BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.9
(1195 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum b... 674 0.0
gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation... 527 e-148
gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorgh... 504 e-140
gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorgh... 478 e-133
gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation... 408 e-112
gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum b... 379 e-103
gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation... 371 e-100
gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum b... 343 2e-092
gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sor... 260 3e-067
gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum met... 252 6e-065
gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sor... 238 1e-060
gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum b... 234 2e-059
gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) So... 228 9e-058
gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum b... 204 1e-050
gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum m... 165 1e-038
gb|CW043993.1|CW043993 104_279_10508694_115_30247 Sorghum m... 153 4e-035
gb|CF486496.1|CF486496 POL1_38_B08.b1_A002 Pollen Sorghum b... 145 1e-032
gb|CF484935.1|CF484935 POL1_28_A11.g1_A002 Pollen Sorghum b... 133 4e-029
gb|CF481282.1|CF481282 POL1_71_C02.b1_A002 Pollen Sorghum b... 121 2e-025
gb|CF484277.1|CF484277 POL1_4_F09.b1_A002 Pollen Sorghum bi... 119 6e-025
gb|CW362554.1|CW362554 fsbb001f033k13f0 Sorghum methylation... 96 9e-018
gb|CW362555.1|CW362555 fsbb001f033k13k0 Sorghum methylation... 96 9e-018
gb|CW358545.1|CW358545 fsbb001f025l20k0 Sorghum methylation... 84 3e-014
gb|CW029106.1|CW029106 104_256_10499487_116_30400 Sorghum m... 60 5e-007
gb|CW371734.1|CW371734 fsbb001f047f12f0 Sorghum methylation... 60 5e-007
gb|CW473221.1|CW473221 fsbb001f228i05f0 Sorghum methylation... 60 5e-007
gb|CF485646.1|CF485646 POL1_32_F06.g1_A002 Pollen Sorghum b... 60 5e-007
gb|CW478499.1|CW478499 fsbb001f236g18k0 Sorghum methylation... 54 3e-005
gb|CW297869.1|CW297869 104_780_11462273_116_35646_075 Sorgh... 52 1e-004
gb|CW297870.1|CW297870 104_780_11462273_148_35650_075 Sorgh... 52 1e-004
gb|CW298476.1|CW298476 104_781_11462600_116_35659_030 Sorgh... 52 1e-004
gb|CW298477.1|CW298477 104_781_11462600_148_35655_030 Sorgh... 52 1e-004
gb|CL189048.1|CL189048 104_406_10902017_116_32471_079 Sorgh... 42 0.12
gb|CL190769.1|CL190769 104_409_10906310_114_32491_061 Sorgh... 42 0.12
gb|CL190770.1|CL190770 104_409_10906310_116_32499_061 Sorgh... 42 0.12
gb|CW472012.1|CW472012 fsbb001f226i03k0 Sorghum methylation... 42 0.12
gb|CW477133.1|CW477133 fsbb001f234f06f0 Sorghum methylation... 42 0.12
gb|CD208762.1|CD208762 HS1_44_C05.b1_A012 Heat-shocked seed... 42 0.12
gb|CD425186.1|CD425186 SA1_11_E10.b1_A002 Salicylic acid-tr... 42 0.12
gb|CD427044.1|CD427044 SA1_17_G03.b1_A002 Salicylic acid-tr... 42 0.12
gb|CW153312.1|CW153312 104_555_11144980_148_36341_016 Sorgh... 40 0.46
gb|BG817477.1|BG817477 EM1_76_D10.b1_A002 Embryo 1 (EM1) So... 40 0.46
gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots ... 40 0.46
>gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B08_A002 5', mRNA sequence
Length = 727
Score = 674 bits (340), Expect = 0.0
Identities = 445/480 (92%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 248 caaccaggccaggtccttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 307
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||||||||||||||| |||||||||||||| |||||||||| ||||| ||| || ||
Sbjct: 308 ggggtcgtaccactacgggcagatcaacatcacacgcaccatcaggctcggcatcgggcg 367
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgtggacccgga 183
|||||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct: 368 gggcaaggtggacggcaaggagcggttcggcatcaacggcgtgtcgcacgtggacccgga 427
Query: 184 aacccccgtcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacct 243
|||||||| ||||||||||||||||||||||||| |||||| |||||| ||||| ||||
Sbjct: 428 gacccccgtgaagctcgccgagtacttcaacgccaccgacggggtgttccagtacgacct 487
Query: 244 catcggggacgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccg 303
|||||| ||||||||||| |||| | || |||||||||||||| ||||||||| ||||
Sbjct: 488 catcggcgacgtgccgccagccaaatccgcgcccaccaagatggctcccaacgtcctccg 547
Query: 304 cgccgagttccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacac 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 548 cgccgagttccgcaccttcatcgaggtggtgttcgagaaccccgagaagagcatcgacac 607
Query: 364 catccacatcgacggctacgccttcttcgccgtcggcatgggcccgggcaaatggacgcc 423
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cttccacatcgacggctacgcattcttcgccgtcggcatgggcccgggcaaatggacgcc 667
Query: 424 agcgtcccggagcacgtacaacctcctggacacggtgagccggcacacgatccaggtgta 483
