BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440444.2.1
(237 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL185114.1|CL185114 104_398_10899301_116_32372_049 Sorgh... 293 4e-078
gb|CW364257.1|CW364257 fsbb001f036d15k0 Sorghum methylation... 293 4e-078
gb|CW476771.1|CW476771 fsbb001f233m10k0 Sorghum methylation... 293 4e-078
gb|CW470463.1|CW470463 fsbb001f223k20k0 Sorghum methylation... 198 2e-049
gb|CW397495.1|CW397495 fsbb001f086h12f0 Sorghum methylation... 163 9e-039
gb|CL185113.1|CL185113 104_398_10899301_114_32368_049 Sorgh... 123 7e-027
gb|CW345632.1|CW345632 104_848_11488598_116_36212_051 Sorgh... 119 1e-025
gb|CF485676.1|CF485676 POL1_33_A02.b1_A002 Pollen Sorghum b... 119 1e-025
gb|CX614140.1|CX614140 GABR1_12_G05.b1_A002 GA- or brassino... 119 1e-025
gb|CW397496.1|CW397496 fsbb001f086h12k0 Sorghum methylation... 117 5e-025
gb|CW404456.1|CW404456 fsbb001f096j16k0 Sorghum methylation... 92 3e-017
gb|AW922366.1|AW922366 DG1_18_D08.g1_A002 Dark Grown 1 (DG1... 92 3e-017
gb|BE358348.1|BE358348 DG1_29_F09.b1_A002 Dark Grown 1 (DG1... 92 3e-017
gb|CW281091.1|CW281091 104_756_11407983_116_35449_054 Sorgh... 66 1e-009
gb|CW090590.1|CW090590 104_436_10949365_116_32610_055 Sorgh... 44 0.005
gb|CW441132.1|CW441132 fsbb001f160c04f0 Sorghum methylation... 44 0.005
gb|CW468044.1|CW468044 fsbb001f219p23f0 Sorghum methylation... 44 0.005
gb|BE356658.1|BE356658 DG1_12_A04.b1_A002 Dark Grown 1 (DG1... 44 0.005
gb|CN136631.1|CN136631 OX1_44_H06.b1_A002 Oxidatively-stres... 44 0.005
gb|CN140560.1|CN140560 OX1_45_D03.b1_A002 Oxidatively-stres... 44 0.005
gb|CW202863.1|CW202863 104_629_11185322_148_36909_011 Sorgh... 38 0.34
gb|CW301233.1|CW301233 104_785_11464094_116_36263_063 Sorgh... 38 0.34
gb|CW483395.1|CW483395 fsbb001f245a09f0 Sorghum methylation... 38 0.34
gb|CW483396.1|CW483396 fsbb001f245a09k0 Sorghum methylation... 38 0.34
>gb|CL185114.1|CL185114 104_398_10899301_116_32372_049 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899301, DNA
sequence
Length = 679
Score = 293 bits (148), Expect = 4e-078
Identities = 214/236 (90%)
Strand = Plus / Plus
Query: 2 ctcaaacctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgat 61
||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 352 ctcaaacctaatctcgattgcatggttgtcaaccgtgaggaaatgagacccaatatcgat 411
Query: 62 caccttcctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacct 121
||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||| ||
Sbjct: 412 caccttcatgccatccgccctcaccctgctgaaatgctcacacggactgatgtcaaatct 471
Query: 122 gagcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgc 181
||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 472 gaggttggccgtctcccctgccttgagatgctggctcatgaacccaatcagctggcttgc 531
Query: 182 cgggcgaccttgtttcgtgtttggccagcggaggaacatgagcaccgagtgcttcc 237
||||| ||| |||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 532 tgggcggcctccattcgtgtttggccaccggaggaacatcagcgccgagtgcttcc 587
>gb|CW364257.1|CW364257 fsbb001f036d15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f036d15, DNA
sequence
Length = 713
Score = 293 bits (148), Expect = 4e-078
Identities = 214/236 (90%)
Strand = Plus / Plus
Query: 2 ctcaaacctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgat 61
||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 313 ctcaaacctaatctcgattgcatggttgtcaaccgtgaggaaatgagacccaatatcgat 372
Query: 62 caccttcctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacct 121
||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||| ||
Sbjct: 373 caccttcatgccatccgccctcaccctgctgaaatgctcacacggactgatgtcaaatct 432
Query: 122 gagcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgc 181
||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 433 gaggttggccgtctcccctgccttgagatgctggctcatgaacccaatcagctggcttgc 492
Query: 182 cgggcgaccttgtttcgtgtttggccagcggaggaacatgagcaccgagtgcttcc 237
||||| ||| |||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 493 tgggcggcctccattcgtgtttggccaccggaggaacatcagcgccgagtgcttcc 548
>gb|CW476771.1|CW476771 fsbb001f233m10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233m10, DNA
