BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS2h09.yg.3.5
(1992 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV130599.1|CV130599 B9SP06e11 Populus stem seasonal libr... 119 4e-025
gb|CX170067.1|CX170067 A03_69-2_01.ab1 leaf inoculated with... 115 7e-024
gb|CA924252.1|CA924252 MTU7CL.P3.E09 Aspen leaf cDNA Librar... 107 2e-021
gb|CF235007.1|CF235007 PtaJXT0017G2G0214 Poplar cDNA librar... 101 1e-019
gb|CN518843.1|CN518843 GQ0102.B3_N15 GQ010 Populus trichoca... 86 6e-015
gb|AI161768.1|AI161768 A006P56U Hybrid aspen plasmid librar... 74 2e-011
gb|BI130693.1|BI130693 G109P36Y Populus cambium cDNA librar... 68 1e-009
gb|BU816816.1|BU816816 N071F08 Populus bark cDNA library Po... 60 3e-007
gb|CN517658.1|CN517658 GQ0092.B3_H09 GQ009 Populus trichoca... 60 3e-007
gb|BI119647.1|BI119647 F003P03Y Populus flower cDNA library... 54 2e-005
gb|CV241047.1|CV241047 WS02511.B21_B06 PT-MB-N-A-15 Populus... 54 2e-005
gb|BU816560.1|BU816560 N066F09 Populus bark cDNA library Po... 52 8e-005
gb|BU882471.1|BU882471 UM77TD04 Populus flower cDNA library... 52 8e-005
gb|BU882839.1|BU882839 UM82TH11 Populus flower cDNA library... 52 8e-005
gb|AJ767093.1|AJ767093 AJ767093 Populus euphratica leaf adu... 52 8e-005
gb|DN501301.1|DN501301 UM82TH11.5pR Populus female catkins ... 52 8e-005
gb|CK319187.1|CK319187 X9P07h03 Populus stem seasonal libra... 50 3e-004
gb|BU815165.1|BU815165 N038A06 Populus bark cDNA library Po... 48 0.001
gb|BU831076.1|BU831076 T016H07 Populus apical shoot cDNA li... 48 0.001
gb|BU834887.1|BU834887 T066H09 Populus apical shoot cDNA li... 48 0.001
gb|BU892831.1|BU892831 P070A09 Populus petioles cDNA librar... 48 0.001
gb|AJ775854.1|AJ775854 AJ775854 Populus euphratica root 3-6... 48 0.001
gb|DN499003.1|DN499003 T016H07.5pR Populus shoot meristem c... 48 0.001
gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Po... 44 0.020
gb|DT509440.1|DT509440 WS02423.BR_L20 PTxD-ICC-N-A-14 Popul... 44 0.020
gb|DT509771.1|DT509771 WS02424.BR_K20 PTxD-ICC-N-A-14 Popul... 44 0.020
gb|DT514054.1|DT514054 WS02423.B21_L20 PTxD-ICC-N-A-14 Popu... 44 0.020
gb|BI069146.1|BI069146 C032P77U Populus strain T89 leaves P... 42 0.081
gb|BU827497.1|BU827497 K003P69P Populus apical shoot cDNA l... 42 0.081
gb|BU880404.1|BU880404 UM45TE12 Populus flower cDNA library... 42 0.081
gb|BU881691.1|BU881691 UM66TC03 Populus flower cDNA library... 42 0.081
gb|BU882806.1|BU882806 UM82TE06 Populus flower cDNA library... 42 0.081
gb|CK100437.1|CK100437 C032P77.5pR Populus strain T89 leave... 42 0.081
gb|DN500996.1|DN500996 UM45TE12.5pR Populus female catkins ... 42 0.081
gb|DV464490.1|DV464490 MTUNUL1.P28.B12 NUL Populus fremonti... 42 0.081
gb|DV464576.1|DV464576 MTUNUL1.P29.C05 NUL Populus fremonti... 42 0.081
gb|BI068659.1|BI068659 C025P31U Populus strain T89 leaves P... 40 0.32
gb|CX173886.1|CX173886 B11_69-113_03.ab1 leaf inoculated wi... 40 0.32
gb|BI127494.1|BI127494 G061P44Y Populus cambium cDNA librar... 38 1.3
gb|BU821608.1|BU821608 UB25CPE04 Populus tremula cambium cD... 38 1.3
gb|BU868208.1|BU868208 M112E10 Populus flower cDNA library ... 38 1.3
gb|BU884580.1|BU884580 R012F05 Populus root cDNA library Po... 38 1.3
gb|CA822124.1|CA822124 R04A09 two-month-old roots from clon... 38 1.3
gb|CV263587.1|CV263587 WS02022.B21_E03 PTxN-IB-N-A-11 Popul... 38 1.3
gb|CV274393.1|CV274393 WS0173.B21_C04 PTxD-NR-A-8 Populus t... 38 1.3
gb|DT469933.1|DT469933 WS01919.C21_F19 PT-DX-N-A-10 Populus... 38 1.3
gb|DT506628.1|DT506628 WS02416.BR_B08 PTxD-ICC-N-A-14 Popul... 38 1.3
gb|DT510711.1|DT510711 WS02427.BR_F16 PTxD-ICC-N-A-14 Popul... 38 1.3
gb|DT515360.1|DT515360 WS02427.B21_F16 PTxD-ICC-N-A-14 Popu... 38 1.3
gb|AI165848.1|AI165848 A092P75U Hybrid aspen plasmid librar... 36 5.0
gb|BI072998.1|BI072998 C091P46U Populus strain T89 leaves P... 36 5.0
gb|BI130753.1|BI130753 G110P33Y Populus cambium cDNA librar... 36 5.0
gb|BU810395.1|BU810395 UL70B08 Populus leaf cDNA library Po... 36 5.0
gb|BU877670.1|BU877670 V037G09 Populus flower cDNA library ... 36 5.0
gb|BU884952.1|BU884952 R018E05 Populus root cDNA library Po... 36 5.0
gb|BU895269.1|BU895269 X021F05 Populus wood cDNA library Po... 36 5.0
gb|BU895679.1|BU895679 X029D05 Populus wood cDNA library Po... 36 5.0
gb|BU896865.1|BU896865 X047A11 Populus wood cDNA library Po... 36 5.0
gb|BU897345.1|BU897345 X055E08 Populus wood cDNA library Po... 36 5.0
gb|CF227420.1|CF227420 PtaD4G12B0804 Poplar cDNA library fr... 36 5.0
gb|CF233538.1|CF233538 PtaJXO0024G2G0214 Poplar cDNA librar... 36 5.0
gb|CK099979.1|CK099979 A092P75.5pR Hybrid aspen plasmid lib... 36 5.0
gb|CN193407.1|CN193407 PtdH925 hybrid poplar systemically w... 36 5.0
gb|CN193408.1|CN193408 PtdH926A hybrid poplar systemically ... 36 5.0
gb|CV226012.1|CV226012 WS0163.B21_A14 PT-DX-A-7 Populus tri... 36 5.0
gb|CV263630.1|CV263630 WS02022.B21_F22 PTxN-IB-N-A-11 Popul... 36 5.0
gb|CV269517.1|CV269517 WS0208.B21_H14 PTxN-IB-N-A-11 Populu... 36 5.0
gb|CV280347.1|CV280347 WS0135.B21_O19 PTxD-IL-FL-A-4 Populu... 36 5.0
gb|CV280518.1|CV280518 WS0136.B21_J21 PTxD-IL-FL-A-4 Populu... 36 5.0
gb|CV280532.1|CV280532 WS0136.B21_K22 PTxD-IL-FL-A-4 Populu... 36 5.0
gb|CV280571.1|CV280571 WS0136.B21_N15 PTxD-IL-FL-A-4 Populu... 36 5.0
