BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203235.2.1
(637 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX618974.1|CX618974 GABR1_42_F12.g1_A002 GA- or brassino... 765 0.0
gb|CL150594.1|CL150594 104_332_10778645_116_31358_197 Sorgh... 268 6e-070
gb|CL176857.1|CL176857 104_383_10893412_116_31773_244 Sorgh... 268 6e-070
gb|CW156295.1|CW156295 104_559_11146609_148_36372_011 Sorgh... 260 1e-067
gb|CL188229.1|CL188229 104_404_10901450_114_32445_007 Sorgh... 246 2e-063
gb|CW227174.1|CW227174 104_665_11205274_148_37225_039 Sorgh... 246 2e-063
gb|CW306081.1|CW306081 104_791_11466644_116_36271_070 Sorgh... 246 2e-063
gb|CW412012.1|CW412012 fsbb001f107h06f0 Sorghum methylation... 246 2e-063
gb|CW306082.1|CW306082 104_791_11466644_148_36272_070 Sorgh... 210 1e-052
gb|CW412013.1|CW412013 fsbb001f107h06k0 Sorghum methylation... 109 3e-022
gb|CW309188.1|CW309188 104_797_11469065_116_35721_065 Sorgh... 94 2e-017
gb|CW309189.1|CW309189 104_797_11469065_148_35725_065 Sorgh... 94 2e-017
gb|CL152165.1|CL152165 104_335_10779768_116_31364_168 Sorgh... 88 1e-015
gb|CW474312.1|CW474312 fsbb001f230b16k0 Sorghum methylation... 88 1e-015
gb|BZ691344.1|BZ691344 SP__Ba0006M14.r SP__Ba Sorghum propi... 78 1e-012
gb|CW785005.1|CW785005 SP__Ba0006M14.r SP__Ba Sorghum propi... 78 1e-012
gb|CL152164.1|CL152164 104_335_10779768_114_31363_168 Sorgh... 58 1e-006
gb|CW300733.1|CW300733 104_784_11463826_116_36260_043 Sorgh... 46 0.004
gb|CW090675.1|CW090675 104_436_10949412_114_32607_038 Sorgh... 40 0.24
gb|CW148060.1|CW148060 104_542_11140216_148_35007_056 Sorgh... 40 0.24
gb|CW163289.1|CW163289 104_570_11151385_116_36449_001 Sorgh... 40 0.24
gb|CW320120.1|CW320120 104_813_11474847_148_35894_064 Sorgh... 40 0.24
gb|CW321865.1|CW321865 104_815_11475782_148_35943_057 Sorgh... 40 0.24
gb|CW330823.1|CW330823 104_827_11480580_116_36010_034 Sorgh... 40 0.24
gb|CW330824.1|CW330824 104_827_11480580_148_36009_034 Sorgh... 40 0.24
gb|CW358464.1|CW358464 fsbb001f025j22k0 Sorghum methylation... 40 0.24
gb|CW407332.1|CW407332 fsbb001f100m05k0 Sorghum methylation... 40 0.24
gb|CW408435.1|CW408435 fsbb001f102f07f0 Sorghum methylation... 40 0.24
gb|CD225611.1|CD225611 CCC1_40_E09.g1_A007 Callus culture/c... 40 0.24
gb|CF431736.1|CF431736 NIT1_10_B12.g1_A002 Nitrogen-deficie... 40 0.24
>gb|CX618974.1|CX618974 GABR1_42_F12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_42_F12_A002 5', mRNA sequence
Length = 622
Score = 765 bits (386), Expect = 0.0
Identities = 473/502 (94%)
Strand = Plus / Plus
Query: 132 ggtatgcgccgcacgtccagatggtgctggcgcagctgtgctacacgctcatgtacttca 191
|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ggtacgcgccgcacgtgctgatggtgctggcgcagctgtgctacacgctcatgtacttca 175
Query: 192 tcaccgaggccgccttcaaccagggtctcaacccctacgtctacatcacctaccgccatc 251
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 176 tcaccgaggccggcttcaaccaggggctcaacccctacgtctacatcacctaccgtcatc 235
Query: 252 tgctcgtcgccgtcctcatctggcccttcgcatactacctggagaaggggctgaggccta 311
||||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||
Sbjct: 236 tgctcgtcgccgtcctcatctggcccttcgcctactaccaggagaaagggttgaggccta 295
Query: 312 aaatgacgctcatgctgttcgtggagatattcgtgctctcccttctcggggtgagcttaa 371
|||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct: 296 aaatgacgctcatgctgttcatggagatatttgtgctctcgcttctcggggtgagcttaa 355
Query: 372 ctctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcgtcacttccgtgg 431
||||||||||||||||| ||||| |||||||||| ||||| ||||||||||| |||||||
Sbjct: 356 ctctgaacatgtacttcgcgagcttgaagtacacttccccgacgttcgtcacctccgtgg 415
Query: 432 tgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcaggatggagatcgtgg 491
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgaacaccattgcctcaatgacgttcgtcatcgccatcatcctcaggatggagatcgtgg 475