||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 668 agcgtgccggagtacgtacaacctcctggacacggtgagccggcacacggtccaggtgta 727
>gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 523
Score = 527 bits (266), Expect = e-148
Identities = 356/386 (92%)
Strand = Plus / Plus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtac 73
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 aggtccttccgctggaacctgacggcgagcgcggcgcggcccaacccgcaggggtcgtac 60
Query: 74 cactacggccagatcaacatcacccgcaccatcaagctcgccatgggccgcggcaaggtc 133
|||||||| |||||||||||||| |||||||||| ||||| ||| || || ||||||||
Sbjct: 61 cactacgggcagatcaacatcacacgcaccatcaggctcggcatcgggcggggcaaggtg 120
Query: 134 gacggcaaggagaggttcgccttcaacggcgtgtcgcacgtggacccggaaacccccgtc 193
|||||||||||| |||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 121 gacggcaaggagcggttcggcatcaacggcgtgtcgcacgtggacccggagacccccgtg 180
Query: 194 aagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcggggac 253
||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||| |||
Sbjct: 181 aagctcgccgagtacttcaacgccaccgacggggtgttccagtacgacctcatcggcgac 240
Query: 254 gtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagttc 313
|||||||| |||| | || |||||||||||||| ||||||||| ||||||||||||||
Sbjct: 241 gtgccgccagccaaatccgcgcccaccaagatggctcccaacgtcctccgcgccgagttc 300
Query: 314 cgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccacatc 373
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 301 cgcaccttcatcgaggtggtgttcgagaaccccgagaagagcatcgacaccttccacatc 360
Query: 374 gacggctacgccttcttcgccgtcgg 399
||||||||||| ||||||||||||||
Sbjct: 361 gacggctacgcattcttcgccgtcgg 386
Score = 58.0 bits (29), Expect = 2e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 399 gcatgggcccgggcaaatggacgccagcgtcccggag 435
|||||||||||||||||||||| ||||||| ||||||
Sbjct: 484 gcatgggcccgggcaaatggaccccagcgtgccggag 520
>gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 600
Score = 504 bits (254), Expect = e-140
Identities = 296/310 (95%)
Strand = Plus / Plus
Query: 399 gcatgggcccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacgg 458
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 212 gcatgggcccgggcaaatggacgccagcgtgccggagtacgtacaacctcctggacacgg 271
Query: 459 tgagccggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcg 518
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 272 tgagccggcacacggtccaggtgtacccgaggtcgtggacggcggtgatgatgacgttcg 331
Query: 519 acaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagc 578
||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct: 332 acaacgcgggcatgtggagtatccggtccaacatctgggagaggaattacctcggcgagc 391
Query: 579 agctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccgg 638
|||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 392 agctgtacatcagcgtcacctcgccggagcggtcgctcagggacgagtacaacatgccag 451
Query: 639 agactagcctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctctccg 698
|||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 452 agaccagcctccgctgcggcaaggtcgtcggcctgccactgccgccgtcctacctctccg 511
Query: 699 tctagagcat 708
||||||||||
Sbjct: 512 tctagagcat 521
Score = 186 bits (94), Expect = 3e-045
Identities = 106/110 (96%)
Strand = Plus / Plus
Query: 290 cccaacgtcatccgcgccgagttccgcaccttcatcgaggtggtcttcgagaaccccgag 349
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5 cccaacgtcctccgcgccgagttccgcaccttcatcgaggtggtgttcgagaaccccgag 64
Query: 350 aagagcatcgacaccatccacatcgacggctacgccttcttcgccgtcgg 399
||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 65 aagagcatcgacaccttccacatcgacggctacgcattcttcgccgtcgg 114
>gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 661
Score = 478 bits (241), Expect = e-133
Identities = 289/305 (94%)
Strand = Plus / Minus
Query: 404 ggcccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacggtgagc 463
|||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||
Sbjct: 647 ggcccgggcaaatgaacgccagcgtgccggagtacgtacaacctcctggacacgttgagc 588
Query: 464 cggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcgacaac 523
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 587 cggcacacggtccaggtgtacccgaggtcgtggacggcggtgatgatgacgttcgacaac 528
Query: 524 gcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagcagctg 583
|||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 527 gcgggcatgtggagtatccggtccaacatctgggagaggaattacctcggcgagcagctg 468
Query: 584 tacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccggagact 643
||| | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 467 tacatcagcgtcacctcgccggagcggtcgctcagggacgagtacaacatgccagagacc 408
Query: 644 agcctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctctccgtctag 703
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 407 agcctccgctgcggcaaggtcgtcggcctgccactgccgccgtcctacctctccgtctag 348
Query: 704 agcat 708
|||||
