BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276642.2.1
(1062 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG412419.1|BG412419 OV2_33_H06.g1_A002 Ovary 2 (OV2) Sor... 993 0.0
gb|CX607178.1|CX607178 ANR1_7_D05.b1_A002 Anaerobic roots S... 876 0.0
gb|CX607686.1|CX607686 ANR1_30_D09.b1_A002 Anaerobic roots ... 833 0.0
gb|BF585833.1|BF585833 FM1_25_A11.g1_A003 Floral-Induced Me... 674 0.0
gb|CD227408.1|CD227408 CCC1_51_A03.b1_A007 Callus culture/c... 624 e-177
gb|BG605936.1|BG605936 RHIZ2_83_D10.g1_A003 Rhizome2 (RHIZ2... 601 e-170
gb|CN143257.1|CN143257 WOUND1_15_C09.b1_A002 Wounded leaves... 551 e-155
gb|BG412611.1|BG412611 OV2_36_F03.g1_A002 Ovary 2 (OV2) Sor... 545 e-153
gb|CF074411.1|CF074411 FE1_24_E06.b1_A002 Iron-deficient se... 543 e-152
gb|BG051594.1|BG051594 FM1_58_E05.g1_A003 Floral-Induced Me... 507 e-142
gb|CD224275.1|CD224275 CCC1_33_G10.b1_A007 Callus culture/c... 498 e-139
gb|BG605961.1|BG605961 RHIZ2_83_G03.g1_A003 Rhizome2 (RHIZ2... 492 e-137
gb|BF480983.1|BF480983 FM1_15_H07.g1_A003 Floral-Induced Me... 482 e-134
gb|CW387950.1|CW387950 fsbb001f072i05k0 Sorghum methylation... 369 e-100
gb|CN143330.1|CN143330 WOUND1_15_C09.g1_A002 Wounded leaves... 327 1e-087
gb|BG558029.1|BG558029 RHIZ2_65_F12.g1_A003 Rhizome2 (RHIZ2... 315 5e-084
gb|BG605884.1|BG605884 RHIZ2_82_G03.g1_A003 Rhizome2 (RHIZ2... 307 1e-081
gb|CW238780.1|CW238780 104_695_11216917_148_37525_051 Sorgh... 236 3e-060
gb|BG649800.1|BG649800 RHIZ2_83_G03.b1_A003 Rhizome2 (RHIZ2... 113 3e-023
gb|BG559569.1|BG559569 RHIZ2_69_B05.g1_A003 Rhizome2 (RHIZ2... 50 4e-004
gb|CL162363.1|CL162363 104_354_10806355_114_31830_259 Sorgh... 42 0.10
>gb|BG412419.1|BG412419 OV2_33_H06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 993 bits (501), Expect = 0.0
Identities = 616/651 (94%), Gaps = 10/651 (1%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 645 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 586
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 585 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 529
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 528 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 472
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 471 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 412
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 352
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagataccacgtgtc 689
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 351 atagcctccattcggatccaccaccctgatagaagtctcctgacccagataccatgtgtc 292
Query: 690 caggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcacagcagt 749
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 291 caggttttctgtccgtacattccaaaaccctgggctgtcaagtgacagcatcacagcggt 232
Query: 750 ccatgctcccggaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaagt 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ccatgctcccggaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaagt 172
Query: 810 cccacggctattctcagtccactcaccatagtccattcctacaacccagaatgcatatcc 869
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 171 cccacggatattctcagtccactcaccatagtccatccctacaacccagaatgcatatcc 112
Query: 870 atcaatgtggtaggtctggacagttgagtcattgttctgaaatacaatttccaaaaagtt 929
||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 111 atcgatatggtaggtctggacagttgtgtcattgttctgaaatacaatttccaaaaagtt 52
Query: 930 cttgtatgtggagttaatgacagatgttctgatcactggcggtccatcaat 980
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 51 cttgtatgtggagttaatgacagatgttctgatcactggtggtccatcaat 1
>gb|CX607178.1|CX607178 ANR1_7_D05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_7_D05_A002 3', mRNA sequence
Length = 794
Score = 876 bits (442), Expect = 0.0
Identities = 545/576 (94%), Gaps = 10/576 (1%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 570 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 511
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 510 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 454
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 453 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 397
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 396 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 337
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 277
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagataccacgtgtc 689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 276 atagcctccattcggatccaccaccctgatgtaagtctcctgacccagataccatgtgtc 217