Query: 492 acgtgaagagcctacgcggggtcgccaaggtcgcagggaccgtggtgtcgttcgccgggg 551
|||||||||||||||||||| |||||||| |||||||||| |||||||| ||||| ||||
Sbjct: 476 acgtgaagagcctacgcgggctcgccaagatcgcagggacggtggtgtctttcgcggggg 535
Query: 552 tgaccaccatgactctgtacaaaggagcggccatcacgagcctctggaagtcgcctgttc 611
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 536 tgaccaccatgactctgtacaaaggagcagccatcaccagcctctggaagtcgcctgttc 595
Query: 612 agatcgccggcagcggcagcgg 633
| ||| ||||||||||||||||
Sbjct: 596 atatccccggcagcggcagcgg 617
>gb|CL150594.1|CL150594 104_332_10778645_116_31358_197 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778645, DNA
sequence
Length = 774
Score = 268 bits (135), Expect = 6e-070
Identities = 159/167 (95%)
Strand = Plus / Minus
Query: 132 ggtatgcgccgcacgtccagatggtgctggcgcagctgtgctacacgctcatgtacttca 191
|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ggtacgcgccgcacgtgctgatggtgctggcgcagctgtgctacacgctcatgtacttca 173
Query: 192 tcaccgaggccgccttcaaccagggtctcaacccctacgtctacatcacctaccgccatc 251
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 172 tcaccgaggccggcttcaaccaggggctcaacccctacgtctacatcacctaccgtcatc 113
Query: 252 tgctcgtcgccgtcctcatctggcccttcgcatactacctggagaag 298
||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 112 tgctcgtcgccgtcctcatctggcccttcgcctactaccaggagaag 66
>gb|CL176857.1|CL176857 104_383_10893412_116_31773_244 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893412, DNA
sequence
Length = 709
Score = 268 bits (135), Expect = 6e-070
Identities = 159/167 (95%)
Strand = Plus / Minus
Query: 132 ggtatgcgccgcacgtccagatggtgctggcgcagctgtgctacacgctcatgtacttca 191
|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ggtacgcgccgcacgtgctgatggtgctggcgcagctgtgctacacgctcatgtacttca 510
Query: 192 tcaccgaggccgccttcaaccagggtctcaacccctacgtctacatcacctaccgccatc 251
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 509 tcaccgaggccggcttcaaccaggggctcaacccctacgtctacatcacctaccgtcatc 450
Query: 252 tgctcgtcgccgtcctcatctggcccttcgcatactacctggagaag 298
||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 449 tgctcgtcgccgtcctcatctggcccttcgcctactaccaggagaag 403
Score = 93.7 bits (47), Expect = 2e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 303 tgaggcctaaaatgacgctcatgctgttcgtggagatattcgtgctctcccttctcggg 361
||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct: 256 tgaggcctaaaatgacgctcatgctgttcatggagatatttgtgctctcgcttctcggg 198
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 360 gggtgagcttaactctgaacatgta 384
|||||||||||||||||||||||||
Sbjct: 25 gggtgagcttaactctgaacatgta 1
>gb|CW156295.1|CW156295 104_559_11146609_148_36372_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146609, DNA
sequence
Length = 621
Score = 260 bits (131), Expect = 1e-067
Identities = 152/159 (95%)
Strand = Plus / Minus
Query: 140 ccgcacgtccagatggtgctggcgcagctgtgctacacgctcatgtacttcatcaccgag 199
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ccgcacgtgctgatggtgctggcgcagctgtgctacacgctcatgtacttcatcaccgag 453
Query: 200 gccgccttcaaccagggtctcaacccctacgtctacatcacctaccgccatctgctcgtc 259
|||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 452 gccggcttcaaccaggggctcaacccctacgtctacatcacctaccgtcatctgctcgtc 393
Query: 260 gccgtcctcatctggcccttcgcatactacctggagaag 298
||||||||||||||||||||||| ||||||| |||||||
Sbjct: 392 gccgtcctcatctggcccttcgcctactaccaggagaag 354
Score = 93.7 bits (47), Expect = 2e-017
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 303 tgaggcctaaaatgacgctcatgctgttcgtggagatattcgtgctctcccttctcggg 361
||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct: 207 tgaggcctaaaatgacgctcatgctgttcatggagatatttgtgctctcgcttctcggg 149
>gb|CL188229.1|CL188229 104_404_10901450_114_32445_007 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901450, DNA
