CN124930.1|CN124930 RHOH1_7_G03.g1_A002 Acid- and alkali... 42 0.11
gb|CN128029.1|CN128029 RHOH1_26_C05.g1_A002 Acid- and alkal... 42 0.11
gb|CN134511.1|CN134511 OX1_26_G03.g1_A002 Oxidatively-stres... 42 0.11
gb|CN134639.1|CN134639 OX1_27_C05.g1_A002 Oxidatively-stres... 42 0.11
gb|CN139741.1|CN139741 OX1_23_G12.g1_A002 Oxidatively-stres... 42 0.11
gb|CX606953.1|CX606953 ANR1_5_H02.g1_A002 Anaerobic roots S... 42 0.11
gb|CX608645.1|CX608645 ANR1_39_G12.g1_A002 Anaerobic roots ... 42 0.11
gb|CX610402.1|CX610402 ANR1_18_B03.g1_A002 Anaerobic roots ... 42 0.11
gb|CX611736.1|CX611736 ANR1_26_A01.g1_A002 Anaerobic roots ... 42 0.11
gb|CX613559.1|CX613559 GABR1_8_H01.g1_A002 GA- or brassinol... 42 0.11
gb|CX614189.1|CX614189 GABR1_12_C09.g1_A002 GA- or brassino... 42 0.11
gb|CX617399.1|CX617399 GABR1_33_B11.g1_A002 GA- or brassino... 42 0.11
gb|CX622203.1|CX622203 GABR1_62_C12.g2_A002 GA- or brassino... 42 0.11
gb|CX622944.1|CX622944 GABR1_66_G12.g1_A002 GA- or brassino... 42 0.11
gb|CL157412.1|CL157412 104_345_10783541_114_31477_101 Sorgh... 40 0.43
gb|CL190460.1|CL190460 104_408_10906093_114_32483_053 Sorgh... 40 0.43
gb|CL190461.1|CL190461 104_408_10906093_116_32501_053 Sorgh... 40 0.43
gb|CW098370.1|CW098370 104_464_11002968_148_34365_082 Sorgh... 40 0.43
gb|CW317097.1|CW317097 104_808_11473234_148_35858_035 Sorgh... 40 0.43
gb|CW453134.1|CW453134 fsbb001f197a05f0 Sorghum methylation... 40 0.43
>gb|BE360272.1|BE360272 DG1_62_A02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 534
Score = 739 bits (373), Expect = 0.0
Identities = 448/473 (94%)
Strand = Plus / Plus
Query: 133 gcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgcctcc 192
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 62 gcggcggtgcggcaagcggaggagctggtggagagggagatgggcgggcgcgacgcctcc 121
Query: 193 cacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccgaagag 252
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 122 cacgacgccgcgcacgcgctccgcgtccgggacctcgcgctctcgctcgcagccgaagag 181
Query: 253 ggcctctccgctcccgaccgcctcctcaccgtggaactggccgctctcctgcacgacgtt 312
||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 182 ggcctctccgcccccagccgcctcctcaccgtggaactggcctctctcctgcacgacgtt 241
Query: 313 ggagattacaagtataccaagaacaatgtggaggatatgagcgtcgttgagatgtttctt 372
||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct: 242 ggagattacaagtataccaagaacaatgtggaggacatgagcgtcgtggagacgtttctt 301
Query: 373 caagaggtaggattggatgaaggccaaaaggatgaaatagtggcaattattaaggggatg 432
|||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct: 302 caagaggtaggattggatgaagcccagaaggatgaaatagtggcgattattaaggggatg 361
Query: 433 gggttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaatttgcaatt 492
|||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 362 gggttcaaaaatgaagtttcgaataaatctattgttgatcccacccttgagtttgcaatt 421
Query: 493 gtacaagatgcagatcgcctggatgcaattggggcaattggtattgcaagatgttttaca 552
|||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct: 422 gtacaagacgcagatcgcctggatgcaattggagcaattggtattgcaaggtgctttaca 481
Query: 553 tatggtggtagcaagaacagcgcattacatgatcctagaattctgccacgtga 605
|||||||| ||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 482 tatggtgggagcaagaacagcgcattgcatgatcctcgaattctgccacgtga 534
>gb|CD431645.1|CD431645 ETH1_10_A01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_10_A01_A002 3', mRNA sequence
Length = 590
Score = 622 bits (314), Expect = e-176
Identities = 429/466 (92%), Gaps = 1/466 (0%)
Strand = Plus / Plus
Query: 516 tgcaattggggcaattggtattgcaagatgttttacatatggtggtagcaagaacagcgc 575
||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 1 tgcaattggagcaattggtattgcaaggtgctttacatatggtgggagcaagaacagcgc 60
Query: 576 attacatgatcctagaattctgccacgtgatagcttgtcgaaggaaaagtacatgtccaa 635
||| ||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 61 attgcatgatcctcgaattctgccacgtgataacttgtcaaaggaaaagtacatgtccaa 120