Query: 690 caggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcacagcagt 749
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 216 caggttttctgtccgtacattccaaaaccctgggctgtcaagtgacagcatcacagcggt 157
Query: 750 ccatgctcccggaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaagt 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ccatgctcccggaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaagt 97
Query: 810 cccacggctattctcagtccactcaccatagtccattcctacaacccagaatgcatatcc 869
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 96 cccacggctattctcagtccactcaccatagtccatccctacaacccagaatgcatatcc 37
Query: 870 atcaatgtggtaggtctggacagttgagtcattgtt 905
||| || ||||||||||||||||||| |||||||||
Sbjct: 36 atcgatatggtaggtctggacagttgtgtcattgtt 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| |||| |||
Sbjct: 636 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaacggc 577
Query: 318 a 318
|
Sbjct: 576 a 576
Score = 40.1 bits (20), Expect = 0.41
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 151 caactctcgacaaattcactgatcaag-aaaacacactca 189
|||||||| ||| ||| |||||||||| ||||||||||||
Sbjct: 756 caactctccacagattgactgatcaagaaaaacacactca 717
>gb|CX607686.1|CX607686 ANR1_30_D09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_30_D09_A002 3', mRNA sequence
Length = 767
Score = 833 bits (420), Expect = 0.0
Identities = 514/542 (94%), Gaps = 10/542 (1%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 536 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 477
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 476 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 420
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 419 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 363
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 362 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 303
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 243
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagataccacgtgtc 689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 242 atagcctccattcggatccaccaccctgatgtaagtctcctgacccagataccatgtgtc 183
Query: 690 caggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcacagcagt 749
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 182 caggttttctgtccgtacattccaaaaccctgggctgtcaagtgacagcatcacagcggt 123
Query: 750 ccatgctcccggaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaagt 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ccatgctcccggaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaagt 63
Query: 810 cccacggctattctcagtccactcaccatagtccattcctacaacccagaatgcatatcc 869
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 62 cccacggctattctcagtccactcaccatagtccatccctacaacccagaatgcatatcc 3
Query: 870 at 871
||
Sbjct: 2 at 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| |||| |||
Sbjct: 602 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaacggc 543
Query: 318 a 318
|
Sbjct: 542 a 542
Score = 40.1 bits (20), Expect = 0.41
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 151 caactctcgacaaattcactgatcaag-aaaacacactca 189
|||||||| ||| ||| |||||||||| ||||||||||||
Sbjct: 722 caactctccacagattgactgatcaagaaaaacacactca 683
>gb|BF585833.1|BF585833 FM1_25_A11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 620
Score = 674 bits (340), Expect = 0.0
Identities = 425/450 (94%), Gaps = 10/450 (2%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaac--ctacgaattcgactgacctactcaacagt 391
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 tcaatcgccagacaaatcatgaatggaactcctacgaattcgactgacctactcaacagt 385
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| ||||||||| |||
Sbjct: 384 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaagctgg---cag 328
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 327 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 271
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 270 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 211
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 151
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagataccacgtgtc 689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 150 atagcctccattcggatccaccaccctgatgtaagtctcctgacccagataccatgtgtc 91
Query: 690 caggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcacagcagt 749
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 90 caggttttctgtccgtacattccaaaaccctgggctgtcaagtgacagcatcacagcggt 31
Query: 750 ccatgctcccggaaacacctgagtcgtgca 779
||||||||||||||||||||||||||||||
Sbjct: 30 ccatgctcccggaaacacctgagtcgtgca 1