sequence
Length = 694
Score = 246 bits (124), Expect = 2e-063
Identities = 151/160 (94%)
Strand = Plus / Plus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
Sbjct: 137 tcaggatggagatcgtggacgtgaagagcctacgcgggctcgccaagatcgcagggacgg 196
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaaggagcggccatcacgagcc 593
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 197 tggtgtctttcgcgggggtgaccaccatgactctgtacaaaggagcagccatcaccagcc 256
Query: 594 tctggaagtcgcctgttcagatcgccggcagcggcagcgg 633
||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 257 tctggaagtcgcctgttcatatccccggcagcggcagcgg 296
>gb|CW227174.1|CW227174 104_665_11205274_148_37225_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11205274, DNA
sequence
Length = 686
Score = 246 bits (124), Expect = 2e-063
Identities = 151/160 (94%)
Strand = Plus / Plus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
Sbjct: 114 tcaggatggagatcgtggacgtgaagagcctacgcgggctcgccaagatcgcagggacgg 173
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaaggagcggccatcacgagcc 593
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 174 tggtgtctttcgcgggggtgaccaccatgactctgtacaaaggagcagccatcaccagcc 233
Query: 594 tctggaagtcgcctgttcagatcgccggcagcggcagcgg 633
||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 234 tctggaagtcgcctgttcatatccccggcagcggcagcgg 273
>gb|CW306081.1|CW306081 104_791_11466644_116_36271_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466644, DNA
sequence
Length = 652
Score = 246 bits (124), Expect = 2e-063
Identities = 151/160 (94%)
Strand = Plus / Minus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
Sbjct: 299 tcaggatggagatcgtggacgtgaagagcctacgcgggctcgccaagatcgcagggacgg 240
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaaggagcggccatcacgagcc 593
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 239 tggtgtctttcgcgggggtgaccaccatgactctgtacaaaggagcagccatcaccagcc 180
Query: 594 tctggaagtcgcctgttcagatcgccggcagcggcagcgg 633
||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 179 tctggaagtcgcctgttcatatccccggcagcggcagcgg 140
Score = 180 bits (91), Expect = 1e-043
Identities = 112/119 (94%)
Strand = Plus / Minus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||
Sbjct: 548 gggtgagcttaactctgaacatgtacttcgcgagcttgaagtacacttccccgacgttcg 489
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 488 tcacctccgtggtgaacaccattgcctcaatgacgttcgtcatcgccatcatcctcagg 430
>gb|CW412012.1|CW412012 fsbb001f107h06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f107h06, DNA
sequence
Length = 806
Score = 246 bits (124), Expect = 2e-063
Identities = 151/160 (94%)
Strand = Plus / Plus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
Sbjct: 445 tcaggatggagatcgtggacgtgaagagcctacgcgggctcgccaagatcgcagggacgg 504
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaaggagcggccatcacgagcc 593
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 505 tggtgtctttcgcgggggtgaccaccatgactctgtacaaaggagcagccatcaccagcc 564
Query: 594 tctggaagtcgcctgttcagatcgccggcagcggcagcgg 633
||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 565 tctggaagtcgcctgttcatatccccggcagcggcagcgg 604
Score = 180 bits (91), Expect = 1e-043
Identities = 112/119 (94%)
Strand = Plus / Plus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||
Sbjct: 196 gggtgagcttaactctgaacatgtacttcgcgagcttgaagtacacttccccgacgttcg 255
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 256 tcacctccgtggtgaacaccattgcctcaatgacgttcgtcatcgccatcatcctcagg 314
>gb|CW306082.1|CW306082 104_791_11466644_148_36272_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466644, DNA
sequence
Length = 619
Score = 210 bits (106), Expect = 1e-052
Identities = 121/126 (96%)
Strand = Plus / Plus