Sbjct: 347 agcat 343
Score = 46.1 bits (23), Expect = 0.007
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 975 cgtctcgaaccattgtaggag-ttaagtatatgat 1008
||||||||| ||||||||||| |||||||||||||
Sbjct: 35 cgtctcgaatcattgtaggagtttaagtatatgat 1
>gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236g18, DNA
sequence
Length = 593
Score = 408 bits (206), Expect = e-112
Identities = 293/322 (90%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 272 caaccaggccaggtccttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 331
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||||||||||||||| |||||||||||||| |||||||||| ||||| ||| || ||
Sbjct: 332 ggggtcgtaccactacgggcagatcaacatcacacgcaccatcaggctcggcatcgggcg 391
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgtggacccgga 183
|||||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct: 392 gggcaaggtggacggcaaggagcggttcggcatcaacggcgtgtcgcacgtggacccgga 451
Query: 184 aacccccgtcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacct 243
|||||||| ||||||||||||||||||||||||| |||||| |||||| ||||| ||||
Sbjct: 452 gacccccgtgaagctcgccgagtacttcaacgccaccgacggggtgttccagtacgacct 511
Query: 244 catcggggacgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccg 303
|||||| ||||||||||| |||| | || |||||||||||||| ||||||||| ||||
Sbjct: 512 catcggcgacgtgccgccagccaaatccgcgcccaccaagatggctcccaacgtcctccg 571
Query: 304 cgccgagttccgcaccttcatc 325
||||||||||||||||||||||
Sbjct: 572 cgccgagttccgcaccttcatc 593
>gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_E06_A002 3', mRNA sequence
Length = 691
Score = 379 bits (191), Expect = e-103
Identities = 224/235 (95%)
Strand = Plus / Plus
Query: 474 tccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcgacaacgcgggcatgt 533
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tccaggtgtacccgaggtcgtggacggcggtgatgatgacgttcgacaacgcgggcatgt 62
Query: 534 ggagcatccggtccaacatctgggagaggcagtacctcggcgagcagctgtacgtgagcg 593
|||| |||||||||||||||||||||||| | ||||||||||||||||||||| | ||||
Sbjct: 63 ggagtatccggtccaacatctgggagaggaattacctcggcgagcagctgtacatcagcg 122
Query: 594 tcatctcgccggagcggtcgctcagggacgagtacaacatgccggagactagcctccgct 653
||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 123 tcacctcgccggagcggtcgctcagggacgagtacaacatgccagagaccagcctccgct 182
Query: 654 gcggcaaggtcgtcggactgccaatgccgccgtcctacctctccgtctagagcat 708
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 183 gcggcaaggtcgtcggcctgccactgccgccgtcctacctctccgtctagagcat 237
Score = 145 bits (73), Expect = 1e-032
Identities = 102/108 (94%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 1002 atatgatgatatataatcctgtctatctaataagtccctcagccaaaaattgttctttat 1061
|||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 586 atatgatgatatataagcctgtctatctaataagtccctcagcc-aaaactgttctttat 644
Query: 1062 atttatgtatatgtacatgc--atgtctcctgattcaactttgatgtt 1107
| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 645 a-ttatgtatatgtacatgcatatgtctcctgattcaactttgatgtt 691
Score = 52.0 bits (26), Expect = 1e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 975 cgtctcgaaccattgtaggag-ttaagtatatgatgat 1011
||||||||| ||||||||||| ||||||||||||||||
Sbjct: 546 cgtctcgaatcattgtaggagtttaagtatatgatgat 583
>gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 558
Score = 371 bits (187), Expect = e-100
Identities = 260/281 (92%), Gaps = 3/281 (1%)
Strand = Plus / Minus
Query: 431 cggagcacgtacaacctcctggacac-ggtgagcc-ggcacacgatccaggtgtaccct- 487
||||| ||||||| |||||||||| | |||||||| |||||||| |||||||||||||
Sbjct: 558 cggagtacgtacaccctcctggaccccggtgagcccggcacacggtccaggtgtaccccg 499
Query: 488 aggtcgtggacggcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtcc 547
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 498 aggtcgtggacggcggtgatgatgacgttcgacaacgcgggcatgtggagtatccggtcc 439
Query: 548 aacatctgggagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggag 607
||||||||||||||| | | ||||||||||||||||||| | ||||||| ||||||||||
Sbjct: 438 aacatctgggagaggaattccctcggcgagcagctgtacatcagcgtcacctcgccggag 379
Query: 608 cggtcgctcagggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtc 667
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 378 cggtcgctcagggacgagtacaacatgccagagaccagcctccgctgcggcaaggtcgtc 319
Query: 668 ggactgccaatgccgccgtcctacctctccgtctagagcat 708
|| |||||| |||||||||| ||||||||||| ||||||||
Sbjct: 318 ggcctgccactgccgccgtcntacctctccgtntagagcat 278
>gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_F09_A002 3', mRNA sequence
Length = 658
Score = 343 bits (173), Expect = 2e-092
Identities = 206/217 (94%)
Strand = Plus / Plus
Query: 492 cgtggacggcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaaca 551
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 cgtggacggcggtgatgatgacgttcgacaacgcgggcatgtggagtatccggtccaaca 60
Query: 552 tctgggagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggt 611