gb|CV280668.1|CV280668 WS0137.B21_E05 PTxD-IL-FL-A-4 Populu... 36 5.0
gb|CX168382.1|CX168382 D02_69-92_08.ab1 leaf inoculated wit... 36 5.0
gb|CX170735.1|CX170735 H09_69-14-1_15.ab1 leaf inoculated w... 36 5.0
gb|CX172218.1|CX172218 A04_69-57_02.ab1 leaf inoculated wit... 36 5.0
gb|CX173466.1|CX173466 D04_69-47_08.ab1 leaf inoculated wit... 36 5.0
gb|CX182268.1|CX182268 D05_45-28_07.ab1 leaf inoculated wit... 36 5.0
gb|CX183888.1|CX183888 E08_45-46_10.ab1 leaf inoculated wit... 36 5.0
gb|CX184862.1|CX184862 D07_45-35_07.ab1 leaf inoculated wit... 36 5.0
gb|DN500441.1|DN500441 UL50PD01.5pR Populus cold stressed l... 36 5.0
gb|DN503382.1|DN503382 Y010G08.5pR Populus infected leaf su... 36 5.0
gb|DT478714.1|DT478714 WS02523.BR_J10 PT-MB-N-A-15 Populus ... 36 5.0
gb|DT483904.1|DT483904 WS02523.B21_O07 PT-MB-N-A-15 Populus... 36 5.0
gb|DT491763.1|DT491763 WS02548.C21_L11 PT-MB-N-A-15 Populus... 36 5.0
gb|DT500989.1|DT500989 WS0131.BR_B02 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT501048.1|DT501048 WS0131.BR_E12 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT501134.1|DT501134 WS0131.BR_K02 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT501168.1|DT501168 WS0131.BR_M04 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT501220.1|DT501220 WS0131.BR_P08 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT501964.1|DT501964 WS01314.BR_O19 PTxD-IL-FL-A-4 Populu... 36 5.0
gb|DT501970.1|DT501970 WS01314.BR_P07 PTxD-IL-FL-A-4 Populu... 36 5.0
gb|DT502531.1|DT502531 WS0133.BR_E23 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT502832.1|DT502832 WS0134.BR_G11 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT502950.1|DT502950 WS0134.BR_N12 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT503229.1|DT503229 WS0135.BR_O19 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT503438.1|DT503438 WS0136.BR_J21 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT503454.1|DT503454 WS0136.BR_K22 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT503501.1|DT503501 WS0136.BR_N15 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT503614.1|DT503614 WS0137.BR_E05 PTxD-IL-FL-A-4 Populus... 36 5.0
gb|DT504835.1|DT504835 WS01314.B21_O19 PTxD-IL-FL-A-4 Popul... 36 5.0
gb|DT504841.1|DT504841 WS01314.B21_P07 PTxD-IL-FL-A-4 Popul... 36 5.0
gb|DT518965.1|DT518965 WS02439.B21_N16 PTxD-ICC-N-A-14 Popu... 36 5.0
gb|DT521054.1|DT521054 WS02033.B21_E11 PTxN-IB-N-A-11 Popul... 36 5.0
gb|DV463578.1|DV463578 MTUNUL1.P17.G04 NUL Populus fremonti... 36 5.0
emb|AJ567346.1|POP567346 Populus tremula x Populus tremuloi... 36 5.0
>gb|CV130599.1|CV130599 B9SP06e11 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 879
Score = 119 bits (60), Expect = 4e-025
Identities = 102/116 (87%)
Strand = Plus / Plus
Query: 522 tggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatgg 581
|||||||| |||||||| ||| | || || || |||||||||||||| |||||| |||||
Sbjct: 544 tggtctcagattgcagcacagttacctggaagaactgataatgagataaagaatttatgg 603
Query: 582 aactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
||||| ||||| ||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct: 604 aactcctgcattaagaagaagctgaggcagagaggcattgaccccaacactcacaa 659
Score = 117 bits (59), Expect = 2e-024
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||||||||||||||| |||||||||||| | ||||| || || ||||| ||||||
Sbjct: 280 atggggaggcattcttgctgttacaagcagaagttaagaaaaggcctgtggtctcctgag 339
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 376
|||||||||||||| ||||| | || || |||||||| |||||||| |||||||||||
Sbjct: 340 gaggatgagaaacttctgaattatattactaagcatggacatggctgttggagctctgt 398
>gb|CX170067.1|CX170067 A03_69-2_01.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 669
Score = 115 bits (58), Expect = 7e-024
Identities = 310/394 (78%)
Strand = Plus / Plus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
||||||||||| ||||| ||||||||||||||||| || || || || ||||| ||||||
Sbjct: 200 atggggaggcactcttgttgctacaagcagaagctaaggaaaggcctgtggtcgcctgag 259
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
|| |||||||||||| | | || || || ||| |||||||||| || |||||||||||
Sbjct: 260 gaagatgagaaactcttaaggcatatcaccaagtatggccatggttgttggagctctgtc 319
Query: 378 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 437
|| || | ||||| | |||||||| || ||||| || || || |||||||| || ||
Sbjct: 320 ccaaagcaagctggtttgcaaaggtgtggcaagagctgcagactaaggtggattaattac 379
Query: 438 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgag 497
||||||| || | |||||||| ||||| | || | ||||| ||||||| || |||
Sbjct: 380 ttgaggcctgatttgaagagaggcacattctcacagcaggaagagaacctcataattgag 439
Query: 498 ctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggact 557
|| || || || || || || ||||||||||| ||||| || || |||| || |||||
Sbjct: 440 cttcatgcagttctaggaaataggtggtctcagattgcggcacaattgcctggaaggaca 499
Query: 558 gataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggc 617
|| ||||| || ||||||||||||||||| ||| | ||||| || || ||||||| ||||
Sbjct: 500 gacaatgaaataaagaatctatggaactcttgcttaaagaaaaaacttaggcagagaggc 559
Query: 618 attgatcccaacacccacaagccacttactgagg 651
||||| || |||||||| |||||| ||||||
Sbjct: 560 attgaccctgttacccacaaaccactttctgagg 593
>gb|CA924252.1|CA924252 MTU7CL.P3.E09 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 747