sequence
Length = 561
Score = 293 bits (148), Expect = 4e-078
Identities = 214/236 (90%)
Strand = Plus / Plus
Query: 2 ctcaaacctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgat 61
||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 161 ctcaaacctaatctcgattgcatggttgtcaaccgtgaggaaatgagacccaatatcgat 220
Query: 62 caccttcctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacct 121
||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||| ||
Sbjct: 221 caccttcatgccatccgccctcaccctgctgaaatgctcacacggactgatgtcaaatct 280
Query: 122 gagcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgc 181
||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 281 gaggttggccgtctcccctgccttgagatgctggctcatgaacccaatcagctggcttgc 340
Query: 182 cgggcgaccttgtttcgtgtttggccagcggaggaacatgagcaccgagtgcttcc 237
||||| ||| |||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 341 tgggcggcctccattcgtgtttggccaccggaggaacatcagcgccgagtgcttcc 396
>gb|CW470463.1|CW470463 fsbb001f223k20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223k20, DNA
sequence
Length = 470
Score = 198 bits (100), Expect = 2e-049
Identities = 202/236 (85%)
Strand = Plus / Minus
Query: 2 ctcaaacctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgat 61
||||| ||||||||| || ||||||||||| || ||| |||||||| ||||||||||||
Sbjct: 301 ctcaaccctaatctcgattgcatggttgtcacccgtgaggaaatgagccccaatatcgat 242
Query: 62 caccttcctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacct 121
| ||||| | |||||||||||||||||| |||||||| | ||| ||||||||||| ||
Sbjct: 241 ccccttcatcccatccgccctcaccctgctgaaatgctcccccggactgatgtcaaatct 182
Query: 122 gagcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgc 181
||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 gaggttgcccgtctcccctcccttgagatgctggctcatgaacccaatcagctggcttgc 122
Query: 182 cgggcgaccttgtttcgtgtttggccagcggaggaacatgagcaccgagtgcttcc 237
||||| ||| |||||||||| || ||||||| ||| ||| ||||||||||||
Sbjct: 121 tgggcgccctccattcgtgtttgccccccggaggaccatcagcgccgagtgcttcc 66
>gb|CW397495.1|CW397495 fsbb001f086h12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086h12, DNA
sequence
Length = 628
Score = 163 bits (82), Expect = 9e-039
Identities = 118/130 (90%)
Strand = Plus / Minus
Query: 108 ctgatgtcaaacctgagcttagccgtctcccctgccttgagatgctggctcctgaaccca 167
||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct: 627 ctgatgtcaaatctgaggttggccgtctcccctgccttgagatgctggctcatgaaccca 568
Query: 168 atcagctggcttgccgggcgaccttgtttcgtgtttggccagcggaggaacatgagcacc 227
|||||||||||||| ||||| ||| |||||||||||||| ||||||||||| ||| ||
Sbjct: 567 atcagctggcttgctgggcggcctccattcgtgtttggccaccggaggaacatcagcgcc 508
Query: 228 gagtgcttcc 237
||||||||||
Sbjct: 507 gagtgcttcc 498
>gb|CL185113.1|CL185113 104_398_10899301_114_32368_049 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899301, DNA
sequence
Length = 638
Score = 123 bits (62), Expect = 7e-027
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 140 tgccttgagatgctggctcctgaacccaatcagctggcttgccgggcgaccttgtttcgt 199
||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||
Sbjct: 638 tgccttgagatgctggctcatgaacccaatcagctggcttgctgggcggcctccattcgt 579
Query: 200 gtttggccagcggaggaacatgagcaccgagtgcttcc 237
||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 578 gtttggccaccggaggaacatcagcgccgagtgcttcc 541
>gb|CW345632.1|CW345632 104_848_11488598_116_36212_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488598, DNA
sequence
Length = 676
Score = 119 bits (60), Expect = 1e-025
Identities = 144/172 (83%)
Strand = Plus / Plus
Query: 4 caaacctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgatca 63
|||| |||||||||| |||||| ||| ||||| ||| |||||| ||||| |||||||||
Sbjct: 102 caaaactaatctccagctcatgcttgccaaccttgaggaaatgtgaccctttatcgatca 161
Query: 64 ccttcctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacctga 123
|||| ||||| ||| |||||||||| |||||||| ||||||||| | |||||||| |
Sbjct: 162 cctttctgccgtcctgcctcaccctgctgaaatgctcacacgggctcacctcaaacctca 221
Query: 124 gcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagctg 175
| || ||| ||||||||||||||| ||||||||| |||||| ||||||||
