BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619146.2.1
(636 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF587717.1|BF587717 FM1_39_G09.g1_A003 Floral-Induced Me... 484 e-135
gb|CN139927.1|CN139927 OX1_33_B02.b1_A002 Oxidatively-stres... 452 e-125
gb|CD429244.1|CD429244 ETH1_3_A10.b1_A002 Ethylene-treated ... 426 e-117
gb|BF588277.1|BF588277 FM1_39_G09.b1_A003 Floral-Induced Me... 365 3e-099
gb|BF481329.1|BF481329 FM1_18_F06.g1_A003 Floral-Induced Me... 291 4e-077
gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Me... 100 3e-019
gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2... 100 3e-019
gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Me... 92 7e-017
gb|BF587758.1|BF587758 FM1_33_B08.g1_A003 Floral-Induced Me... 88 1e-015
gb|CL185193.1|CL185193 104_399_10899358_116_32397_095 Sorgh... 72 7e-011
gb|AW677321.1|AW677321 DG1_5_C07.g1_A002 Dark Grown 1 (DG1)... 44 0.016
gb|BE361697.1|BE361697 DG1_81_F02.g1_A002 Dark Grown 1 (DG1... 40 0.24
gb|BE363303.1|BE363303 WS1_61_A11.g1_A002 Water-stressed 1 ... 40 0.24
gb|CX608982.1|CX608982 ANR1_10_A02.b1_A002 Anaerobic roots ... 40 0.24
>gb|BF587717.1|BF587717 FM1_39_G09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 490
Score = 484 bits (244), Expect = e-135
Identities = 312/334 (93%), Gaps = 3/334 (0%)
Strand = Plus / Minus
Query: 303 gagcctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcg 362
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 378 gagcgtcagatgaaggtccagttgacgagcatgagcgccaggcactgcggggcaccgtcg 319
Query: 363 tcgcccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgac 422
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 318 tcaccaaccaccttccacgccaccgcctgctcgtacgacgcctgccgccccatgctcgat 259
Query: 423 ctgcacacgccaccggggaggtacgccaggccctgctgcatgatcgcggggagctgcgcg 482
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 258 ctgcacacgccgccggggaggtacgccaggccctgctgcatgatcttggagagctgcgca 199
Query: 483 gacagggccttctggccctcctcgtcgaggaccgcctccagcggcaggtcctggatgttc 542
|||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 198 aacagggccttctggccgtcgtcgtcgaggacggcctccagcggcaggtcctggatgttc 139
Query: 543 accatcgtcgtctccaggatgtcgaagccggcgctgttggcgaacttgagcgtgaaagcc 602
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 accagggtcgtctccaggatgtcgaagccggcgctgttggcgaacttgagcgtgaaagc- 80
Query: 603 ggcggcttcagagagcagcagagtatcgcgtcgc 636
|||||||||||||||||||||||| |||||||
Sbjct: 79 --cggcttcagagagcagcagagtattgcgtcgc 48
Score = 42.1 bits (21), Expect = 0.061
Identities = 51/60 (85%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 229 caacggaaaagcaactaatgatacgtagta--aggcaaaaggcggcatccggtctggcgc 286
||||||||||||| ||||| |||| ||||| ||| ||||||| |||||| ||||||||
Sbjct: 472 caacggaaaagcagctaataatacatagtagtaggataaaggcgacatccgatctggcgc 413
>gb|CN139927.1|CN139927 OX1_33_B02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_B02_A002 3', mRNA sequence
Length = 694
Score = 452 bits (228), Expect = e-125
Identities = 308/334 (92%), Gaps = 3/334 (0%)
Strand = Plus / Minus
Query: 303 gagcctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcg 362
|||| ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||
Sbjct: 475 gagcgtcagatgaaggtccagttgacgagcatgagcgccaggcactgaggggcaccgtcg 416
Query: 363 tcgcccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgac 422
|| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 415 tcaccaaccaccttccacgccaccgcctgctcgtacgatgcctgccgccccatgctcgat 356
Query: 423 ctgcacacgccaccggggaggtacgccaggccctgctgcatgatcgcggggagctgcgcg 482
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 355 ctgcacacgccgccggggaggtacgccaggccctgctgcatgatcttggagagctgcgca 296
Query: 483 gacagggccttctggccctcctcgtcgaggaccgcctccagcggcaggtcctggatgttc 542
|||||||||||||||| || |||||||| || |||||||||||||||||||||||||||
Sbjct: 295 aacagggccttctggccgtcgtcgtcgagaacagcctccagcggcaggtcctggatgttc 236
Query: 543 accatcgtcgtctccaggatgtcgaagccggcgctgttggcgaacttgagcgtgaaagcc 602
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 235 accagggtcgtctccaggatgtcgaagccggcactgttggcgaacttgagcgtgaaagc- 177
Query: 603 ggcggcttcagagagcagcagagtatcgcgtcgc 636
|||||||||||||||||||||||| |||||||
Sbjct: 176 --cggcttcagagagcagcagagtattgcgtcgc 145
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 228 acaacggaaaagcaactaatgatacgtagta 258
|||||||||||||||||||| ||||||||||
Sbjct: 574 acaacggaaaagcaactaataatacgtagta 544