Score = 107 bits (54), Expect = 2e-021
Identities = 309/394 (78%)
Strand = Plus / Minus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
||||||||||| ||||| ||||||||||||||||| || || || || ||||| || |||
Sbjct: 571 atggggaggcactcttgttgctacaagcagaagctaaggaaaggcctgtggtcgcccgag 512
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 377
|| |||||||||||| | | || || || ||| |||||||||| || |||||||||||
Sbjct: 511 gaagatgagaaactcttaaggcatatcaccaagtatggccatggttgttggagctctgtc 452
Query: 378 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 437
|| || | ||||| | |||||||| || ||||| || || || |||||||| || ||
Sbjct: 451 ccaaagcaagctggtttgcaaaggtgtggcaagagctgcagactaaggtggattaattac 392
Query: 438 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgag 497
||||||| || | |||||||| ||||| | || | ||||| ||||||| || ||
Sbjct: 391 ttgaggcctgatttgaagagaggcacattctcacagcaggaagagaacctcataattgac 332
Query: 498 ctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggact 557
|| || || || || || || ||||||||||| ||||| || ||| |||| || |||||
Sbjct: 331 cttcatgcagttctaggaaataggtggtctcagattgcggcacagttgcccggaaggaca 272
Query: 558 gataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggc 617
|| ||||| || ||||||||||||||||| ||| | ||||| || || ||||||| ||||
Sbjct: 271 gacaatgaaataaagaatctatggaactcttgcttaaagaaaaaacttaggcagagaggc 212
Query: 618 attgatcccaacacccacaagccacttactgagg 651
||||| || |||||||| |||||| ||||||
Sbjct: 211 attgaccctgttacccacaaaccactttctgagg 178
>gb|CF235007.1|CF235007 PtaJXT0017G2G0214 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 725
Score = 101 bits (51), Expect = 1e-019
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
|||||||||||||||||||| |||||||||||| | ||||| || || ||||| ||||||
Sbjct: 229 atggggaggcattcttgctgttacaagcagaagttaagaaaaggcctgtggtctcctgag 288
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 376
|| |||||||| || ||||| | || || |||||||| |||||||| |||||||||||
Sbjct: 289 gaagatgagaagcttctgaattatattactaagcatggacatggctgttggagctctgt 347
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 522 tggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatgg 581
|||||||| |||||||| ||| | || || || |||||||||||||| |||||| |||||
Sbjct: 493 tggtctcagattgcagcacagttacctggaagaactgataatgagataaagaatttatgg 552
Query: 582 aactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 637
||||| ||||| || || ||||||||||||| |||||||| |||||||| |||||
Sbjct: 553 aactcctgcattaanaanaagctgaggcagaggggcattgaccccaacactcacaa 608
>gb|CN518843.1|CN518843 GQ0102.B3_N15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_N15 5', mRNA sequence
Length = 570
Score = 85.7 bits (43), Expect = 6e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 258 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 317
||||||||||| ||||| ||||||||||||||||| || || || || ||||| ||||||
Sbjct: 174 atggggaggcactcttgttgctacaagcagaagctaaggaaaggcctgtggtcgcctgag 233
Query: 318 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 376
|| |||||||||||| | | || || || ||| |||||||||| || |||||||||||
Sbjct: 234 gaagatgagaaactcttaaggcatatcaccaagtatggccatggttgttggagctctgt 292
>gb|AI161768.1|AI161768 A006P56U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 448
Score = 73.8 bits (37), Expect = 2e-011
Identities = 97/116 (83%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 261 gggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgaggag 320
||||||||| ||||||| |||||||||||| | ||||| || || | ||| ||||||||
Sbjct: 155 gggaggcat-cttgctgttacaagcagaagttaagaaaaggcctgtngtctcctgaggaa 213
Query: 321 gatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 376
|||||||| || ||||| | || || |||||||| |||||||| |||||||||||
Sbjct: 214 gatgagaagcttctgaattatattactaagcatggacatggctgttggagctctgt 269
>gb|BI130693.1|BI130693 G109P36Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 311
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 411 agttgtaggctgaggtggataaactatctgaggccagacctcaagagagg 460
|||||||| ||||||||||||||||| |||||||| || |||||||||||
Sbjct: 181 agttgtagactgaggtggataaactacctgaggcctgatctcaagagagg 230
>gb|BU816816.1|BU816816 N071F08 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 385
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagac 449
|||||||||||||| || |||||||||||||| |||||||||
Sbjct: 223 aagagttgtaggctaagatggataaactatcttaggccagac 264
>gb|CN517658.1|CN517658 GQ0092.B3_H09 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_H09 5', mRNA sequence
Length = 532
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 411 agttgtaggctgaggtggataaactatctgaggccagacctcaagagagg 460
|||||||| ||||||||||||||||| || ||||| || |||||||||||
Sbjct: 52 agttgtagactgaggtggataaactacctaaggcctgatctcaagagagg 101
>gb|BI119647.1|BI119647 F003P03Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 337
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 411 agttgtaggctgaggtggataaactatctgaggccagac 449
||||||||||| || |||||||||||||| |||||||||
Sbjct: 184 agttgtaggctaagatggataaactatcttaggccagac 222
>gb|CV241047.1|CV241047 WS02511.B21_B06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02511_B06 3', mRNA sequence
Length = 766
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 544 tgccagggaggactgataatgagatcaagaa 574
|||||||||| ||||||||||||||||||||
Sbjct: 759 tgccagggagaactgataatgagatcaagaa 729
