BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P15F020924.3.1
(625 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN492320.1|DN492320 X003G07.3pR Populus wood cDNA librar... 38 0.39
gb|DT493290.1|DT493290 WS02553.C21_P02 PT-MB-N-A-15 Populus... 38 0.39
gb|DT496635.1|DT496635 WS01123.BR_P14 PT-P-FL-A-2 Populus t... 38 0.39
gb|DT520534.1|DT520534 WS02447.B21_N03 PTxD-ICC-N-A-14 Popu... 38 0.39
>gb|DN492320.1|DN492320 X003G07.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X003G07 3', mRNA sequence
Length = 806
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 339 tttgctggtggagttcttcctgc 361
||||||||||||||| |||||||
Sbjct: 194 tttgctggtggagtttttcctgc 172
>gb|DT493290.1|DT493290 WS02553.C21_P02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_P02 3', mRNA sequence
Length = 799
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 574 ataaccctgtacaagggccctgc 596
|||||| ||||||||||||||||
Sbjct: 754 ataaccttgtacaagggccctgc 732
>gb|DT496635.1|DT496635 WS01123.BR_P14 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01123_P14 5', mRNA sequence
Length = 875
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 574 ataaccctgtacaagggccctgc 596
|||||| ||||||||||||||||
Sbjct: 626 ataaccttgtacaagggccctgc 648
>gb|DT520534.1|DT520534 WS02447.B21_N03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02447_N03 3', mRNA sequence
Length = 889
Score = 38.2 bits (19), Expect = 0.39
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 574 ataaccctgtacaagggccctgc 596
|||||| ||||||||||||||||
Sbjct: 769 ataaccttgtacaagggccctgc 747
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 61,048
Number of Sequences: 369679
Number of extensions: 61048
Number of successful extensions: 18726
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18722
Number of HSP's gapped (non-prelim): 4
length of query: 625
length of database: 203,408,664
effective HSP length: 19
effective length of query: 606
effective length of database: 196,384,763
effective search space: 119009166378
effective search space used: 119009166378
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)