Score = 75.8 bits (38), Expect = 7e-012
Identities = 113/134 (84%), Gaps = 8/134 (5%)
Strand = Plus / Minus
Query: 186 ctcaggcagcacagcacacgccttgctt-gtgggtgccagctgccgacaacttcaaattt 244
||||||||||||||||| | ||||||| | |||||||||||||||||| | |||||| |
Sbjct: 576 ctcaggcagcacagcactc--cttgctttgcgggtgccagctgccgacagcctcaaatat 519
Query: 245 gtgctcaatctcaagctactgcacagttcttcagcatgttaatcaattccgatggacgaa 304
| || | || ||||||||||||||||||||||||| |||||| ||| ||| ||| ||
Sbjct: 518 g--ctga---tcgagctactgcacagttcttcagcatgctaatcagttctgatcgacaaa 464
Query: 305 gatgcgcaatggca 318
|||| |||||||||
Sbjct: 463 gatgtgcaatggca 450
>gb|CD227408.1|CD227408 CCC1_51_A03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_51_A03_A007 3', mRNA sequence
Length = 670
Score = 624 bits (315), Expect = e-177
Identities = 412/441 (93%), Gaps = 10/441 (2%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 435 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 376
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||| ||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 375 atttctgtcgaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 319
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 318 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 262
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 202
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 142
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagataccacgtgtc 689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 141 atagcctccattcggatccaccaccctgatgtaagtctcctgacccagataccatgtgtc 82
Query: 690 caggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcacagcagt 749
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||
Sbjct: 81 caggttttctgtccgtacattccaaaaccctgggctgtcaagtggcagcatcacagcggt 22
Query: 750 ccatgctcccggaaacacctg 770
|||||||||||||||||||||
Sbjct: 21 ccatgctcccggaaacacctg 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| |||| |||
Sbjct: 501 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaacggc 442
Query: 318 a 318
|
Sbjct: 441 a 441
Score = 40.1 bits (20), Expect = 0.41
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 151 caactctcgacaaattcactgatcaag-aaaacacactca 189
|||||||| ||| ||| |||||||||| ||||||||||||
Sbjct: 621 caactctccacagattgactgatcaagaaaaacacactca 582
>gb|BG605936.1|BG605936 RHIZ2_83_D10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 641
Score = 601 bits (303), Expect = e-170
Identities = 396/424 (93%), Gaps = 10/424 (2%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 418 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 359
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 358 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 302
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 301 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 245
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 244 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 185
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 125
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagataccacgtgtc 689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 124 atagcctccattcggatccaccaccctgatgtaagtctcctgacccagataccatgtgtc 65
Query: 690 caggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcacagcagt 749
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 64 caggttttctgtccgtacattccanaaccctgggctgtcaagtgacagcatcacagcggt 5
Query: 750 ccat 753
||||
Sbjct: 4 ccat 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| |||| |||
Sbjct: 484 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaacggc 425
Query: 318 a 318
|
Sbjct: 424 a 424
Score = 40.1 bits (20), Expect = 0.41
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 151 caactctcgacaaattcactgatcaag-aaaacacactca 189
|||||||| ||| ||| |||||||||| ||||||||||||
Sbjct: 604 caactctccacagattgactgatcaagaaaaacacactca 565
>gb|CN143257.1|CN143257 WOUND1_15_C09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_15_C09_A002 3', mRNA sequence
Length = 593
Score = 551 bits (278), Expect = e-155
Identities = 375/404 (92%), Gaps = 10/404 (2%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||| ||
Sbjct: 398 tcaatcgccagacaaatcatgaatggaacccctacgaattcgaccgacttactcaacggt 339
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 338 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 282
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 281 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 225
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 224 gtagttcagttttgctgcagaggctgttgaccttgaaccatgaggcttctgagccttctg 165