>gb|BU816560.1|BU816560 N066F09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 645
Score = 52.0 bits (26), Expect = 8e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagac 449
|||||||||||||| || |||||||||||||| | |||||||
Sbjct: 219 aagagttgtaggctaagatggataaactatcttatgccagac 260
>gb|BU882471.1|BU882471 UM77TD04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 388
Score = 52.0 bits (26), Expect = 8e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 387 gctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggcca 446
|||||||||||||| ||||| ||||| ||||| || ||||||| ||||| || |||||
Sbjct: 228 gctgggcttcaaagatgcgggaagagctgtagactcaggtggactaactacctccggcca 287
Query: 447 gacctcaagagagg 460
|| ||||||||||
Sbjct: 288 gatatcaagagagg 301
>gb|BU882839.1|BU882839 UM82TH11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 584
Score = 52.0 bits (26), Expect = 8e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 387 gctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggcca 446
|||||||||||||| ||||| ||||| ||||| || ||||||| ||||| || |||||
Sbjct: 228 gctgggcttcaaagatgcgggaagagctgtagactcaggtggactaactacctccggcca 287
Query: 447 gacctcaagagagg 460
|| ||||||||||
Sbjct: 288 gatatcaagagagg 301
Score = 42.1 bits (21), Expect = 0.081
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 555 actgataatgagatcaagaat 575
|||||||||||||||||||||
Sbjct: 396 actgataatgagatcaagaat 416
>gb|AJ767093.1|AJ767093 AJ767093 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100001D02F1, mRNA sequence
Length = 573
Score = 52.0 bits (26), Expect = 8e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 411 agttgtaggctgaggtggataaactatctgaggccaga 448
||||||||||| || |||||||||||||| ||||||||
Sbjct: 82 agttgtaggctaagatggataaactatcttaggccaga 119
>gb|DN501301.1|DN501301 UM82TH11.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM82TH11 5', mRNA sequence
Length = 716
Score = 52.0 bits (26), Expect = 8e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 387 gctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggcca 446
|||||||||||||| ||||| ||||| ||||| || ||||||| ||||| || |||||
Sbjct: 228 gctgggcttcaaagatgcgggaagagctgtagactcaggtggactaactacctccggcca 287
Query: 447 gacctcaagagagg 460
|| ||||||||||
Sbjct: 288 gatatcaagagagg 301
Score = 42.1 bits (21), Expect = 0.081
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 555 actgataatgagatcaagaat 575
|||||||||||||||||||||
Sbjct: 396 actgataatgagatcaagaat 416
>gb|CK319187.1|CK319187 X9P07h03 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 776
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 543 ctgccagggaggactgataatgagatcaagaat 575
||||| || ||||||||||||||||||||||||
Sbjct: 319 ctgcctggaaggactgataatgagatcaagaat 351
>gb|BU815165.1|BU815165 N038A06 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 693
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 414 tgtaggctgaggtggataaactatctgaggccagac 449
|||||||| || |||||||||||||| |||||||||
Sbjct: 330 tgtaggctcagatggataaactatcttaggccagac 365
>gb|BU831076.1|BU831076 T016H07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 714
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 414 tgtaggctgaggtggataaactatctgaggccagac 449
|||||||| || |||||||||||||| |||||||||
Sbjct: 251 tgtaggctcagatggataaactatcttaggccagac 286
>gb|BU834887.1|BU834887 T066H09 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 494
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 414 tgtaggctgaggtggataaactatctgaggccagac 449
|||||||| || |||||||||||||| |||||||||
Sbjct: 251 tgtaggctcagatggataaactatcttaggccagac 286
>gb|BU892831.1|BU892831 P070A09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 674
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 393 cttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccaga 448
|||||||| || |||||||| || ||||| || |||| |||||||||||||||||
Sbjct: 152 cttcaaagatgtggaaagagctgcaggcttagatggactaactatctgaggccaga 207
Score = 42.1 bits (21), Expect = 0.081
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 551 gaggactgataatgagatcaagaat 575
|||||| ||||||||||||||||||
Sbjct: 310 gaggacagataatgagatcaagaat 334
>gb|AJ775854.1|AJ775854 AJ775854 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400006D03F1, mRNA sequence
Length = 626
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 530 aattgcagcgcagctgccagggaggactgataatga 565
||||||||| ||| ||||||| ||||||||||||||
Sbjct: 169 aattgcagctcagttgccaggcaggactgataatga 204
>gb|DN499003.1|DN499003 T016H07.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T016H07 5', mRNA sequence
Length = 779
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 414 tgtaggctgaggtggataaactatctgaggccagac 449
|||||||| || |||||||||||||| |||||||||
Sbjct: 251 tgtaggctcagatggataaactatcttaggccagac 286
>gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060B05 5', mRNA sequence
Length = 673
Score = 44.1 bits (22), Expect = 0.020
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 387 gctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggcca 446
|||||| | |||||||| |||||||||||| | || | |||| ||||||||||||||
Sbjct: 146 gctgggttgcaaaggtgtggaaagagttgtcgtcttcgttggactaactatctgaggcct 205
Query: 447 gacctcaagagagg 460
|| ||||||||||
Sbjct: 206 gatatcaagagagg 219
>gb|DT509440.1|DT509440 WS02423.BR_L20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_L20 5', mRNA sequence