Query: 173 tacacgctcatgtacttcatcaccgaggccgccttcaaccagggtctcaacccctacgtc 232
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 1 tacacgctcatgtacttcatcaccgaggccggcttcaaccaggggctcaacccctacgtc 60
Query: 233 tacatcacctaccgccatctgctcgtcgccgtcctcatctggcccttcgcatactacctg 292
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 61 tacatcacctaccgtcatctgctcgtcgccgtcctcatctggcccttcgcctactaccag 120
Query: 293 gagaag 298
||||||
Sbjct: 121 gagaag 126
Score = 174 bits (88), Expect = 6e-042
Identities = 109/116 (93%)
Strand = Plus / Plus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||
Sbjct: 504 gggtgagcttaactctgaacatgtacttcgcgagcttgaagtacacttccccgacgttcg 563
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctc 475
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 564 tcacctccgtggtgaacaccattgcctcaatgacgttcgtcatcgccatcatcctc 619
Score = 93.7 bits (47), Expect = 2e-017
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 303 tgaggcctaaaatgacgctcatgctgttcgtggagatattcgtgctctcccttctcggg 361
||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct: 273 tgaggcctaaaatgacgctcatgctgttcatggagatatttgtgctctcgcttctcggg 331
>gb|CW412013.1|CW412013 fsbb001f107h06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f107h06, DNA
sequence
Length = 680
Score = 109 bits (55), Expect = 3e-022
Identities = 70/75 (93%)
Strand = Plus / Minus
Query: 559 catgactctgtacaaaggagcggccatcacgagcctctggaagtcgcctgttcagatcgc 618
||||||||||||||||||||| |||||||| | ||||||||||||||||||||| ||| |
Sbjct: 680 catgactctgtacaaaggagcagccatcaccaccctctggaagtcgcctgttcatatccc 621
Query: 619 cggcagcggcagcgg 633
|||||||||||||||
Sbjct: 620 cggcagcggcagcgg 606
>gb|CW309188.1|CW309188 104_797_11469065_116_35721_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469065, DNA
sequence
Length = 678
Score = 93.7 bits (47), Expect = 2e-017
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 185 tacttcatcaccgaggccgccttcaaccagggtctcaacccctacgtctacatcacctac 244
||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct: 581 tacttcatcaccgaggccgccttcaacagggggctcaacccctacgtctacgtcacctac 522
Query: 245 cgc 247
|||
Sbjct: 521 cgc 519
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 303 tgaggcctaaaatgacgctcatgctgttcgtggagatattcgt 345
||||||||||||| || |||||||||||| | |||||||||||
Sbjct: 117 tgaggcctaaaatcacactcatgctgttcctagagatattcgt 75
>gb|CW309189.1|CW309189 104_797_11469065_148_35725_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469065, DNA
sequence
Length = 616
Score = 93.7 bits (47), Expect = 2e-017
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 185 tacttcatcaccgaggccgccttcaaccagggtctcaacccctacgtctacatcacctac 244
||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct: 495 tacttcatcaccgaggccgccttcaacagggggctcaacccctacgtctacgtcacctac 554
Query: 245 cgc 247
|||
Sbjct: 555 cgc 557
>gb|CL152165.1|CL152165 104_335_10779768_116_31364_168 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779768, DNA
sequence
Length = 696
Score = 87.7 bits (44), Expect = 1e-015
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||| |||||||| || |||| ||||||||||| ||| | | ||| | || ||||| |
Sbjct: 420 tcagaatggagattgtagacgccaagagcctacgagggatggtcaaaatagctgggacgg 361
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaaggagcggccatcacgagcc 593
|||| ||| ||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 360 tggtatcgctcgccggggcgaccaccatgactctgtacaaaggagaagcgatcacgagcc 301
Query: 594 tctggaag 601
|||||||
Sbjct: 300 actggaag 293
Score = 44.1 bits (22), Expect = 0.016
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 381 tgtacttcacgagcctgaagtacacgtccccaacgttcgtcacttccgtggtgaacacca 440
|||||||| ||||| | ||||||| || ||||| || |||||||| ||||||| |||
Sbjct: 682 tgtacttcgcgagcttagagtacacatctccaacatttgtcacttctatggtgaataccg 623