Query: 636 ggaagagaagcagacatcaatcaatcattttcatgagaagctttttaaactgaaggacat 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggaagagaagcagacatcaatcaatcattttcatgagaagctttttaaactgaaggacat 180
Query: 696 gatgaagacagaggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatt 755
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 181 gatgaagacagaggctgggaaaaggagagctgagaaaaggcataggttcatggaggactt 240
Query: 756 tgtggctgaattctacgaagagtggagtggcagggcttgaggttgaacaaccaggttttg 815
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 241 tgtggctgaattctacgaagagtggagtggcagggcttgaggttgaactaccaggtttta 300
Query: 816 agcctatgtcaaagtgtgcagtcggcgaaccatttctcaacaacccatgatgatgttgtc 875
| | | ||| | |||||||||| ||| ||||||||||||||| | ||||||||||||||
Sbjct: 301 aacttgtgtgagagtgtgcagttggccaaccatttctcaacagctgatgatgatgttgtc 360
Query: 876 tacctggcctactttttgccgatgaagccacgcaaataaacaatgcaaagcctattagat 935
||||||| || ||| || |||||||||| ||||||| |||||||||||||||||||||
Sbjct: 361 gacctggcatattttctgttgatgaagccaggcaaatatacaatgcaaagcctattagat 420
Query: 936 tggctggacaaatcatacggtcctgtgataagcaaacaacccacta 981
|||||| || |||||||||| || ||| |||||| ||||||||||
Sbjct: 421 tggctgaac-aatcatacggccccgtgttaagcagtcaacccacta 465
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1015 caaacagatgccatggcatcttgctgctgtt 1045
||||||||||||||||||||||| |||||||
Sbjct: 560 caaacagatgccatggcatcttgttgctgtt 590
>gb|BE360344.1|BE360344 DG1_62_A02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 379
Score = 500 bits (252), Expect = e-139
Identities = 349/380 (91%), Gaps = 1/380 (0%)
Strand = Plus / Plus
Query: 602 gtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagacatcaatcaatc 661
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgataccttgtcaaaggaaaagtacatgtccaaggaagagaagcagacatcaatcaatc 60
Query: 662 attttcatgagaagctttttaaactgaaggacatgatgaagacagaggccgggaaaagga 721
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 attttcatgagaagctttttaaactgaaggacatgatgaagacagaggctgggaaaagga 120
Query: 722 gagctgagaaaaggcataggttcatggaggaatttgtggctgaattctacgaagagtgga 781
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 121 gagctgagaaaaggcataggttcatggaggactttgtggctgaattctacgaagagtgga 180
Query: 782 gtggcagggcttgaggttgaacaaccaggttttgagcctatgtcaaagtgtgcagtcggc 841
|||||||||||||||||||||| |||||||||| | | | ||| | |||||||||| |||
Sbjct: 181 gtggcagggcttgaggttgaactaccaggttttaaacttgtgtgagagtgtgcagttggc 240
Query: 842 gaaccatttctcaacaacccatgatgatgttgtctacctggcctactttttgccgatgaa 901
||||||||||||||| | |||||||||||||| ||||||| || ||| || ||||||
Sbjct: 241 caaccatttctcaacagctgatgatgatgttgtcgacctggcatattttctgttgatgaa 300
Query: 902 gccacgcaaataaacaatgcaaagcctattagattggctggacaaatcatacggtcctgt 961
|||| ||||||| ||||||||||||||||||||||||||| || |||||||||| || ||
Sbjct: 301 gccaggcaaatatacaatgcaaagcctattagattggctgaac-aatcatacggccccgt 359
Query: 962 gataagcaaacaacccacta 981
| |||||| ||||||||||
Sbjct: 360 gttaagcagtcaacccacta 379
>gb|CW290640.1|CW290640 104_770_11413123_116_35565_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413123, DNA
sequence
Length = 611
Score = 307 bits (155), Expect = 1e-081
Identities = 246/275 (89%), Gaps = 1/275 (0%)
Strand = Plus / Plus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 82 aggctgggaaaaggagagctgagaaaaggcataggttcatggaggactttgtggctgaat 141
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggttttgagcctatgtca 826
||||||||||||||||||||||||||||||||||||| |||||||||| | | | ||| |
Sbjct: 142 tctacgaagagtggagtggcagggcttgaggttgaactaccaggttttaaacttgtgtga 201
Query: 827 aagtgtgcagtcggcgaaccatttctcaacaacccatgatgatgttgtctacctggccta 886
|||||||||| ||| ||||||||||||||| | |||||||||||||| ||||||| ||
Sbjct: 202 gagtgtgcagttggccaaccatttctcaacagctgatgatgatgttgtcgacctggcata 261
Query: 887 ctttttgccgatgaagccacgcaaataaacaatgcaaagcctattagattggctggacaa 946
||| || |||||||||| ||||||| ||||||||||||||||||||||||||| || |
Sbjct: 262 ttttctgttgatgaagccaggcaaatatacaatgcaaagcctattagattggctgaac-a 320
Query: 947 atcatacggtcctgtgataagcaaacaacccacta 981