Length = 767
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
||||||||||||||||| ||| | |||||||| ||||||| | |||||||||
Sbjct: 664 aagagttgtaggctgagatggcttaactatcttcggccagatattaagagaggg 611
>gb|DT509771.1|DT509771 WS02424.BR_K20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_K20 5', mRNA sequence
Length = 803
Score = 44.1 bits (22), Expect = 0.020
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 399 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 458
|||||||| ||||| || || ||||||||| ||| ||||||||||| || ||||||||
Sbjct: 145 aggtgcgggaagagctgcagattgaggtggacaaattatctgaggcctgatatcaagaga 204
Query: 459 gg 460
||
Sbjct: 205 gg 206
>gb|DT514054.1|DT514054 WS02423.B21_L20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_L20 3', mRNA sequence
Length = 897
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
||||||||||||||||| ||| | |||||||| ||||||| | |||||||||
Sbjct: 486 aagagttgtaggctgagatggcttaactatcttcggccagatattaagagaggg 539
>gb|BI069146.1|BI069146 C032P77U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 413
Score = 42.1 bits (21), Expect = 0.081
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1466 acagctgcaggtagcaccaga 1486
|||||||||||||||||||||
Sbjct: 147 acagctgcaggtagcaccaga 167
>gb|BU827497.1|BU827497 K003P69P Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.081
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1466 acagctgcaggtagcaccaga 1486
|||||||||||||||||||||
Sbjct: 454 acagctgcaggtagcaccaga 474
>gb|BU880404.1|BU880404 UM45TE12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 506
Score = 42.1 bits (21), Expect = 0.081
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 551 gaggactgataatgagatcaagaat 575
|||||| ||||||||||||||||||
Sbjct: 321 gaggacagataatgagatcaagaat 345
>gb|BU881691.1|BU881691 UM66TC03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 586
Score = 42.1 bits (21), Expect = 0.081
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1466 acagctgcaggtagcaccaga 1486
|||||||||||||||||||||
Sbjct: 418 acagctgcaggtagcaccaga 438
>gb|BU882806.1|BU882806 UM82TE06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 586
Score = 42.1 bits (21), Expect = 0.081
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1466 acagctgcaggtagcaccaga 1486
|||||||||||||||||||||
Sbjct: 387 acagctgcaggtagcaccaga 407
>gb|CK100437.1|CK100437 C032P77.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C032P77 5', mRNA sequence
Length = 417
Score = 42.1 bits (21), Expect = 0.081
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1466 acagctgcaggtagcaccaga 1486
|||||||||||||||||||||
Sbjct: 154 acagctgcaggtagcaccaga 174
>gb|DN500996.1|DN500996 UM45TE12.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM45TE12 5', mRNA sequence
Length = 801
Score = 42.1 bits (21), Expect = 0.081
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 551 gaggactgataatgagatcaagaat 575
|||||| ||||||||||||||||||
Sbjct: 320 gaggacagataatgagatcaagaat 344
>gb|DV464490.1|DV464490 MTUNUL1.P28.B12 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 811
Score = 42.1 bits (21), Expect = 0.081
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1466 acagctgcaggtagcaccaga 1486
|||||||||||||||||||||
Sbjct: 679 acagctgcaggtagcaccaga 699
>gb|DV464576.1|DV464576 MTUNUL1.P29.C05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 775
Score = 42.1 bits (21), Expect = 0.081
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 551 gaggactgataatgagatcaagaat 575
|||||| ||||||||||||||||||
Sbjct: 312 gaggacagataatgagatcaagaat 336
>gb|BI068659.1|BI068659 C025P31U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 610
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1756 tgttctagagtctcctttcc 1775
||||||||||||||||||||
Sbjct: 437 tgttctagagtctcctttcc 418
>gb|CX173886.1|CX173886 B11_69-113_03.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 705
Score = 40.1 bits (20), Expect = 0.32
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 402 tgcggaaagagttgtaggctgaggtggataaactatctgaggcc 445
||||| ||||| ||||| |||||||||||||||| |||||||
Sbjct: 400 tgcggcaagagctgtagattgaggtggataaactacttgaggcc 443
>gb|BI127494.1|BI127494 G061P44Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 557
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 558 gataatgagatcaagaatc 576
|||||||||||||||||||
Sbjct: 328 gataatgagatcaagaatc 346
>gb|BU821608.1|BU821608 UB25CPE04 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 446
Score = 38.2 bits (19), Expect = 1.3
Identities = 67/83 (80%)
Strand = Plus / Plus
Query: 357 catggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgt 416
||||| ||||||||||| ||||| ||||| || || || || || || |||||||| ||
Sbjct: 312 catggttgctggagctcagttcctaaacttgcaggtctgcagagatgtggaaagagctgc 371
Query: 417 aggctgaggtggataaactatct 439
|| || || |||||||| |||||
Sbjct: 372 agactaagatggataaattatct 394
>gb|BU868208.1|BU868208 M112E10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 450
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 558 gataatgagatcaagaatc 576
|||||||||||||||||||
Sbjct: 290 gataatgagatcaagaatc 308
>gb|BU884580.1|BU884580 R012F05 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 738
Score = 38.2 bits (19), Expect = 1.3