Query: 441 tcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|| | || || || || |||||||| ||||||||||||
Sbjct: 622 tcccttcaataacttttgtcatcgctatcatcctcagg 585
>gb|CW474312.1|CW474312 fsbb001f230b16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f230b16, DNA
sequence
Length = 504
Score = 87.7 bits (44), Expect = 1e-015
Identities = 107/128 (83%)
Strand = Plus / Plus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
|||| |||||||| || |||| ||||||||||| ||| | | ||| | || ||||| |
Sbjct: 274 tcagaatggagattgtagacgccaagagcctacgagggatggtcaaaatagctgggacgg 333
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaaggagcggccatcacgagcc 593
|||| ||| ||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 334 tggtatcgctcgccggggcgaccaccatgactctgtacaaaggagaagcgatcacgagcc 393
Query: 594 tctggaag 601
|||||||
Sbjct: 394 actggaag 401
Score = 44.1 bits (22), Expect = 0.016
Identities = 79/98 (80%)
Strand = Plus / Plus
Query: 381 tgtacttcacgagcctgaagtacacgtccccaacgttcgtcacttccgtggtgaacacca 440
|||||||| ||||| | ||||||| || ||||| || |||||||| ||||||| |||
Sbjct: 12 tgtacttcgcgagcttagagtacacatctccaacatttgtcacttctatggtgaataccg 71
Query: 441 tcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
|| | || || || || |||||||| ||||||||||||
Sbjct: 72 tcccttcaataacttttgtcatcgctatcatcctcagg 109
>gb|BZ691344.1|BZ691344 SP__Ba0006M14.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0006M14 3', DNA sequence
Length = 1127
Score = 77.8 bits (39), Expect = 1e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
||||||||||||| || ||||| |||| ||| || ||| | || ||| |||||||||||
Sbjct: 176 tcaggatggagattgtagacgtcaagaccctgcgagggctggcgaagatcgcagggacca 235
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaaggagcg 580
|||||||||| ||||||| ||||||||||| || |||| |||||||
Sbjct: 236 tggtgtcgttggccggggcgaccaccatgagcctttacagaggagcg 282
>gb|CW785005.1|CW785005 SP__Ba0006M14.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0006M14 3', DNA sequence
Length = 971
Score = 77.8 bits (39), Expect = 1e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 474 tcaggatggagatcgtggacgtgaagagcctacgcggggtcgccaaggtcgcagggaccg 533
||||||||||||| || ||||| |||| ||| || ||| | || ||| |||||||||||
Sbjct: 175 tcaggatggagattgtagacgtcaagaccctgcgagggctggcgaagatcgcagggacca 234
Query: 534 tggtgtcgttcgccggggtgaccaccatgactctgtacaaaggagcg 580
|||||||||| ||||||| ||||||||||| || |||| |||||||
Sbjct: 235 tggtgtcgttggccggggcgaccaccatgagcctttacagaggagcg 281
>gb|CL152164.1|CL152164 104_335_10779768_114_31363_168 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779768, DNA
sequence
Length = 708
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 298 ggggctgaggcctaaaatgacgctcatgctgttcgtggagatatt 342
|||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct: 145 ggggttgaggcctaaaatgacattcatgctgttcctggagatatt 189
Score = 46.1 bits (23), Expect = 0.004
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 360 gggtgagcttaactctgaacatgtacttcacgagcctgaagtacacgtccccaacgttcg 419
||||||||||| || ||| |||||||| ||||| | ||||||| || ||||| || |
Sbjct: 365 gggtgagcttaggtcctaacttgtacttcgcgagcttagagtacacatctccaacatttg 424
Query: 420 tcacttccgtggtgaacaccatcgcctcgatgacgttcgtcatcgccatcatcctcagg 478
||||||| ||||||| ||| || | || || || || |||||||| ||||||||||||
Sbjct: 425 tcacttctatggtgaataccgtcccttcaataacttttgtcatcgctatcatcctcagg 483
>gb|CW300733.1|CW300733 104_784_11463826_116_36260_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463826, DNA
sequence
Length = 760
Score = 46.1 bits (23), Expect = 0.004
Identities = 44/50 (88%), Gaps = 2/50 (4%)
Strand = Plus / Minus
Query: 158 ctggcgcagctgtgctacacgct--catgtacttcatcaccgaggccgcc 205
|||||||||||||||| | |||| ||||| ||| |||||||||||||||
Sbjct: 162 ctggcgcagctgtgcttcgcgctcacatgtcctttatcaccgaggccgcc 113