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 105
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagataccacgtgtc 689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 104 atagcctccattcggatccaccaccctgatgtaagtctcctgacccagataccatgtgtc 45
Query: 690 caggttttctgtccgtacattccaaaatcctgggctgtcaagtg 733
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 44 caggttttctgtccgtacattccaaaaccctgggctgtcaagtg 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| |||| |||
Sbjct: 464 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaacggc 405
Query: 318 a 318
|
Sbjct: 404 a 404
Score = 40.1 bits (20), Expect = 0.41
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 151 caactctcgacaaattcactgatcaag-aaaacacactca 189
|||||||| ||| ||| |||||||||| ||||||||||||
Sbjct: 584 caactctccacagattgactgatcaagaaaaacacactca 545
>gb|BG412611.1|BG412611 OV2_36_F03.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 543
Score = 545 bits (275), Expect = e-153
Identities = 360/385 (93%), Gaps = 10/385 (2%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 379 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 320
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 319 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 263
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 262 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 206
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 146
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 86
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagataccacgtgtc 689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 85 atagcctccattcggatccaccaccctgatgtaagtctcctgacccagataccatgtgtc 26
Query: 690 caggttttctgtccgtacattccaa 714
|||||||||||||||||||||||||
Sbjct: 25 caggttttctgtccgtacattccaa 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| |||| |||
Sbjct: 445 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaacggc 386
Query: 318 a 318
|
Sbjct: 385 a 385
>gb|CF074411.1|CF074411 FE1_24_E06.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_24_E06_A002 3', mRNA sequence
Length = 640
Score = 543 bits (274), Expect = e-152
Identities = 359/384 (93%), Gaps = 10/384 (2%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 431 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 372
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 371 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 315
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 314 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 258
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 257 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 198
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 138
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagataccacgtgtc 689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 137 atagcctccattcggatccaccaccctgatgtaagtctcctgacccagataccatgtgtc 78
Query: 690 caggttttctgtccgtacattcca 713
||||||||||||||||||||||||
Sbjct: 77 caggttttctgtccgtacattcca 54
Score = 103 bits (52), Expect = 3e-020
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 795 ccacttgttgtaagtcccacggctattctcagtccactcaccatagtccattccta 850
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 56 ccacttgttgtaagtcccacggctattctcagtccactcaccatagtccatcccta 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| |||| |||
Sbjct: 497 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaacggc 438
Query: 318 a 318
|
Sbjct: 437 a 437
Score = 40.1 bits (20), Expect = 0.41
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 151 caactctcgacaaattcactgatcaag-aaaacacactca 189
|||||||| ||| ||| |||||||||| ||||||||||||
Sbjct: 617 caactctccacagattgactgatcaagaaaaacacactca 578
>gb|BG051594.1|BG051594 FM1_58_E05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 536
Score = 507 bits (256), Expect = e-142
Identities = 332/354 (93%), Gaps = 10/354 (2%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaac--ctacgaattcgactgacctactcaacagt 391
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 348 tcaatcgccagacaaatcatgaatggaactcctacgaattcgactgacctactcaacagt 289
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| ||||||||| |||
Sbjct: 288 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaagctgg---cag 232
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 231 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 175
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 174 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 115