||||||||||| | ||||||||||| ||||||||| | ||||||| ||||||||||||||
Sbjct: 61 tctgggagaggaattacctcggcgaacagctgtacatcagcgtcacctcgccggagcggt 120
Query: 612 cgctcagggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggac 671
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 121 cgctcagggacgagtacaacatgccagagaccagcctccgctgcggcaaggtcgtcggcc 180
Query: 672 tgccaatgccgccgtcctacctctccgtctagagcat 708
||||| |||||||||||||||||||||||||||||||
Sbjct: 181 tgccactgccgccgtcctacctctccgtctagagcat 217
Score = 121 bits (61), Expect = 2e-025
Identities = 90/96 (93%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 1002 atatgatgatatataatcctgtctatctaataagtccctcagccaaaaattgttctttat 1061
|||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 565 atatgatgatatataagcctgtctatctaataagtccctcagcc-aaaactgttctttat 623
Query: 1062 atttatgtatatgtacatgc--atgtctcctgattc 1095
| |||||||||||||||||| ||||||||||||||
Sbjct: 624 a-ttatgtatatgtacatgcatatgtctcctgattc 658
Score = 52.0 bits (26), Expect = 1e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 975 cgtctcgaaccattgtaggag-ttaagtatatgatgat 1011
||||||||| ||||||||||| ||||||||||||||||
Sbjct: 525 cgtctcgaatcattgtaggagtttaagtatatgatgat 562
>gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 437
Score = 260 bits (131), Expect = 3e-067
Identities = 224/255 (87%)
Strand = Plus / Plus
Query: 437 acgtacaacctcctggacacggtgagccggcacacgatccaggtgtaccctaggtcgtgg 496
||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 30 acgtacaacctgctggacgcggtgagccggcacacgatccaggtgtacccgaggtcatgg 89
Query: 497 acggcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaacatctgg 556
|||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 90 acggcgattatgctgacgttcgacaacgcgggcatgtggagcgtccggtccaacatctgg 149
Query: 557 gagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggtcgctc 616
||| | | |||||||| |||||| | ||| | ||||||||||||||||||| |||||
Sbjct: 150 gagcgctactacctcggggagcagttctacatcagcgtcatctcgccggagcactcgctg 209
Query: 617 agggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgcca 676
| |||||||||||||||||||| | ||||||||||||||||||||| || |||||
Sbjct: 210 cgcgacgagtacaacatgccggacaacgacctccgctgcggcaaggtcgtggggctgccg 269
Query: 677 atgccgccgtcctac 691
||||||||||||||
Sbjct: 270 ctgccgccgtcctac 284
>gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526807, DNA
sequence
Length = 622
Score = 252 bits (127), Expect = 6e-065
Identities = 223/255 (87%)
Strand = Plus / Minus
Query: 437 acgtacaacctcctggacacggtgagccggcacacgatccaggtgtaccctaggtcgtgg 496
||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 314 acgtacaacctgctggacgcggtgagccggcacacgatccaggtgtacccgaggtcatgg 255
Query: 497 acggcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaacatctgg 556
|||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 254 acggcgattatgctgacgttcgacaacgcgggcatgtggagcgtccggtccaacatctgg 195
Query: 557 gagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggtcgctc 616
||| | | |||||||| |||||| | ||| | ||||||||||||||||||| |||||
Sbjct: 194 gagcgctactacctcggggagcagttctacatcagcgtcatctcgccggagcactcgctg 135
Query: 617 agggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgcca 676
| |||||||||||||||||||| | ||||||| ||||||||||||| || |||||
Sbjct: 134 cgcgacgagtacaacatgccggacaacgacctccgccgcggcaaggtcgtggggctgccg 75
Query: 677 atgccgccgtcctac 691
||||||||||||||
Sbjct: 74 ctgccgccgtcctac 60
Score = 133 bits (67), Expect = 4e-029
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 289 ccccaacgtcatccgcgccgagttccgcaccttcatcgaggtggtcttcgagaaccccga 348
|||||| |||||| |||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 558 ccccaatgtcatcaccgccgagttcggcaccttcatcgagatggtcttggagaaccccga 499
Query: 349 gaagagcatcgacaccatccacatcgacggctacgccttcttcgccgtcgg 399
||||||| | ||| |||||||| ||||||||||||||||||||| ||||||
Sbjct: 498 gaagagcttggactccatccacctcgacggctacgccttcttcggcgtcgg 448
>gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 238 bits (120), Expect = 1e-060
Identities = 207/236 (87%)
Strand = Plus / Plus
Query: 456 cggtgagccggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgt 515
||||||||||||||||||||||||||||||| ||||| ||||||||| | ||| ||||||
Sbjct: 1 cggtgagccggcacacgatccaggtgtacccgaggtcatggacggcgattatgctgacgt 60
Query: 516 tcgacaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcg 575
||||||||||||||||||||||| |||||||||||||||||||| | | |||||||| |
Sbjct: 61 tcgacaacgcgggcatgtggagcgtccggtccaacatctgggagcgctactacctcgggg 120
Query: 576 agcagctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgc 635
||||| | ||| | ||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct: 121 agcagttctacatcagcgtcatctcgccggagcactcgctgcgcgacgagtacaacatgc 180
Query: 636 cggagactagcctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctac 691