||||||||| || ||| |||||| ||||||||||
Sbjct: 321 atcatacggccccgtgttaagcagtcaacccacta 355
Score = 97.6 bits (49), Expect = 2e-018
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1015 caaacagatgccatggcatcttgctgctgttgtattgaaataatactgctacaatattac 1074
||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |||
Sbjct: 450 caaacagatgccatggcatcttgttgctgttgtactgcaataatactgctacaata-tac 508
Query: 1075 cggtttcatcacc 1087
||||| |||||||
Sbjct: 509 cggttacatcacc 521
>gb|CW383536.1|CW383536 fsbb001f066b06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f066b06, DNA
sequence
Length = 565
Score = 307 bits (155), Expect = 1e-081
Identities = 246/275 (89%), Gaps = 1/275 (0%)
Strand = Plus / Plus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 54 aggctgggaaaaggagagctgagaaaaggcataggttcatggaggactttgtggctgaat 113
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggttttgagcctatgtca 826
||||||||||||||||||||||||||||||||||||| |||||||||| | | | ||| |
Sbjct: 114 tctacgaagagtggagtggcagggcttgaggttgaactaccaggttttaaacttgtgtga 173
Query: 827 aagtgtgcagtcggcgaaccatttctcaacaacccatgatgatgttgtctacctggccta 886
|||||||||| ||| ||||||||||||||| | |||||||||||||| ||||||| ||
Sbjct: 174 gagtgtgcagttggccaaccatttctcaacagctgatgatgatgttgtcgacctggcata 233
Query: 887 ctttttgccgatgaagccacgcaaataaacaatgcaaagcctattagattggctggacaa 946
||| || |||||||||| ||||||| ||||||||||||||||||||||||||| || |
Sbjct: 234 ttttctgttgatgaagccaggcaaatatacaatgcaaagcctattagattggctgaac-a 292
Query: 947 atcatacggtcctgtgataagcaaacaacccacta 981
||||||||| || ||| |||||| ||||||||||
Sbjct: 293 atcatacggccccgtgttaagcagtcaacccacta 327
Score = 97.6 bits (49), Expect = 2e-018
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1015 caaacagatgccatggcatcttgctgctgttgtattgaaataatactgctacaatattac 1074
||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |||
Sbjct: 422 caaacagatgccatggcatcttgttgctgttgtactgcaataatactgctacaata-tac 480
Query: 1075 cggtttcatcacc 1087
||||| |||||||
Sbjct: 481 cggttacatcacc 493
>gb|CW439406.1|CW439406 fsbb001f157i12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f157i12, DNA
sequence
Length = 783
Score = 307 bits (155), Expect = 1e-081
Identities = 246/275 (89%), Gaps = 1/275 (0%)
Strand = Plus / Plus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 467 aggctgggaaaaggagagctgagaaaaggcataggttcatggaggactttgtggctgaat 526
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggttttgagcctatgtca 826
||||||||||||||||||||||||||||||||||||| |||||||||| | | | ||| |
Sbjct: 527 tctacgaagagtggagtggcagggcttgaggttgaactaccaggttttaaacttgtgtga 586
Query: 827 aagtgtgcagtcggcgaaccatttctcaacaacccatgatgatgttgtctacctggccta 886
|||||||||| ||| ||||||||||||||| | |||||||||||||| ||||||| ||
Sbjct: 587 gagtgtgcagttggccaaccatttctcaacagctgatgatgatgttgtcgacctggcata 646
Query: 887 ctttttgccgatgaagccacgcaaataaacaatgcaaagcctattagattggctggacaa 946
||| || |||||||||| ||||||| ||||||||||||||||||||||||||| || |
Sbjct: 647 ttttctgttgatgaagccaggcaaatatacaatgcaaagcctattagattggctgaac-a 705
Query: 947 atcatacggtcctgtgataagcaaacaacccacta 981
||||||||| || ||| |||||| ||||||||||
Sbjct: 706 atcatacggccccgtgttaagcagtcaacccacta 740
Score = 200 bits (101), Expect = 2e-049
Identities = 107/109 (98%)
Strand = Plus / Plus
Query: 601 cgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagacatcaatcaat 660
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtgataacttgtcaaaggaaaagtacatgtccaaggaagagaagcagacatcaatcaat 60
Query: 661 cattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 709
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 109
>gb|CW098369.1|CW098369 104_464_11002968_116_34361_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002968, DNA
sequence
Length = 476
Score = 299 bits (151), Expect = 3e-079
Identities = 236/263 (89%), Gaps = 1/263 (0%)
Strand = Plus / Minus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 aggctgggaaaaggagagctgagaaaaggcataggttcatggaggactttgtggctgaat 203