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 55
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagatacca 683
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 atagcctccattcggatccaccaccctgatgtaagtctcctgacccagatacca 1
Score = 75.8 bits (38), Expect = 7e-012
Identities = 113/134 (84%), Gaps = 8/134 (5%)
Strand = Plus / Minus
Query: 186 ctcaggcagcacagcacacgccttgctt-gtgggtgccagctgccgacaacttcaaattt 244
||||||||||||||||| | ||||||| | |||||||||||||||||| | |||||| |
Sbjct: 480 ctcaggcagcacagcactc--cttgctttgcgggtgccagctgccgacagcctcaaatat 423
Query: 245 gtgctcaatctcaagctactgcacagttcttcagcatgttaatcaattccgatggacgaa 304
| || | || ||||||||||||||||||||||||| |||||| ||| ||| ||| ||
Sbjct: 422 g--ctga---tcgagctactgcacagttcttcagcatgctaatcagttctgatcgacaaa 368
Query: 305 gatgcgcaatggca 318
|||| |||||||||
Sbjct: 367 gatgtgcaatggca 354
>gb|CD224275.1|CD224275 CCC1_33_G10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_33_G10_A007 3', mRNA sequence
Length = 613
Score = 498 bits (251), Expect = e-139
Identities = 336/361 (93%), Gaps = 10/361 (2%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 355 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 296
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 295 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 239
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 238 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 182
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 181 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 122
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 62
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagataccacgtgtc 689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 atagcctccattcggatccaccaccctgatgtaagtctcctgacccagataccatgtgtc 2
Query: 690 c 690
|
Sbjct: 1 c 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| |||| |||
Sbjct: 421 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaacggc 362
Query: 318 a 318
|
Sbjct: 361 a 361
Score = 40.1 bits (20), Expect = 0.41
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 151 caactctcgacaaattcactgatcaag-aaaacacactca 189
|||||||| ||| ||| |||||||||| ||||||||||||
Sbjct: 541 caactctccacagattgactgatcaagaaaaacacactca 502
>gb|BG605961.1|BG605961 RHIZ2_83_G03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 631
Score = 492 bits (248), Expect = e-137
Identities = 330/354 (93%), Gaps = 10/354 (2%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 348 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 289
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 288 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 232
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 231 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 175
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 174 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 115
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 55
Query: 630 atagcctccatttggatccaccaccctgatgtaagtctcctgacccagatacca 683
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 atagcctccattcggatccaccaccctgatgtaagtctcctgacccagatacca 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| |||| |||
Sbjct: 414 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaacggc 355
Query: 318 a 318
|
Sbjct: 354 a 354
Score = 40.1 bits (20), Expect = 0.41
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 151 caactctcgacaaattcactgatcaag-aaaacacactca 189
|||||||| ||| ||| |||||||||| ||||||||||||
Sbjct: 534 caactctccacagattgactgatcaagaaaaacacactca 495
>gb|BF480983.1|BF480983 FM1_15_H07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 469
Score = 482 bits (243), Expect = e-134
Identities = 326/349 (93%), Gaps = 11/349 (3%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaac--ctacgaattcgactgacctactcaacagt 391
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 343 tcaatcgccagacaaatcatgaatggaactcctacgaattcgactgacctactcaacagt 284
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| ||||||||| |||
Sbjct: 283 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaagctgg---cag 227
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 226 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 170
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 169 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 110
Query: 570 tttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 629
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagtaacatt 50
Query: 630 atag-cctccatttggatccaccaccctgatgtaagtctcctgacccag 677