|||| | ||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct: 181 cggacaacgacctccgctgcggcaaggtcgtggggctgccgctgccgccgtcctac 236
>gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 5', mRNA sequence
Length = 545
Score = 234 bits (118), Expect = 2e-059
Identities = 217/250 (86%)
Strand = Plus / Plus
Query: 289 ccccaacgtcatccgcgccgagttccgcaccttcatcgaggtggtcttcgagaaccccga 348
|||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 296 ccccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccga 355
Query: 349 gaagagcatcgacaccatccacatcgacggctacgccttcttcgccgtcggcatgggccc 408
||||||| | ||| |||||||| ||||||||||||||||||||| |||||| ||||| ||
Sbjct: 356 gaagagcttggactccatccacctcgacggctacgccttcttcggcgtcgggatggggcc 415
Query: 409 gggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacggtgagccggca 468
|| | ||| |||| | | | || ||||||||||| |||||| |||||||||||||
Sbjct: 416 tgggcagtggtcgccggaggcgagggtgacgtacaacctgctggacgcggtgagccggca 475
Query: 469 cacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcgacaacgcggg 528
|||||||||||||||||| ||||| ||||||||| | ||| |||||||| ||||||||||
Sbjct: 476 cacgatccaggtgtacccgaggtcatggacggcgattatgctgacgttctacaacgcggg 535
Query: 529 catgtggagc 538
||||||||||
Sbjct: 536 catgtggagc 545
Score = 133 bits (67), Expect = 4e-029
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 21 tccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacg 80
|||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct: 103 tccggtggaacctgacgtccagcgcggcgcggcccaacccgcagggctcctaccactacg 162
Query: 81 gccagatcaacatcacccgcaccatca 107
|||||||||||||||| ||||||||||
Sbjct: 163 gccagatcaacatcacacgcaccatca 189
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 185 acccccgtcaagctcgccgagtacttcaacg 215
|||||||| ||||||||||||||||||||||
Sbjct: 9 acccccgtgaagctcgccgagtacttcaacg 39
>gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 228 bits (115), Expect = 9e-058
Identities = 136/143 (95%)
Strand = Plus / Plus
Query: 566 tacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgag 625
||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct: 2 tacctcggcgagcagctgtacatcagcgtcacctcgccggagcggtcgctcagggacgag 61
Query: 626 tacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgccaatgccgccg 685
||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 62 tacaacatgccagagaccagcctccgctgcggcaaggtcgtcggcctgccactgccgccg 121
Query: 686 tcctacctctccgtctagagcat 708
|||||||||||||||||||||||
Sbjct: 122 tcctacctctccgtctagagcat 144
Score = 115 bits (58), Expect = 1e-023
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1002 atatgatgatatataatcctgtctatctaataagtccctcagccaaaaattgttctttat 1061
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 492 atatgatgatatataagcctgtctatataataagtccctcagccaaaaa-tgttctttat 550
Query: 1062 atttatgtatatgtacatgcat 1083
| ||||||||||||||||||||
Sbjct: 551 a-ttatgtatatgtacatgcat 571
Score = 52.0 bits (26), Expect = 1e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 975 cgtctcgaaccattgtaggag-ttaagtatatgatgat 1011
||||||||| ||||||||||| ||||||||||||||||
Sbjct: 452 cgtctcgaatcattgtaggagtttaagtatatgatgat 489
>gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 3', mRNA sequence
Length = 564
Score = 204 bits (103), Expect = 1e-050
Identities = 190/219 (86%)
Strand = Plus / Plus
Query: 473 atccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcgacaacgcgggcatg 532
|||||||||||||| ||||| ||||||||| | ||| |||||||||||||||||||||||
Sbjct: 1 atccaggtgtacccgaggtcatggacggcgattatgctgacgttcgacaacgcgggcatg 60
Query: 533 tggagcatccggtccaacatctgggagaggcagtacctcggcgagcagctgtacgtgagc 592
|||||| |||||||||||||||||||| | | |||||||| |||||| | ||| | |||
Sbjct: 61 tggagcgtccggtccaacatctgggagcgctactacctcggggagcagttctacatcagc 120
Query: 593 gtcatctcgccggagcggtcgctcagggacgagtacaacatgccggagactagcctccgc 652
|||||||||||||||| ||||| | |||||||||||||||||||| | |||||||
Sbjct: 121 gtcatctcgccggagcactcgctgcgcgacgagtacaacatgccggacaacgacctccgc 180
Query: 653 tgcggcaaggtcgtcggactgccaatgccgccgtcctac 691
|||||||||||||| || ||||| ||||||||||||||
Sbjct: 181 tgcggcaaggtcgtggggctgccgctgccgccgtcctac 219
>gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509838, DNA
sequence
Length = 625
Score = 165 bits (83), Expect = 1e-038
Identities = 208/247 (84%), Gaps = 2/247 (0%)
Strand = Plus / Minus
Query: 154 cttcaacggcgtgtcgcacgtggacccggaaacccccgtcaagctcgccgagtacttcaa 213
|||||| ||||| || ||| |||||| || |||||||| ||||||||||||||||||||
Sbjct: 263 cttcaatggcgtctcccacagggaccccgagacccccgtgaagctcgccgagtacttcaa 204
Query: 214 cgccagcgacggcgtgttcaagtacaacctcatcggggacgtgccgccctccaaca-cgg 272
|| || |||||| ||||||| ||||||| || || |||||||| ||| || | |||
Sbjct: 203 cgtcaccgacggggtgttcagctacaaccagatgggcgacgtgccccccgccgtgaacgg 144
Query: 273 cccccaccaagatggcccccaacgtcatccgcgccgagttccgcaccttcatcgaggtgg 332
|||| ||| | | | |||||| |||||| ||||||||||||||||||||||||| | |
Sbjct: 143 acccctccatg-tcgtccccaatgtcatcaccgccgagttccgcaccttcatcgagatcg 85