>gb|CD429244.1|CD429244 ETH1_3_A10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_3_A10_A002 3', mRNA sequence
Length = 560
Score = 426 bits (215), Expect = e-117
Identities = 281/303 (92%)
Strand = Plus / Minus
Query: 303 gagcctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcg 362
|||| ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||
Sbjct: 306 gagcgtcagatgaaggtccagttgacgagcatgagcgccaggcactgaggggcaccgtcg 247
Query: 363 tcgcccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgac 422
|| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 246 tcaccaaccaccttccacgccaccgcctgctcgtacgatgcctgccgccccatgctcgat 187
Query: 423 ctgcacacgccaccggggaggtacgccaggccctgctgcatgatcgcggggagctgcgcg 482
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 186 ctgcacacgccgccggggaggtacgccaggccctgctgcatgatcttggagagctgcgca 127
Query: 483 gacagggccttctggccctcctcgtcgaggaccgcctccagcggcaggtcctggatgttc 542
|||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 126 aacagggccttctggccgtcgtcgtcgaggacagcctccagcggcaggtcctggatgttc 67
Query: 543 accatcgtcgtctccaggatgtcgaagccggcgctgttggcgaacttgagcgtgaaagcc 602
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 66 accagggtcgtctccaggatgtcgaagccggcactgttggcgaacttgagcgtgaatgcc 7
Query: 603 ggc 605
|||
Sbjct: 6 ggc 4
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 228 acaacggaaaagcaactaatgatacgtagta 258
|||||||||||||||||||| ||||||||||
Sbjct: 405 acaacggaaaagcaactaataatacgtagta 375
>gb|BF588277.1|BF588277 FM1_39_G09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 474
Score = 365 bits (184), Expect = 3e-099
Identities = 234/250 (93%), Gaps = 3/250 (1%)
Strand = Plus / Minus
Query: 387 gcctgctcgtacgacgcctgccgccccatgctcgacctgcacacgccaccggggaggtac 446
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 470 gcctgctcgtacgacgcctgccgccccatgctcgatctgcacacgccgccggggaggtac 411
Query: 447 gccaggccctgctgcatgatcgcggggagctgcgcggacagggccttctggccctcctcg 506
||||||||||||||||||||| || ||||||||| |||||||||||||||| || |||
Sbjct: 410 gccaggccctgctgcatgatcttggagagctgcgcaaacagggccttctggccgtcgtcg 351
Query: 507 tcgaggaccgcctccagcggcaggtcctggatgttcaccatcgtcgtctccaggatgtcg 566
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 350 tcgaggacggcctccagcggcaggtcctggatgttcaccagggtcgtctccaggatgtcg 291
Query: 567 aagccggcgctgttggcgaacttgagcgtgaaagccggcggcttcagagagcagcagagt 626
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 290 aagccggcgctgttggcgaacttgagcgtgaaagc---cggcttcagagagcagcagagt 234
Query: 627 atcgcgtcgc 636
|| |||||||
Sbjct: 233 attgcgtcgc 224
>gb|BF481329.1|BF481329 FM1_18_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 423
Score = 291 bits (147), Expect = 4e-077
Identities = 192/207 (92%)
Strand = Plus / Minus
Query: 303 gagcctcagatgaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcg 362
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 207 gagcgtcagatgaaggtccagttgacgagcatgagcgccaggcactgcggggcaccgtcg 148
Query: 363 tcgcccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgac 422
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 147 tcaccaaccaccttccacgccaccgcctgctcgtacgacgcctgccgccccatgctcgat 88
Query: 423 ctgcacacgccaccggggaggtacgccaggccctgctgcatgatcgcggggagctgcgcg 482
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 87 ctgcacacgccgccggggaggtacgccaggccctgctgcatgatcttggagagctgcgca 28
Query: 483 gacagggccttctggccctcctcgtcg 509
|||||||||||||||| || ||||||
Sbjct: 27 aacagggccttctggccgtcgtcgtcg 1
Score = 42.1 bits (21), Expect = 0.061
Identities = 51/60 (85%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 229 caacggaaaagcaactaatgatacgtagta--aggcaaaaggcggcatccggtctggcgc 286
||||||||||||| ||||| |||| ||||| ||| ||||||| |||||| ||||||||
Sbjct: 301 caacggaaaagcagctaataatacatagtagtaggataaaggcgacatccgatctggcgc 242
>gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 510
Score = 99.6 bits (50), Expect = 3e-019
Identities = 104/122 (85%)
Strand = Plus / Minus
Query: 342 aggcactgcggggcgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgac 401
||||| ||||||| | ||||||||| || |||||||||||||| ||||||||||| |||
Sbjct: 291 aggcagtgcggggtgtcgtcgtcgctcaggaccttccacgccaccgcctgctcgtaggac 232
Query: 402 gcctgccgccccatgctcgacctgcacacgccaccggggaggtacgccaggccctgctgc 461
|| |||||||||| ||||| |||||||| |||||||||||||| | ||||||||||
Sbjct: 231 accggccgccccatactcgatacacacacgccgccggggaggtacgcgaagccctgctgc 172