|||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 49 atagccctccattcggatccaccaccctgatgtaagtctcctgacccag 1
Score = 73.8 bits (37), Expect = 3e-011
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| ||||||||
Sbjct: 409 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaatggc 350
Query: 318 a 318
|
Sbjct: 349 a 349
>gb|CW387950.1|CW387950 fsbb001f072i05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072i05, DNA
sequence
Length = 624
Score = 369 bits (186), Expect = e-100
Identities = 201/206 (97%)
Strand = Plus / Minus
Query: 564 cttctgtttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagt 623
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctgtttgtccttgaggaggccacagtagagcatgttgtctggagccaccatctcagt 202
Query: 624 aacattatagcctccatttggatccaccaccctgatgtaagtctcctgacccagatacca 683
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacattatagcctccattcggatccaccaccctgatgtaagtctcctgacccagatacca 142
Query: 684 cgtgtccaggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcac 743
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 141 tgtgtccaggttttctgtccgtacattccaaaaccctgggctgtcaagtgacagcatcac 82
Query: 744 agcagtccatgctcccggaaacacct 769
||| ||||||||||||||||||||||
Sbjct: 81 agcggtccatgctcccggaaacacct 56
Score = 272 bits (137), Expect = 6e-071
Identities = 213/235 (90%), Gaps = 10/235 (4%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 607 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 548
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 547 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 491
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 490 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 434
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagcc 564
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 433 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagcc 379
>gb|CN143330.1|CN143330 WOUND1_15_C09.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_15_C09_A002 5', mRNA sequence
Length = 749
Score = 327 bits (165), Expect = 1e-087
Identities = 195/205 (95%)
Strand = Plus / Minus
Query: 858 gaatgcatatccatcaatgtggtaggtctggacagttgagtcattgttctgaaatacaat 917
||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 749 gaatgcatatccatcgatatggtaggtctggacagttgtgtcattgttctgaaatacaat 690
Query: 918 ttccaaaaagttcttgtatgtggagttaatgacagatgttctgatcactggcggtccatc 977
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 689 ttccaaaaagttcttgtatgtggagttaatgacagatgttctgatcactggtggtccatc 630
Query: 978 aattggcattgtagggaagtcaagtgtgtagacatccttcttgtcgtacagatctgccaa 1037
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 629 aattggcattgtagggaagtcgagtgtgtagacatccttcttgtcatagagatctgccaa 570
Query: 1038 ccttagaggagtgtcgggtggggaa 1062
||| |||||||| ||||| ||||||
Sbjct: 569 cctcagaggagtatcgggaggggaa 545
>gb|BG558029.1|BG558029 RHIZ2_65_F12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 495
Score = 315 bits (159), Expect = 5e-084
Identities = 232/253 (91%), Gaps = 10/253 (3%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaac--ctacgaattcgactgacctactcaacagt 391
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 247 tcaatcgccagacaaatcatgaatggaactcctacgaattcgactgacctactcaacagt 188
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| ||||||||| |||
Sbjct: 187 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaagctgg---cag 131
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 130 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 74
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 73 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 14
Query: 570 tttatccttgagg 582
||| |||||||||
Sbjct: 13 tttgtccttgagg 1
Score = 75.8 bits (38), Expect = 7e-012
Identities = 113/134 (84%), Gaps = 8/134 (5%)
Strand = Plus / Minus
Query: 186 ctcaggcagcacagcacacgccttgctt-gtgggtgccagctgccgacaacttcaaattt 244
||||||||||||||||| | ||||||| | |||||||||||||||||| | |||||| |
Sbjct: 379 ctcaggcagcacagcactc--cttgctttgcgggtgccagctgccgacagcctcaaatat 322
Query: 245 gtgctcaatctcaagctactgcacagttcttcagcatgttaatcaattccgatggacgaa 304
| || | || ||||||||||||||||||||||||| |||||| ||| ||| ||| ||
Sbjct: 321 g--ctga---tcgagctactgcacagttcttcagcatgctaatcagttctgatcgacaaa 267
Query: 305 gatgcgcaatggca 318
|||| |||||||||
Sbjct: 266 gatgtgcaatggca 253
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 151 caactctcgacaaattcactgatcaagaaaacacactca 189
|||||||| ||||||| ||||||||| ||||||||||||
Sbjct: 433 caactctccacaaattgactgatcaaaaaaacacactca 395