Query: 333 tcttcgagaaccccgagaagagcatcgacaccatccacatcgacggctacgccttcttcg 392
||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||
Sbjct: 84 tcttcgagaaccccgagaagagcttggactccatccacctcgacggctacgccttcttcg 25
Query: 393 ccgtcgg 399
||||||
Sbjct: 24 gcgtcgg 18
Score = 133 bits (67), Expect = 4e-029
Identities = 82/87 (94%)
Strand = Plus / Minus
Query: 21 tccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacg 80
|||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct: 396 tccggtggaacctgacgtccagcgcggcgcggcccaacccgcagggctcctaccactacg 337
Query: 81 gccagatcaacatcacccgcaccatca 107
|||||||||||||||| ||||||||||
Sbjct: 336 gccagatcaacatcacacgcaccatca 310
>gb|CW043993.1|CW043993 104_279_10508694_115_30247 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508694, DNA
sequence
Length = 555
Score = 153 bits (77), Expect = 4e-035
Identities = 106/112 (94%), Gaps = 4/112 (3%)
Strand = Plus / Minus
Query: 1002 atatgatgatatataatcctgtctatctaataagtccctcagccaaaaattgttctttat 1061
|||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 355 atatgatgatatataagcctgtctatctaataagtccctcagcc-aaaactgttctttat 297
Query: 1062 atttatgtatatgtacatgc--atgtctcctgattcaactttgatgtttatt 1111
| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 296 a-ttatgtatatgtacatgcatatgtctcctgattcaactttgatgtttatt 246
Score = 52.0 bits (26), Expect = 1e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 975 cgtctcgaaccattgtaggag-ttaagtatatgatgat 1011
||||||||| ||||||||||| ||||||||||||||||
Sbjct: 395 cgtctcgaatcattgtaggagtttaagtatatgatgat 358
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1155 ttggtatatggatcaatagattgt 1178
||||||||||||||||||||||||
Sbjct: 207 ttggtatatggatcaatagattgt 184
>gb|CF486496.1|CF486496 POL1_38_B08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B08_A002 3', mRNA sequence
Length = 437
Score = 145 bits (73), Expect = 1e-032
Identities = 102/108 (94%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 1002 atatgatgatatataatcctgtctatctaataagtccctcagccaaaaattgttctttat 1061
|||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 317 atatgatgatatataagcctgtctatctaataagtccctcagcc-aaaactgttctttat 375
Query: 1062 atttatgtatatgtacatgc--atgtctcctgattcaactttgatgtt 1107
| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 376 a-ttatgtatatgtacatgcatatgtctcctgattcaactttgatgtt 422
Score = 52.0 bits (26), Expect = 1e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 975 cgtctcgaaccattgtaggag-ttaagtatatgatgat 1011
||||||||| ||||||||||| ||||||||||||||||
Sbjct: 277 cgtctcgaatcattgtaggagtttaagtatatgatgat 314
>gb|CF484935.1|CF484935 POL1_28_A11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_28_A11_A002 5', mRNA sequence
Length = 565
Score = 133 bits (67), Expect = 4e-029
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 21 tccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacg 80
|||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct: 260 tccggtggaacctgacgtccagcgcggcgcggcccaacccgcagggctcctaccactacg 319
Query: 81 gccagatcaacatcacccgcaccatca 107
|||||||||||||||| ||||||||||
Sbjct: 320 gccagatcaacatcacacgcaccatca 346
Score = 75.8 bits (38), Expect = 8e-012
Identities = 142/174 (81%), Gaps = 2/174 (1%)
Strand = Plus / Plus
Query: 154 cttcaacggcgtgtcgcacgtggacccggaaacccccgtcaagctcgccgagtacttcaa 213
|||||| ||||| || ||| |||||| || |||||||| ||||||||||||||||||||
Sbjct: 393 cttcaatggcgtctcccacagggaccccgagacccccgtgaagctcgccgagtacttcaa 452
Query: 214 cgccagcgacggcgtgttcaagtacaacctcatcggggacgtgccgccctcc-aacacgg 272
|| || |||||| ||||||| ||||||| || || |||||||| ||| || ||||
Sbjct: 453 cgtcaccgacggggtgttcagctacaaccagatgggcgacgtgccccccgccgtgaacgg 512
Query: 273 cccccaccaagatggcccccaacgtcatccgcgccgagttccgcaccttcatcg 326
|||| ||| | | | |||||| |||||| |||||||||||||||||||||||
Sbjct: 513 acccctccatg-tcgtccccaatgtcatcaccgccgagttccgcaccttcatcg 565
>gb|CF481282.1|CF481282 POL1_71_C02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_C02_A002 3', mRNA sequence
Length = 322
Score = 121 bits (61), Expect = 2e-025
Identities = 102/112 (91%), Gaps = 4/112 (3%)
Strand = Plus / Plus
Query: 1002 atatgatgatatataatcctgtctatctaataagtccctcagccaaaaattgttctttat 1061
|||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct: 136 atatgatgatatataagcctgtctatttaataagtccctcagcc-aaaactgttctttat 194
Query: 1062 atttatgtatatgtacatgc--atgtctcctgattcaactttgatgtttatt 1111
| ||| ||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct: 195 a-ttaggtataggtacaggcatatgtctcctgattcaactttgatgtttatt 245
Score = 52.0 bits (26), Expect = 1e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 975 cgtctcgaaccattgtaggag-ttaagtatatgatgat 1011
||||||||| ||||||||||| ||||||||||||||||
Sbjct: 96 cgtctcgaatcattgtaggagtttaagtatatgatgat 133
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1155 ttggtatatggatcaatagattgt 1178