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 516 aacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
||||| |||||| | |||||| | || || ||||| || ||||||||||| ||||||||
Sbjct: 325 aacagatggtctaagattgcatcacatctaccaggaagaactgataatgaaatcaagaa 383
>gb|CA822124.1|CA822124 R04A09 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 690
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 558 gataatgagatcaagaatc 576
|||||||||||||||||||
Sbjct: 366 gataatgagatcaagaatc 384
>gb|CV263587.1|CV263587 WS02022.B21_E03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_E03 3', mRNA sequence
Length = 941
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 558 gataatgagatcaagaatc 576
|||||||||||||||||||
Sbjct: 908 gataatgagatcaagaatc 890
>gb|CV274393.1|CV274393 WS0173.B21_C04 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0173_C04 3', mRNA sequence
Length = 932
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 558 gataatgagatcaagaatc 576
|||||||||||||||||||
Sbjct: 923 gataatgagatcaagaatc 905
>gb|DT469933.1|DT469933 WS01919.C21_F19 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_F19 3', mRNA sequence
Length = 868
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 558 gataatgagatcaagaatc 576
|||||||||||||||||||
Sbjct: 782 gataatgagatcaagaatc 764
>gb|DT506628.1|DT506628 WS02416.BR_B08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_B08 5', mRNA sequence
Length = 858
Score = 38.2 bits (19), Expect = 1.3
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 516 aacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 574
||||| |||||| | |||||| | || || ||||| || ||||||||||| ||||||||
Sbjct: 351 aacagatggtctaagattgcatcacatctaccaggaagaactgataatgaaatcaagaa 409
>gb|DT510711.1|DT510711 WS02427.BR_F16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_F16 5', mRNA sequence
Length = 512
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1765 gtctcctttcctttctctt 1783
|||||||||||||||||||
Sbjct: 46 gtctcctttcctttctctt 64
>gb|DT515360.1|DT515360 WS02427.B21_F16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_F16 3', mRNA sequence
Length = 512
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1765 gtctcctttcctttctctt 1783
|||||||||||||||||||
Sbjct: 467 gtctcctttcctttctctt 449
>gb|AI165848.1|AI165848 A092P75U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 415
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 50 ccagggagaacagataatgagataaagaat 79
>gb|BI072998.1|BI072998 C091P46U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 360
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1277 cattggacaagaaaaaga 1294
||||||||||||||||||
Sbjct: 345 cattggacaagaaaaaga 328
>gb|BI130753.1|BI130753 G110P33Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 515
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 402 ccagggagaacagataatgagataaagaat 431
>gb|BU810395.1|BU810395 UL70B08 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 360
Score = 36.2 bits (18), Expect = 5.0
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
|||||||| |||||||| ||||| ||||| || |||| || |||||||||||
Sbjct: 255 aagagttgcaggctgagatggatgaactaccttcggcctgatatcaagagaggg 308
>gb|BU877670.1|BU877670 V037G09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 439
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 624 cccaacacccacaagcca 641
||||||||||||||||||
Sbjct: 132 cccaacacccacaagcca 115
>gb|BU884952.1|BU884952 R018E05 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 675
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 425 ccagggagaacagataatgagataaagaat 454
>gb|BU895269.1|BU895269 X021F05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 671
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 516 ccagggagaacagataatgagataaagaat 545
>gb|BU895679.1|BU895679 X029D05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 608
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1277 cattggacaagaaaaaga 1294
||||||||||||||||||
Sbjct: 320 cattggacaagaaaaaga 303
>gb|BU896865.1|BU896865 X047A11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 550
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 234 ccagggagaacagataatgagataaagaat 263
>gb|BU897345.1|BU897345 X055E08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 530
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 246 ccagggagaacagataatgagataaagaat 275
>gb|CF227420.1|CF227420 PtaD4G12B0804 Poplar cDNA library from wood tissues Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 576
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 424 ccagggagaacagataatgagataaagaat 453
>gb|CF233538.1|CF233538 PtaJXO0024G2G0214 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 732
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 81 ccagggagaacagataatgagataaagaat 110
>gb|CK099979.1|CK099979 A092P75.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A092P75 5', mRNA sequence
Length = 730
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 95 ccagggagaacagataatgagataaagaat 124
>gb|CN193407.1|CN193407 PtdH925 hybrid poplar systemically wound-induced leaf cDNA library
Populus trichocarpa x Populus deltoides cDNA 5, mRNA
sequence
Length = 341
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 295 ccagggagaacagataatgagataaagaat 324