>gb|BG605884.1|BG605884 RHIZ2_82_G03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 537
Score = 307 bits (155), Expect = 1e-081
Identities = 234/257 (91%), Gaps = 10/257 (3%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 251 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 192
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctgacc--acaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||||| |||| |||| |||
Sbjct: 191 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaactgg---cag 135
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 134 ttcttgtcaaaggcccaacgccaaggctacca---aagagaccaaaaacgcgagcacatg 78
Query: 510 atagttcagttttgctgcagaggctgatgacctcgaaccatgaggcttctgagccttctg 569
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 77 gtagttcagttttgctgcagaggctgatgaccttgaaccatgaggcttctgagccttctg 18
Query: 570 tttatccttgaggaggc 586
||| |||||||||||||
Sbjct: 17 tttgtccttgaggaggc 1
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| |||| |||
Sbjct: 317 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaacggc 258
Query: 318 a 318
|
Sbjct: 257 a 257
Score = 40.1 bits (20), Expect = 0.41
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 151 caactctcgacaaattcactgatcaag-aaaacacactca 189
|||||||| ||| ||| |||||||||| ||||||||||||
Sbjct: 437 caactctccacagattgactgatcaagaaaaacacactca 398
>gb|CW238780.1|CW238780 104_695_11216917_148_37525_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216917, DNA
sequence
Length = 681
Score = 236 bits (119), Expect = 3e-060
Identities = 192/213 (90%), Gaps = 10/213 (4%)
Strand = Plus / Minus
Query: 334 tcaattgccagacaaatcatgaatggaacc--tacgaattcgactgacctactcaacagt 391
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 210 tcaatcgccagacaaatcatgaatggaacccctacgaattcgactgacttactcaacagt 151
Query: 392 atttctgtcaaacgcataatcaacctgcaaacagcagctga--ccacaagctggaggcag 449
||||||||||||||| |||| || ||||||||||||||||| |||||| || |||||
Sbjct: 150 atttctgtcaaacgcctaattaatctgcaaacagcagctgaccccacaaact---ggcag 94
Query: 450 ttcttgtcaatggcccaacaccaaggctaccaccaaagagaccaaagccgcgagcacatg 509
|||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct: 93 ttcttgtcaaaggcccaacgccaaggct---accaaagagaccaaaaacgcgagcacatg 37
Query: 510 atagttcagttttgctgcagaggctgatgacct 542
||||||||||||||||||||||||||||||||
Sbjct: 36 gtagttcagttttgctgcagaggctgatgacct 4
Score = 65.9 bits (33), Expect = 7e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatgttaatcaattccgatggacgaagatgcgcaatggc 317
||||||||||||||||||||||||| |||||| ||| ||| ||| |||||| |||| |||
Sbjct: 276 agctactgcacagttcttcagcatgctaatcagttctgatcgacaaagatgtgcaacggc 217
Query: 318 a 318
|
Sbjct: 216 a 216
Score = 40.1 bits (20), Expect = 0.41
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 151 caactctcgacaaattcactgatcaag-aaaacacactca 189
|||||||| ||| ||| |||||||||| ||||||||||||
Sbjct: 396 caactctccacagattgactgatcaagaaaaacacactca 357
>gb|BG649800.1|BG649800 RHIZ2_83_G03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 586
Score = 113 bits (57), Expect = 3e-023
Identities = 75/81 (92%)
Strand = Plus / Minus
Query: 982 ggcattgtagggaagtcaagtgtgtagacatccttcttgtcgtacagatctgccaacctt 1041
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 583 ggcattgtagggaagtcgagtgtgtagacatccttcttgtcatagagatctgccaacctc 524
Query: 1042 agaggagtgtcgggtggggaa 1062
|||||||| ||||| ||||||
Sbjct: 523 agaggagtatcgggaggggaa 503
>gb|BG559569.1|BG559569 RHIZ2_69_B05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 181
Score = 50.1 bits (25), Expect = 4e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 258 agctactgcacagttcttcagcatg 282
|||||||||||||||||||||||||
Sbjct: 56 agctactgcacagttcttcagcatg 32
>gb|CL162363.1|CL162363 104_354_10806355_114_31830_259 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806355, DNA
sequence
Length = 746
Score = 42.1 bits (21), Expect = 0.10
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 766 acctgagtcgtgcaacgagaaacaccatcccacttgttgta 806
|||||||| ||||||||||| | ||||||||||||||||
Sbjct: 211 acctgagtggtgcaacgagagatggcatcccacttgttgta 251
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 235,397
Number of Sequences: 832831
Number of extensions: 235397
Number of successful extensions: 63689
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63533
Number of HSP's gapped (non-prelim): 79
length of query: 1062
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1042
effective length of database: 474,703,049
effective search space: 494640577058
effective search space used: 494640577058
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)