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggttttgagcctatgtca 826
||||||||||||||||||||||||||||||||||||| |||||||||| | | | ||| |
Sbjct: 202 tctacgaagagtggagtggcagggcttgaggttgaactaccaggttttaaacttgtgtga 143
Query: 827 aagtgtgcagtcggcgaaccatttctcaacaacccatgatgatgttgtctacctggccta 886
|||||||||| ||| ||||||||||||||| | |||||||||||||| ||||||| ||
Sbjct: 142 gagtgtgcagttggccaaccatttctcaacagctgatgatgatgttgtcgacctggcata 83
Query: 887 ctttttgccgatgaagccacgcaaataaacaatgcaaagcctattagattggctggacaa 946
||| || |||||||||| ||||||| ||||||||||||||||||||||||||| || |
Sbjct: 82 ttttctgttgatgaagccaggcaaatatacaatgcaaagcctattagattggctgaac-a 24
Query: 947 atcatacggtcctgtgataagca 969
||||||||| || ||| ||||||
Sbjct: 23 atcatacggccccgtgttaagca 1
>gb|CL153568.1|CL153568 104_338_10780804_114_31369_052 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780804, DNA
sequence
Length = 750
Score = 297 bits (150), Expect = 1e-078
Identities = 171/178 (96%)
Strand = Plus / Minus
Query: 532 ggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctaga 591
||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct: 650 ggtattgcaaggtgctttacatatggtgggagcaagaacagcgcattgcatgatcctcga 591
Query: 592 attctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagaca 651
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 590 attctgccacgtgataacttgtcaaaggaaaagtacatgtccaaggaagagaagcagaca 531
Query: 652 tcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagagg 473
Score = 182 bits (92), Expect = 5e-044
Identities = 104/108 (96%)
Strand = Plus / Minus
Query: 707 aggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaat 766
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 115 aggctgggaaaaggagagctgagaaaaggcataggttcatggaggactttgtggctgaat 56
Query: 767 tctacgaagagtggagtggcagggcttgaggttgaacaaccaggtttt 814
||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 55 tctacgaagagtggagtggcagggcttgaggttgaactaccagttttt 8
>gb|CL150387.1|CL150387 104_332_10778494_116_31358_046 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778494, DNA
sequence
Length = 633
Score = 246 bits (124), Expect = 4e-063
Identities = 145/152 (95%)
Strand = Plus / Plus
Query: 133 gcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgcctcc 192
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 58 gcggcggtgcggcaagcggaggagctggtggagagggagatgggcgggcgcgacgcctcc 117
Query: 193 cacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccgaagag 252
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 118 cacgacgccgcgcacgcgctccgcgtccgggacctcgcgctctcgctcgcagccgaagag 177
Query: 253 ggcctctccgctcccgaccgcctcctcaccgt 284
||||||||||| ||| |||||||||||||||
Sbjct: 178 ggcctctccgcccccagccgcctcctcaccgt 209
Score = 56.0 bits (28), Expect = 7e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 283 gtggaactggccgctctcctgcacgacgttgg 314
|||||||||||| |||||||||||||||||||
Sbjct: 312 gtggaactggcctctctcctgcacgacgttgg 343
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 313 ggagattacaagtataccaag 333
|||||||||||||||||||||
Sbjct: 440 ggagattacaagtataccaag 460
>gb|CL150390.1|CL150390 104_332_10778496_116_31358_048 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778496, DNA
sequence
Length = 332
Score = 238 bits (120), Expect = 9e-061
Identities = 144/152 (94%)
Strand = Plus / Plus
Query: 133 gcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcgatgcctcc 192
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 58 gcggcggtgcggcaagcggaggagctggtggagagggagatgggcgggcgcgacgcctcc 117
Query: 193 cacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagccgaagag 252
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct: 118 cacgacgccgcgcacgcgctccgcgtccgggacctcgcgctctcgctcgcagccgatgag 177
Query: 253 ggcctctccgctcccgaccgcctcctcaccgt 284
||||||||||| ||| |||||||||||||||
Sbjct: 178 ggcctctccgcccccagccgcctcctcaccgt 209
>gb|CW290641.1|CW290641 104_770_11413123_148_35561_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413123, DNA