Query: 462 at 463
||
Sbjct: 171 at 170
>gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 369
Score = 99.6 bits (50), Expect = 3e-019
Identities = 104/122 (85%)
Strand = Plus / Minus
Query: 342 aggcactgcggggcgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgac 401
||||| ||||||| | ||||||||| || |||||||||||||| ||||||||||| |||
Sbjct: 249 aggcagtgcggggtgtcgtcgtcgctcaggaccttccacgccaccgcctgctcgtaggac 190
Query: 402 gcctgccgccccatgctcgacctgcacacgccaccggggaggtacgccaggccctgctgc 461
|| |||||||||| ||||| |||||||| |||||||||||||| | ||||||||||
Sbjct: 189 accggccgccccatactcgatacacacacgccgccggggaggtacgcgaagccctgctgc 130
Query: 462 at 463
||
Sbjct: 129 at 128
>gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 567
Score = 91.7 bits (46), Expect = 7e-017
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 342 aggcactgcggggcgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgac 401
||||| ||||||| | ||||||||| || |||||||||||||| ||||||||||| |||
Sbjct: 404 aggcagtgcggggtgtcgtcgtcgctcaggaccttccacgccaccgcctgctcgtaggac 345
Query: 402 gcctgccgccccatgctcgacctgcacacgccaccggggaggtacgccaggccctgctgc 461
|| |||||||||| ||||| |||||||| ||||| |||||||| | ||||||||||
Sbjct: 344 accggccgccccatactcgatacacacacgccgccgggaaggtacgcgaagccctgctgc 285
Query: 462 at 463
||
Sbjct: 284 at 283
>gb|BF587758.1|BF587758 FM1_33_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 367
Score = 87.7 bits (44), Expect = 1e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 342 aggcactgcggggcgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgac 401
||||| ||||||| | ||||||||| || |||||||||||||| ||||||||||| |||
Sbjct: 343 aggcagtgcggggtgtcgtcgtcgctcaggaccttccacgccaccgcctgctcgtaggac 284
Query: 402 gcctgccgccccatgctcgacctgcacacgccaccggggaggtacgccaggccctg 457
|| |||||||||| ||||| |||||||| |||||||||||||| | ||||||
Sbjct: 283 accggccgccccatactcgatacacacacgccgccggggaggtacgcgaagccctg 228
>gb|CL185193.1|CL185193 104_399_10899358_116_32397_095 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899358, DNA
sequence
Length = 355
Score = 71.9 bits (36), Expect = 7e-011
Identities = 87/104 (83%)
Strand = Plus / Minus
Query: 342 aggcactgcggggcgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgac 401
||||| ||||||| | ||||||||| || |||||||||||||| ||||||||||| |||
Sbjct: 183 aggcagtgcggggtgtcgtcgtcgctcaggaccttccacgccaccgcctgctcgtaggac 124
Query: 402 gcctgccgccccatgctcgacctgcacacgccaccggggaggta 445
|| |||| ||||| ||||| |||||||| |||||||||||
Sbjct: 123 accggccgacccatactcgatacacacacgccgccggggaggta 80
>gb|AW677321.1|AW677321 DG1_5_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 226
Score = 44.1 bits (22), Expect = 0.016
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 229 caacggaaaagcaactaatgatacgtagta 258
||||||||||||||||||| |||| |||||
Sbjct: 69 caacggaaaagcaactaataatacctagta 40
>gb|BE361697.1|BE361697 DG1_81_F02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.24
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 371 caccttccacgccactgcctgctcgtacgacgcctgccgcccca 414
|||||||||||||| |||| |||||||||| || |||| ||||
Sbjct: 419 caccttccacgccagcgccttctcgtacgacaccggccggccca 376
>gb|BE363303.1|BE363303 WS1_61_A11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 666
Score = 40.1 bits (20), Expect = 0.24
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 371 caccttccacgccactgcctgctcgtacgacgcctgccgcccca 414
|||||||||||||| |||| |||||||||| || |||| ||||
Sbjct: 320 caccttccacgccagcgccttctcgtacgacaccggccggccca 277
>gb|CX608982.1|CX608982 ANR1_10_A02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_A02_A002 3', mRNA sequence
Length = 833
Score = 40.1 bits (20), Expect = 0.24
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 371 caccttccacgccactgcctgctcgtacgacgcctgccgcccca 414
|||||||||||||| |||| |||||||||| || |||| ||||
Sbjct: 623 caccttccacgccagcgccttctcgtacgacaccggccggccca 580
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 188,997
Number of Sequences: 832831
Number of extensions: 188997
Number of successful extensions: 52864
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52827
Number of HSP's gapped (non-prelim): 29
length of query: 636
length of database: 491,359,669
effective HSP length: 19
effective length of query: 617
effective length of database: 475,535,880
effective search space: 293405637960
effective search space used: 293405637960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)