>gb|CN193408.1|CN193408 PtdH926A hybrid poplar systemically wound-induced leaf cDNA library
Populus trichocarpa x Populus deltoides cDNA 5, mRNA
sequence
Length = 397
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 340 ccagggagaacagataatgagataaagaat 369
>gb|CV226012.1|CV226012 WS0163.B21_A14 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_A14
3', mRNA sequence
Length = 837
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 761 ccagggagaacagataatgagataaagaat 732
>gb|CV263630.1|CV263630 WS02022.B21_F22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_F22 3', mRNA sequence
Length = 913
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 431 ccagggagaacagataatgagataaagaat 460
>gb|CV269517.1|CV269517 WS0208.B21_H14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0208_H14 3', mRNA sequence
Length = 788
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 725 ccagggagaacagataatgagataaagaat 696
>gb|CV280347.1|CV280347 WS0135.B21_O19 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_O19 3', mRNA sequence
Length = 878
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 691 ccagggagaacagataatgagataaagaat 662
>gb|CV280518.1|CV280518 WS0136.B21_J21 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_J21 3', mRNA sequence
Length = 843
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 676 ccagggagaacagataatgagataaagaat 647
>gb|CV280532.1|CV280532 WS0136.B21_K22 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_K22 3', mRNA sequence
Length = 841
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 676 ccagggagaacagataatgagataaagaat 647
>gb|CV280571.1|CV280571 WS0136.B21_N15 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_N15 3', mRNA sequence
Length = 842
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 676 ccagggagaacagataatgagataaagaat 647
>gb|CV280668.1|CV280668 WS0137.B21_E05 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_E05 3', mRNA sequence
Length = 824
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 676 ccagggagaacagataatgagataaagaat 647
>gb|CX168382.1|CX168382 D02_69-92_08.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 681
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 779 aatgctgatgcccgtgta 796
||||||||||||||||||
Sbjct: 405 aatgctgatgcccgtgta 422
>gb|CX170735.1|CX170735 H09_69-14-1_15.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 650
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1506 caaagaatgcaactatct 1523
||||||||||||||||||
Sbjct: 597 caaagaatgcaactatct 580
>gb|CX172218.1|CX172218 A04_69-57_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 458
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1848 ggtggaaattaaataaat 1865
||||||||||||||||||
Sbjct: 158 ggtggaaattaaataaat 141
>gb|CX173466.1|CX173466 D04_69-47_08.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 656
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 356 ccagggagaacagataatgagataaagaat 327
>gb|CX182268.1|CX182268 D05_45-28_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 638
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1848 ggtggaaattaaataaat 1865
||||||||||||||||||
Sbjct: 149 ggtggaaattaaataaat 132
>gb|CX183888.1|CX183888 E08_45-46_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 521
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1277 cattggacaagaaaaaga 1294
||||||||||||||||||
Sbjct: 345 cattggacaagaaaaaga 328
>gb|CX184862.1|CX184862 D07_45-35_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 688
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1277 cattggacaagaaaaaga 1294
||||||||||||||||||
Sbjct: 364 cattggacaagaaaaaga 347
>gb|DN500441.1|DN500441 UL50PD01.5pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL50PD01 5',
mRNA sequence
Length = 656
Score = 36.2 bits (18), Expect = 5.0
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 408 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggg 461
|||||||| |||||||| ||||| ||||| || |||| || |||||||||||
Sbjct: 282 aagagttgcaggctgagatggatgaactaccttcggcctgatatcaagagaggg 335
>gb|DN503382.1|DN503382 Y010G08.5pR Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y010G08 5', mRNA sequence
Length = 378
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1050 ccagtttcaccatcggcc 1067
||||||||||||||||||
Sbjct: 188 ccagtttcaccatcggcc 205
>gb|DT478714.1|DT478714 WS02523.BR_J10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_J10 5', mRNA sequence
Length = 838
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 267 ccagggagaacagataatgagataaagaat 238
>gb|DT483904.1|DT483904 WS02523.B21_O07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_O07 3', mRNA sequence
Length = 912
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 558 gataatgagatcaagaat 575
||||||||||||||||||
Sbjct: 738 gataatgagatcaagaat 721
>gb|DT491763.1|DT491763 WS02548.C21_L11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02548_L11 3', mRNA sequence
Length = 823
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 558 gataatgagatcaagaat 575
||||||||||||||||||
Sbjct: 795 gataatgagatcaagaat 778
>gb|DT500989.1|DT500989 WS0131.BR_B02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_B02 5', mRNA sequence
Length = 851
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 175 ccagggagaacagataatgagataaagaat 204