sequence
Length = 623
Score = 222 bits (112), Expect = 5e-056
Identities = 200/228 (87%), Gaps = 1/228 (0%)
Strand = Plus / Minus
Query: 754 tttgtggctgaattctacgaagagtggagtggcagggcttgaggttgaacaaccaggttt 813
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 622 tttgtggctgaattttacgaagagtggagtggcagggcttgaggttgaactaccaggttt 563
Query: 814 tgagcctatgtcaaagtgtgcagtcggcgaaccatttctcaacaacccatgatgatgttg 873
| | | | ||| | |||||||||| ||| ||||||||||||||| | ||||||||||||
Sbjct: 562 taaacttgtgtgagagtgtgcagttggccaaccatttctcaacagctgatgatgatgttg 503
Query: 874 tctacctggcctactttttgccgatgaagccacgcaaataaacaatgcaaagcctattag 933
|| ||||||| || ||| || |||||||||| ||||||| |||||||||||||||||||
Sbjct: 502 tcgacctggcatattttctgttgatgaagccaggcaaatatacaatgcaaagcctattag 443
Query: 934 attggctggacaaatcatacggtcctgtgataagcaaacaacccacta 981
|||||||| || |||||||||| || ||| |||||| ||||||||||
Sbjct: 442 attggctgaac-aatcatacggccccgtgttaagcagtcaacccacta 396
Score = 97.6 bits (49), Expect = 2e-018
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 1015 caaacagatgccatggcatcttgctgctgttgtattgaaataatactgctacaatattac 1074
||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |||
Sbjct: 301 caaacagatgccatggcatcttgttgctgttgtactgcaataatactgctacaata-tac 243
Query: 1075 cggtttcatcacc 1087
||||| |||||||
Sbjct: 242 cggttacatcacc 230
>gb|CL150386.1|CL150386 104_332_10778494_114_31357_046 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778494, DNA
sequence
Length = 623
Score = 155 bits (78), Expect = 1e-035
Identities = 96/102 (94%)
Strand = Plus / Minus
Query: 333 gaacaatgtggaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggatga 392
||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 359 gaacaatgtggaggacatgagcgtcgtggagacgtttcttcaagaggtaggattggatga 300
Query: 393 aggccaaaaggatgaaatagtggcaattattaaggggatggg 434
|| ||| ||||||||||||||||| |||||||||||||||||
Sbjct: 299 agcccagaaggatgaaatagtggcgattattaaggggatggg 258
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 313 ggagattacaagtataccaag 333
|||||||||||||||||||||
Sbjct: 573 ggagattacaagtataccaag 553
>gb|CL153569.1|CL153569 104_338_10780804_116_31370_052 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780804, DNA
sequence
Length = 706
Score = 109 bits (55), Expect = 6e-022
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 533 gtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctagaa 592
|||||||||| || |||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct: 628 gtattgcaaggtgctttacatatggtgggagcaagaacagcgcattgcatgatcctcgaa 687
Query: 593 ttctgccacgtgata 607
|||||||||||||||
Sbjct: 688 ttctgccacgtgata 702
>gb|CF072861.1|CF072861 FE1_26_G02.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_26_G02_A002 3', mRNA sequence
Length = 435
Score = 97.6 bits (49), Expect = 2e-018
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 1015 caaacagatgccatggcatcttgctgctgttgtattgaaataatactgctacaatattac 1074
||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |||
Sbjct: 421 caaacagatgccatggcatcttgttgctgttgtactgcaataatactgctacaata-tac 363
Query: 1075 cggtttcatcacc 1087
||||| |||||||
Sbjct: 362 cggttacatcacc 350
>gb|CF072818.1|CF072818 FE1_26_B01.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_26_B01_A002 3', mRNA sequence
Length = 437
Score = 89.7 bits (45), Expect = 5e-016
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 1015 caaacagatgccatggcatcttgctgctgttgtattgaaataatactgctacaatattac 1074
||||||||||||||||||||||| ||||| |||| || |||||||||||||||||| |||
Sbjct: 423 caaacagatgccatggcatcttgttgctggtgtactgcaataatactgctacaata-tac 365
Query: 1075 cggtttcatcacc 1087
||||| |||||||
Sbjct: 364 cggttacatcacc 352
>gb|CL171605.1|CL171605 104_373_10889543_148_31776_215 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889543, DNA
sequence
Length = 747
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 127 atggcggcggcggtgcggcgagcgg 151
||||||||||||||||| |||||||
Sbjct: 299 atggcggcggcggtgcgacgagcgg 275