>gb|CW090675.1|CW090675 104_436_10949412_114_32607_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949412, DNA
sequence
Length = 675
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 agatggtgctggcgcagctg 169
||||||||||||||||||||
Sbjct: 246 agatggtgctggcgcagctg 265
>gb|CW148060.1|CW148060 104_542_11140216_148_35007_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140216, DNA
sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 617 gccggcagcggcagcggcgg 636
||||||||||||||||||||
Sbjct: 504 gccggcagcggcagcggcgg 485
>gb|CW163289.1|CW163289 104_570_11151385_116_36449_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151385, DNA
sequence
Length = 551
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 agatggtgctggcgcagctg 169
||||||||||||||||||||
Sbjct: 311 agatggtgctggcgcagctg 330
>gb|CW320120.1|CW320120 104_813_11474847_148_35894_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474847, DNA
sequence
Length = 742
Score = 40.1 bits (20), Expect = 0.24
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 206 ttcaaccagggtctcaacccctacgtctacatcacctaccgcca 249
||||||||||| | ||| |||||||||||||| |||||||||
Sbjct: 173 ttcaaccaggggatgaacacctacgtctacatcttctaccgcca 130
>gb|CW321865.1|CW321865 104_815_11475782_148_35943_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475782, DNA
sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 618 ccggcagcggcagcggcggc 637
||||||||||||||||||||
Sbjct: 455 ccggcagcggcagcggcggc 436
>gb|CW330823.1|CW330823 104_827_11480580_116_36010_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480580, DNA
sequence
Length = 691
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 615 tcgccggcagcggcagcggc 634
||||||||||||||||||||
Sbjct: 396 tcgccggcagcggcagcggc 377
>gb|CW330824.1|CW330824 104_827_11480580_148_36009_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480580, DNA
sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 615 tcgccggcagcggcagcggc 634
||||||||||||||||||||
Sbjct: 617 tcgccggcagcggcagcggc 636
>gb|CW358464.1|CW358464 fsbb001f025j22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f025j22, DNA
sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 618 ccggcagcggcagcggcggc 637
||||||||||||||||||||
Sbjct: 431 ccggcagcggcagcggcggc 412
>gb|CW407332.1|CW407332 fsbb001f100m05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100m05, DNA
sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 agatggtgctggcgcagctg 169
||||||||||||||||||||
Sbjct: 537 agatggtgctggcgcagctg 556
>gb|CW408435.1|CW408435 fsbb001f102f07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102f07, DNA
sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 618 ccggcagcggcagcggcggc 637
||||||||||||||||||||
Sbjct: 72 ccggcagcggcagcggcggc 91
>gb|CD225611.1|CD225611 CCC1_40_E09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_40_E09_A007 5', mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 agatggtgctggcgcagctg 169
||||||||||||||||||||
Sbjct: 85 agatggtgctggcgcagctg 104
>gb|CF431736.1|CF431736 NIT1_10_B12.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_10_B12_A002 5', mRNA sequence
Length = 398
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 617 gccggcagcggcagcggcgg 636
||||||||||||||||||||
Sbjct: 49 gccggcagcggcagcggcgg 68
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,339
Number of Sequences: 832831
Number of extensions: 192339
Number of successful extensions: 62537
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 62485
Number of HSP's gapped (non-prelim): 50
length of query: 637
length of database: 491,359,669
effective HSP length: 19
effective length of query: 618
effective length of database: 475,535,880
effective search space: 293881173840
effective search space used: 293881173840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)