BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665460.2.1
(649 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ779108.1|AJ779108 AJ779108 Populus euphratica cambium ... 42 0.026
gb|CA927645.1|CA927645 MTU6TR.P11.D04 Aspen root cDNA Libra... 38 0.40
gb|CA932381.1|CA932381 MTU5CS.P12.C01 Aspen stem cDNA Libra... 38 0.40
gb|CF119238.1|CF119238 MTU10CS.P15.C05 Aspen stem cDNA Libr... 38 0.40
gb|CK092080.1|CK092080 G064P70.3pR Populus tension wood cDN... 38 0.40
gb|CV233982.1|CV233982 WS01213.B21_C07 PT-GT-FL-A-3 Populus... 38 0.40
gb|CX658999.1|CX658999 PO01025B11 Poplar SC cDNA library Po... 38 0.40
gb|CX659246.1|CX659246 PO01028C06 Poplar SC cDNA library Po... 38 0.40
gb|DT471248.1|DT471248 WS01213.BR_C07 PT-GT-FL-A-3 Populus ... 38 0.40
gb|DT472101.1|DT472101 WS01225.BR.1_C17 PT-GT-FL-A-3 Populu... 38 0.40
>gb|AJ779108.1|AJ779108 AJ779108 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600011F02F1, mRNA sequence
Length = 340
Score = 42.1 bits (21), Expect = 0.026
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 273 cgccacctccacctccaccta 253
>gb|CA927645.1|CA927645 MTU6TR.P11.D04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 594
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 411 cgccacctccacctccacc 429
|||||||||||||||||||
Sbjct: 171 cgccacctccacctccacc 153
>gb|CA932381.1|CA932381 MTU5CS.P12.C01 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 592
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 411 cgccacctccacctccacc 429
|||||||||||||||||||
Sbjct: 404 cgccacctccacctccacc 422
>gb|CF119238.1|CF119238 MTU10CS.P15.C05 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 597
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 411 cgccacctccacctccacc 429
|||||||||||||||||||
Sbjct: 403 cgccacctccacctccacc 421
>gb|CK092080.1|CK092080 G064P70.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G064P70 3', mRNA sequence
Length = 666
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 518 gccacctccacctccacct 500
>gb|CV233982.1|CV233982 WS01213.B21_C07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_C07 3', mRNA sequence
Length = 383
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 273 gccacctccacctccacct 255
>gb|CX658999.1|CX658999 PO01025B11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025B11 5', mRNA sequence
Length = 701
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 405 gccacctccacctccacct 423
>gb|CX659246.1|CX659246 PO01028C06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01028C06 5', mRNA sequence
Length = 668
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 405 gccacctccacctccacct 423
>gb|DT471248.1|DT471248 WS01213.BR_C07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_C07 5', mRNA sequence
Length = 351
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 79 gccacctccacctccacct 97
>gb|DT472101.1|DT472101 WS01225.BR.1_C17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_C17 5', mRNA sequence
Length = 851
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 412 gccacctccacctccacct 430
|||||||||||||||||||
Sbjct: 254 gccacctccacctccacct 272
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,612
Number of Sequences: 369679
Number of extensions: 55612
Number of successful extensions: 15641
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15609
Number of HSP's gapped (non-prelim): 24
length of query: 649
length of database: 203,408,664
effective HSP length: 19
effective length of query: 630
effective length of database: 196,384,763
effective search space: 123722400690
effective search space used: 123722400690
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)