>gb|CW200403.1|CW200403 104_625_11184048_116_36864_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184048, DNA
sequence
Length = 708
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 127 atggcggcggcggtgcggcgagcgg 151
||||||||||||||||| |||||||
Sbjct: 334 atggcggcggcggtgcgacgagcgg 310
>gb|CW254656.1|CW254656 104_718_11225796_148_35117_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225796, DNA
sequence
Length = 683
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 127 atggcggcggcggtgcggcgagcgg 151
||||||||||||||||| |||||||
Sbjct: 247 atggcggcggcggtgcgacgagcgg 223
>gb|CW489430.1|CW489430 fsbb001f274f21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274f21, DNA
sequence
Length = 675
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 570 ggtggagagggagatgggcgg 550
>gb|BE125757.1|BE125757 DG1_55_G10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 292
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 277 ggtggagagggagatgggcgg 257
>gb|BE366199.1|BE366199 PI1_31_E01.b2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 583
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 268 ggtggagagggagatgggcgg 248
>gb|BG103952.1|BG103952 RHIZ2_38_F06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 452
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 104 ggtggagagggagatgggcgg 84
>gb|BG322436.1|BG322436 EM1_24_H10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 561
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 127 atggcggcggcggtgcggcgagcgg 151
||||||||||||||||| |||||||
Sbjct: 192 atggcggcggcggtgcgacgagcgg 168
>gb|BG322777.1|BG322777 EM1_14_B02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 416
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 229 ggtggagagggagatgggcgg 209
>gb|CB927269.1|CB927269 ABA1_14_C05.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_14_C05_A012 5', mRNA sequence
Length = 576
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 277 ggtggagagggagatgggcgg 257
>gb|CB929201.1|CB929201 ABA1_40_C09.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_40_C09_A012 5', mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 267 ggtggagagggagatgggcgg 247
>gb|CD204901.1|CD204901 HS1_10_F03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_10_F03_A012 5', mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 277 ggtggagagggagatgggcgg 257
>gb|CD205020.1|CD205020 HS1_11_A04.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_11_A04_A012 5', mRNA sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 247 ggtggagagggagatgggcgg 227
>gb|CD206586.1|CD206586 HS1_23_E04.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_23_E04_A012 5', mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 288 ggtggagagggagatgggcgg 268
>gb|CD206854.1|CD206854 HS1_25_C11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_25_C11_A012 5', mRNA sequence
Length = 659
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 328 ggtggagagggagatgggcgg 308
>gb|CD209167.1|CD209167 HS1_46_A03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_46_A03_A012 5', mRNA sequence
Length = 601
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 286 ggtggagagggagatgggcgg 266
>gb|CD210341.1|CD210341 HS1_50_D06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_50_D06_A012 5', mRNA sequence
Length = 621
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 277 ggtggagagggagatgggcgg 257
>gb|CD212612.1|CD212612 HS1_6_D12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_6_D12_A012 5', mRNA sequence
Length = 710
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 280 ggtggagagggagatgggcgg 260
>gb|CD212679.1|CD212679 HS1_6_A06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_6_A06_A012 5', mRNA sequence
Length = 597
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 280 ggtggagagggagatgggcgg 260
>gb|CD213816.1|CD213816 HS1_53_C05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_53_C05_A012 5', mRNA sequence