||||||||||||||||||||||||
Sbjct: 284 ttggtatatggatcaatagattgt 307
>gb|CF484277.1|CF484277 POL1_4_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_F09_A002 3', mRNA sequence
Length = 572
Score = 119 bits (60), Expect = 6e-025
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 637 ggagactagcctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctctc 696
|||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 73 ggagaccagcctccgctgcggcaaggtcgtcggcctgccactgccgccgtcctacctctc 132
Query: 697 cgtctagagcat 708
||||||||||||
Sbjct: 133 cgtctagagcat 144
Score = 115 bits (58), Expect = 1e-023
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1002 atatgatgatatataatcctgtctatctaataagtccctcagccaaaaattgttctttat 1061
|||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 492 atatgatgatatataagcctgtctatctaataagtccctcagcc-aaaactgttctttat 550
Query: 1062 atttatgtatatgtacatgcat 1083
| ||||||||||||||||||||
Sbjct: 551 a-ttatgtatatgtacatgcat 571
Score = 52.0 bits (26), Expect = 1e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 975 cgtctcgaaccattgtaggag-ttaagtatatgatgat 1011
||||||||| ||||||||||| ||||||||||||||||
Sbjct: 452 cgtctcgaatcattgtaggagtttaagtatatgatgat 489
>gb|CW362554.1|CW362554 fsbb001f033k13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f033k13, DNA
sequence
Length = 691
Score = 95.6 bits (48), Expect = 9e-018
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 15 ggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtacc 74
|||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||| ||
Sbjct: 528 ggtccttccggtggaacctcacggccagcgcggcgcgccccaacccgcagggctcgttcc 587
Query: 75 actacggc 82
||||||||
Sbjct: 588 actacggc 595
>gb|CW362555.1|CW362555 fsbb001f033k13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f033k13, DNA
sequence
Length = 568
Score = 95.6 bits (48), Expect = 9e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 15 ggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtacc 74
|||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||| ||
Sbjct: 415 ggtccttccggtggaacctcacggccagcgcggcgcgccccaacccgcagggctcgttcc 356
Query: 75 actacggc 82
||||||||
Sbjct: 355 actacggc 348
>gb|CW358545.1|CW358545 fsbb001f025l20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f025l20, DNA
sequence
Length = 616
Score = 83.8 bits (42), Expect = 3e-014
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggcc 83
|||||||||||||| |||| | || |||||||||||||||||||||||||||||||||
Sbjct: 378 tggaacctgacggcgagcgggccgaggcccaacccgcaggggtcgtaccactacggcc 435
>gb|CW029106.1|CW029106 104_256_10499487_116_30400 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499487, DNA
sequence
Length = 715
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 29 aacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggc 82
||||||||||| |||| | || |||| ||||||||||| |||||||||||||||
Sbjct: 264 aacctgacggcgagcgggccgaggccgaacccgcagggctcgtaccactacggc 211
>gb|CW371734.1|CW371734 fsbb001f047f12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047f12, DNA
sequence
Length = 618
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 29 aacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggc 82
||||||||||| |||| | || |||| ||||||||||| |||||||||||||||
Sbjct: 68 aacctgacggcgagcgggccgaggccgaacccgcagggctcgtaccactacggc 121
>gb|CW473221.1|CW473221 fsbb001f228i05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228i05, DNA
sequence
Length = 691
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 29 aacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggc 82
||||||||||| |||| | || |||| ||||||||||| |||||||||||||||
Sbjct: 574 aacctgacggcgagcgggccgaggccgaacccgcagggctcgtaccactacggc 627
>gb|CF485646.1|CF485646 POL1_32_F06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_32_F06_A002 5', mRNA sequence
Length = 630
Score = 60.0 bits (30), Expect = 5e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 29 aacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggc 82
||||||||||| |||| | || |||| ||||||||||| |||||||||||||||
Sbjct: 447 aacctgacggcgagcgggccgaggccgaacccgcagggctcgtaccactacggc 500
>gb|CW478499.1|CW478499 fsbb001f236g18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236g18, DNA
sequence
Length = 374
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 678 tgccgccgtcctacctctccgtctagagcat 708
|||||||||||| ||||||||||||||||||
Sbjct: 371 tgccgccgtcctccctctccgtctagagcat 341
Score = 40.1 bits (20), Expect = 0.46
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 975 cgtctcgaaccattgtaggag-ttaagtatat 1005
||||||||| ||||||||||| ||||||||||
Sbjct: 32 cgtctcgaatcattgtaggagtttaagtatat 1
>gb|CW297869.1|CW297869 104_780_11462273_116_35646_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462273, DNA
sequence
Length = 604
Score = 52.0 bits (26), Expect = 1e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgt 71