>gb|DT501048.1|DT501048 WS0131.BR_E12 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_E12 5', mRNA sequence
Length = 841
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 181 ccagggagaacagataatgagataaagaat 210
>gb|DT501134.1|DT501134 WS0131.BR_K02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_K02 5', mRNA sequence
Length = 702
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 68 ccagggagaacagataatgagataaagaat 97
>gb|DT501168.1|DT501168 WS0131.BR_M04 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_M04 5', mRNA sequence
Length = 784
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 182 ccagggagaacagataatgagataaagaat 211
>gb|DT501220.1|DT501220 WS0131.BR_P08 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_P08 5', mRNA sequence
Length = 772
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 138 ccagggagaacagataatgagataaagaat 167
>gb|DT501964.1|DT501964 WS01314.BR_O19 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_O19 5', mRNA sequence
Length = 852
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 177 ccagggagaacagataatgagataaagaat 206
>gb|DT501970.1|DT501970 WS01314.BR_P07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_P07 5', mRNA sequence
Length = 851
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 177 ccagggagaacagataatgagataaagaat 206
>gb|DT502531.1|DT502531 WS0133.BR_E23 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0133_E23 5', mRNA sequence
Length = 857
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 183 ccagggagaacagataatgagataaagaat 212
>gb|DT502832.1|DT502832 WS0134.BR_G11 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_G11 5', mRNA sequence
Length = 765
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 177 ccagggagaacagataatgagataaagaat 206
>gb|DT502950.1|DT502950 WS0134.BR_N12 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_N12 5', mRNA sequence
Length = 759
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 177 ccagggagaacagataatgagataaagaat 206
>gb|DT503229.1|DT503229 WS0135.BR_O19 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0135_O19 5', mRNA sequence
Length = 852
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 177 ccagggagaacagataatgagataaagaat 206
>gb|DT503438.1|DT503438 WS0136.BR_J21 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_J21 5', mRNA sequence
Length = 852
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 177 ccagggagaacagataatgagataaagaat 206
>gb|DT503454.1|DT503454 WS0136.BR_K22 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_K22 5', mRNA sequence
Length = 851
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 177 ccagggagaacagataatgagataaagaat 206
>gb|DT503501.1|DT503501 WS0136.BR_N15 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_N15 5', mRNA sequence
Length = 850
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 177 ccagggagaacagataatgagataaagaat 206
>gb|DT503614.1|DT503614 WS0137.BR_E05 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_E05 5', mRNA sequence
Length = 851
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 177 ccagggagaacagataatgagataaagaat 206
>gb|DT504835.1|DT504835 WS01314.B21_O19 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_O19 3', mRNA sequence
Length = 845
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 676 ccagggagaacagataatgagataaagaat 647
>gb|DT504841.1|DT504841 WS01314.B21_P07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_P07 3', mRNA sequence
Length = 846
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 676 ccagggagaacagataatgagataaagaat 647
>gb|DT518965.1|DT518965 WS02439.B21_N16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02439_N16 3', mRNA sequence
Length = 874
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 738 ccagggagaacagataatgagataaagaat 709
>gb|DT521054.1|DT521054 WS02033.B21_E11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02033_E11 3', mRNA sequence
Length = 903
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 387 gctgggcttcaaaggtgcggaaagagttgt 416
|||||||||||||| || || |||||||||
Sbjct: 581 gctgggcttcaaagatgtggcaagagttgt 610
>gb|DV463578.1|DV463578 MTUNUL1.P17.G04 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 822
Score = 36.2 bits (18), Expect = 5.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1848 ggtggaaattaaataaat 1865
||||||||||||||||||
Sbjct: 70 ggtggaaattaaataaat 53
>emb|AJ567346.1|POP567346 Populus tremula x Populus tremuloides mRNA for MYB transcription
factor R2R3 type (myb gene)
Length = 813
Score = 36.2 bits (18), Expect = 5.0
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 546 ccagggaggactgataatgagatcaagaat 575
|||||||| || ||||||||||| ||||||
Sbjct: 292 ccagggagaacagataatgagataaagaat 321
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 280,635
Number of Sequences: 369679
Number of extensions: 280635
Number of successful extensions: 79826
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79649
Number of HSP's gapped (non-prelim): 173
length of query: 1992
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1972
effective length of database: 196,015,084
effective search space: 386541745648
effective search space used: 386541745648
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)