Length = 610
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 280 ggtggagagggagatgggcgg 260
>gb|CD225517.1|CD225517 CCC1_3_G11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_3_G11_A007 5', mRNA sequence
Length = 601
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 284 ggtggagagggagatgggcgg 264
>gb|CD230022.1|CD230022 SS1_40_G02.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_40_G02_A012 5', mRNA sequence
Length = 344
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 280 ggtggagagggagatgggcgg 260
>gb|CD230323.1|CD230323 SS1_42_A03.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_42_A03_A012 5', mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 280 ggtggagagggagatgggcgg 260
>gb|CD230330.1|CD230330 SS1_42_B10.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_42_B10_A012 5', mRNA sequence
Length = 679
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 277 ggtggagagggagatgggcgg 257
>gb|CD431758.1|CD431758 ETH1_10_E05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_10_E05_A002 5', mRNA sequence
Length = 633
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 286 ggtggagagggagatgggcgg 266
>gb|CF427614.1|CF427614 PH1_16_C11.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_16_C11_A002 5', mRNA sequence
Length = 566
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 361 ggtggagagggagatgggcgg 341
>gb|CF427751.1|CF427751 PH1_10_D09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_10_D09_A002 5', mRNA sequence
Length = 705
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 322 ggtggagagggagatgggcgg 302
>gb|CF431176.1|CF431176 NIT1_6_C10.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_6_C10_A002 5', mRNA sequence
Length = 407
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 244 ggtggagagggagatgggcgg 224
>gb|CF487587.1|CF487587 POL1_44_E08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_44_E08_A002 5', mRNA sequence
Length = 715
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 377 ggtggagagggagatgggcgg 357
>gb|CN124930.1|CN124930 RHOH1_7_G03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_7_G03_A002 5', mRNA sequence
Length = 835
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 230 ggtggagagggagatgggcgg 210
>gb|CN128029.1|CN128029 RHOH1_26_C05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_C05_A002 5', mRNA sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 246 ggtggagagggagatgggcgg 226
>gb|CN134511.1|CN134511 OX1_26_G03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_G03_A002 5', mRNA sequence
Length = 768
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 219 ggtggagagggagatgggcgg 199
>gb|CN134639.1|CN134639 OX1_27_C05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_C05_A002 5', mRNA sequence
Length = 723
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 247 ggtggagagggagatgggcgg 227
>gb|CN139741.1|CN139741 OX1_23_G12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_23_G12_A002 5', mRNA sequence
Length = 735
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 263 ggtggagagggagatgggcgg 243
>gb|CX606953.1|CX606953 ANR1_5_H02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_H02_A002 5', mRNA sequence
Length = 683
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 159 ggtggagagggagatgggcgg 179
|||||||||||||||||||||
Sbjct: 264 ggtggagagggagatgggcgg 244
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 408,249
Number of Sequences: 832831
Number of extensions: 408249
Number of successful extensions: 107695
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107569
Number of HSP's gapped (non-prelim): 126
length of query: 1105
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1085
effective length of database: 474,703,049
effective search space: 515052808165
effective search space used: 515052808165
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)