Sbjct: 222 ggttcgccttctcccctgccttgatgtgctggctctggaacccgatcagctg 273
>gb|CF485676.1|CF485676 POL1_33_A02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_33_A02_A002 3', mRNA sequence
Length = 529
Score = 119 bits (60), Expect = 1e-025
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 4 caaacctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgatca 63
|||| |||||||||| |||||| ||| ||||| ||| |||||| ||||| |||||||||
Sbjct: 409 caaaactaatctccagctcatgcttgccaaccttgaggaaatgtgaccctttatcgatca 350
Query: 64 ccttcctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacctga 123
|||| ||||| ||| |||||||||| |||||||| ||||||||| | |||||||| |
Sbjct: 349 cctttctgccgtcctgcctcaccctgctgaaatgctcacacgggctcacctcaaacctca 290
Query: 124 gcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagctg 175
| || ||| ||||||||||||||| ||||||||| |||||| ||||||||
Sbjct: 289 ggttcgccttctcccctgccttgatgtgctggctctggaacccgatcagctg 238
>gb|CX614140.1|CX614140 GABR1_12_G05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_12_G05_A002 3', mRNA sequence
Length = 677
Score = 119 bits (60), Expect = 1e-025
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 4 caaacctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgatca 63
|||| |||||||||| |||||| ||| ||||| ||| |||||| ||||| |||||||||
Sbjct: 588 caaaactaatctccagctcatgcttgccaaccttgaggaaatgtgaccctttatcgatca 529
Query: 64 ccttcctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacctga 123
|||| ||||| ||| |||||||||| |||||||| ||||||||| | |||||||| |
Sbjct: 528 cctttctgccgtcctgcctcaccctgctgaaatgctcacacgggctcacctcaaacctca 469
Query: 124 gcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagctg 175
| || ||| ||||||||||||||| ||||||||| |||||| ||||||||
Sbjct: 468 ggttcgccttctcccctgccttgatgtgctggctctggaacccgatcagctg 417
>gb|CW397496.1|CW397496 fsbb001f086h12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086h12, DNA
sequence
Length = 600
Score = 117 bits (59), Expect = 5e-025
Identities = 90/99 (90%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 2 ctcaaacctaatctccatctcatggttgtcaaccatgaagaaatgagaccc-aatatcga 60
||||||||||||||| || |||||||||||||| ||| |||||||||||| ||||||||
Sbjct: 502 ctcaaacctaatctcgattgcatggttgtcaaccgtgaggaaatgagaccccaatatcga 561
Query: 61 tcaccttcctgccatccgccctcaccctggagaaatgct 99
|||||||| |||||||||||||||||||| ||||||||
Sbjct: 562 tcaccttcatgccatccgccctcaccctgctgaaatgct 600
>gb|CW404456.1|CW404456 fsbb001f096j16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096j16, DNA
sequence
Length = 728
Score = 91.7 bits (46), Expect = 3e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 33 accatgaagaaatgagacccaatatcgatcaccttcctgccatccgccctcaccctggag 92
||||||| |||||||||||| | |||||||||||| |||| ||||||||| ||| | |
Sbjct: 424 accatgaggaaatgagaccctctgtcgatcaccttcttgccgtccgccctcgcccggctg 365
Query: 93 aaatgcttacacgggctgatgtcaaacctgagcttagccgtctcccctgccttgagatgc 152
|| || | ||||| |||| |||||||||| || ||| ||||||||||||||| |||
Sbjct: 364 aagtgttcgcacggcctgacatcaaacctgacgttggccttctcccctgccttgatgtgc 305
Query: 153 tggctcctgaacccaatcagctggct 178
|||||| ||||||| |||||||||||
Sbjct: 304 tggctcgtgaacccgatcagctggct 279
>gb|AW922366.1|AW922366 DG1_18_D08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 488
Score = 91.7 bits (46), Expect = 3e-017
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 33 accatgaagaaatgagacccaatatcgatcaccttcctgccatccgccctcaccctggag 92
||||||| |||||||||||| | |||||||||||| |||| ||||||||| ||| | |
Sbjct: 232 accatgaggaaatgagaccctctgtcgatcaccttcttgccgtccgccctcgcccggctg 173
Query: 93 aaatgcttacacgggctgatgtcaaacctgagcttagccgtctcccctgccttgagatgc 152
|| || | ||||| |||| |||||||||| || ||| ||||||||||||||| |||
Sbjct: 172 aagtgttcgcacggcctgacatcaaacctgacgttggccttctcccctgccttgatgtgc 113
Query: 153 tggctcctgaacccaatcagctggct 178
|||||| ||||||| |||||||||||
Sbjct: 112 tggctcgtgaacccgatcagctggct 87
>gb|BE358348.1|BE358348 DG1_29_F09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 91.7 bits (46), Expect = 3e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 33 accatgaagaaatgagacccaatatcgatcaccttcctgccatccgccctcaccctggag 92