|||||| |||| |||||||||| ||| |||| ||||| |||||||||||||| ||||
Sbjct: 565 aggtccgtccggtggaacctgagcgccggcgccgcgcgccccaacccgcagggctcgt 508
>gb|CW297870.1|CW297870 104_780_11462273_148_35650_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462273, DNA
sequence
Length = 551
Score = 52.0 bits (26), Expect = 1e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgt 71
|||||| |||| |||||||||| ||| |||| ||||| |||||||||||||| ||||
Sbjct: 428 aggtccgtccggtggaacctgagcgccggcgccgcgcgccccaacccgcagggctcgt 485
>gb|CW298476.1|CW298476 104_781_11462600_116_35659_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462600, DNA
sequence
Length = 683
Score = 52.0 bits (26), Expect = 1e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgt 71
|||||| |||| |||||||||| ||| |||| ||||| |||||||||||||| ||||
Sbjct: 484 aggtccgtccggtggaacctgagcgccggcgccgcgcgccccaacccgcagggctcgt 541
>gb|CW298477.1|CW298477 104_781_11462600_148_35655_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462600, DNA
sequence
Length = 697
Score = 52.0 bits (26), Expect = 1e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgt 71
|||||| |||| |||||||||| ||| |||| ||||| |||||||||||||| ||||
Sbjct: 373 aggtccgtccggtggaacctgagcgccggcgccgcgcgccccaacccgcagggctcgt 316
>gb|CL189048.1|CL189048 104_406_10902017_116_32471_079 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902017, DNA
sequence
Length = 535
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 586 cgtgagcgtcatctcgccggagcgg 610
|||| ||||||||||||||||||||
Sbjct: 169 cgtgcgcgtcatctcgccggagcgg 145
>gb|CL190769.1|CL190769 104_409_10906310_114_32491_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906310, DNA
sequence
Length = 633
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 586 cgtgagcgtcatctcgccggagcgg 610
|||| ||||||||||||||||||||
Sbjct: 627 cgtgcgcgtcatctcgccggagcgg 603
>gb|CL190770.1|CL190770 104_409_10906310_116_32499_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906310, DNA
sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 586 cgtgagcgtcatctcgccggagcgg 610
|||| ||||||||||||||||||||
Sbjct: 510 cgtgcgcgtcatctcgccggagcgg 534
>gb|CW472012.1|CW472012 fsbb001f226i03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f226i03, DNA
sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 586 cgtgagcgtcatctcgccggagcgg 610
|||| ||||||||||||||||||||
Sbjct: 643 cgtgcgcgtcatctcgccggagcgg 619
>gb|CW477133.1|CW477133 fsbb001f234f06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f234f06, DNA
sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 586 cgtgagcgtcatctcgccggagcgg 610
|||| ||||||||||||||||||||
Sbjct: 517 cgtgcgcgtcatctcgccggagcgg 541
>gb|CD208762.1|CD208762 HS1_44_C05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_44_C05_A012 3', mRNA sequence
Length = 481
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 586 cgtgagcgtcatctcgccggagcgg 610
|||| ||||||||||||||||||||
Sbjct: 10 cgtgcgcgtcatctcgccggagcgg 34
>gb|CD425186.1|CD425186 SA1_11_E10.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_11_E10_A002 3', mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 586 cgtgagcgtcatctcgccggagcgg 610
|||| ||||||||||||||||||||
Sbjct: 8 cgtgcgcgtcatctcgccggagcgg 32
>gb|CD427044.1|CD427044 SA1_17_G03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_17_G03_A002 3', mRNA sequence
Length = 620
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 586 cgtgagcgtcatctcgccggagcgg 610
|||| ||||||||||||||||||||
Sbjct: 8 cgtgcgcgtcatctcgccggagcgg 32
>gb|CW153312.1|CW153312 104_555_11144980_148_36341_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144980, DNA
sequence
Length = 676
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1069 tatatgtacatgcatgtctc 1088
||||||||||||||||||||
Sbjct: 260 tatatgtacatgcatgtctc 241
>gb|BG817477.1|BG817477 EM1_76_D10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 585
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 240 acctcatcggggacgtgccg 259
||||||||||||||||||||
Sbjct: 540 acctcatcggggacgtgccg 559
>gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_G11_A002 3', mRNA sequence
Length = 725
Score = 40.1 bits (20), Expect = 0.46
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 551 atctgggagaggcagtacctcggcgagcagct 582
|||||||| |||||||||||||| |||||||
Sbjct: 291 atctgggaccggcagtacctcggccagcagct 322
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 322,894
Number of Sequences: 832831
Number of extensions: 322894
Number of successful extensions: 89878
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89717
Number of HSP's gapped (non-prelim): 130
length of query: 1195
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1175
effective length of database: 474,703,049
effective search space: 557776082575
effective search space used: 557776082575
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)