||||||| |||||||||||| | |||||||||||| |||| ||||||||| ||| | |
Sbjct: 292 accatgaggaaatgagaccctctgtcgatcaccttcttgccgtccgccctcgcccggctg 351
Query: 93 aaatgcttacacgggctgatgtcaaacctgagcttagccgtctcccctgccttgagatgc 152
|| || | ||||| |||| |||||||||| || ||| ||||||||||||||| |||
Sbjct: 352 aagtgttcgcacggcctgacatcaaacctgacgttggccttctcccctgccttgatgtgc 411
Query: 153 tggctcctgaacccaatcagctggct 178
|||||| ||||||| |||||||||||
Sbjct: 412 tggctcgtgaacccgatcagctggct 437
>gb|CW281091.1|CW281091 104_756_11407983_116_35449_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407983, DNA
sequence
Length = 679
Score = 65.9 bits (33), Expect = 1e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 114 tcaaacctgagcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagc 173
|||||||||| || ||| ||||||||||||||| ||||||||| ||||||| ||||||
Sbjct: 42 tcaaacctgacgttggccttctcccctgccttgatgtgctggctcgtgaacccgatcagc 101
Query: 174 tggct 178
|||||
Sbjct: 102 tggct 106
>gb|CW090590.1|CW090590 104_436_10949365_116_32610_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949365, DNA
sequence
Length = 675
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 atcgatcaccttcctgccatcc 77
||||||||||||||||||||||
Sbjct: 79 atcgatcaccttcctgccatcc 100
>gb|CW441132.1|CW441132 fsbb001f160c04f0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f160c04, DNA
sequence
Length = 579
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 atcgatcaccttcctgccatcc 77
||||||||||||||||||||||
Sbjct: 69 atcgatcaccttcctgccatcc 90
>gb|CW468044.1|CW468044 fsbb001f219p23f0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f219p23, DNA
sequence
Length = 509
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 atcgatcaccttcctgccatcc 77
||||||||||||||||||||||
Sbjct: 38 atcgatcaccttcctgccatcc 59
>gb|BE356658.1|BE356658 DG1_12_A04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 atcgatcaccttcctgccatcc 77
||||||||||||||||||||||
Sbjct: 483 atcgatcaccttcctgccatcc 462
>gb|CN136631.1|CN136631 OX1_44_H06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_44_H06_A002 3', mRNA sequence
Length = 772
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 atcgatcaccttcctgccatcc 77
||||||||||||||||||||||
Sbjct: 451 atcgatcaccttcctgccatcc 430
>gb|CN140560.1|CN140560 OX1_45_D03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_45_D03_A002 3', mRNA sequence
Length = 614
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 atcgatcaccttcctgccatcc 77
||||||||||||||||||||||
Sbjct: 377 atcgatcaccttcctgccatcc 356
>gb|CW202863.1|CW202863 104_629_11185322_148_36909_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185322, DNA
sequence
Length = 465
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 36 atgaagaaatgagacccaa 54
|||||||||||||||||||
Sbjct: 408 atgaagaaatgagacccaa 426
>gb|CW301233.1|CW301233 104_785_11464094_116_36263_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464094, DNA
sequence
Length = 634
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 36 atgaagaaatgagacccaa 54
|||||||||||||||||||
Sbjct: 302 atgaagaaatgagacccaa 284
>gb|CW483395.1|CW483395 fsbb001f245a09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245a09, DNA
sequence
Length = 652
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 36 atgaagaaatgagacccaa 54
|||||||||||||||||||
Sbjct: 476 atgaagaaatgagacccaa 494
>gb|CW483396.1|CW483396 fsbb001f245a09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245a09, DNA
sequence
Length = 759
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 36 atgaagaaatgagacccaa 54
|||||||||||||||||||
Sbjct: 322 atgaagaaatgagacccaa 304
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,018
Number of Sequences: 832831
Number of extensions: 53018
Number of successful extensions: 12669
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12634
Number of HSP's gapped (non-prelim): 31
length of query: 237
length of database: 491,359,669
effective HSP length: 19
effective length of query: 218
effective length of database: 475,535,880
effective search space: 103666821840
effective search space used: 103666821840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)