BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448655.2.1
(682 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP931986.1|BP931986 BP931986 full-length enriched poplar... 92 3e-017
gb|BP934641.1|BP934641 BP934641 full-length enriched poplar... 92 3e-017
gb|DT517796.1|DT517796 WS02435.B21_F07 PTxD-ICC-N-A-14 Popu... 92 3e-017
gb|CX658359.1|CX658359 PO01034B11 Poplar SC cDNA library Po... 84 8e-015
gb|DN489710.1|DN489710 T072G12.3pR Populus shoot meristem c... 84 8e-015
gb|CF236403.1|CF236403 PtaJXT2D1D0107 Poplar cDNA library f... 82 3e-014
gb|BP931647.1|BP931647 BP931647 full-length enriched poplar... 80 1e-013
gb|CN522673.1|CN522673 GQ0124.B3_M18 GQ012 Populus trichoca... 72 3e-011
gb|BP934563.1|BP934563 BP934563 full-length enriched poplar... 52 3e-005
gb|DN488487.1|DN488487 S001B09.3pR Populus imbibed seed cDN... 52 3e-005
gb|CN520588.1|CN520588 GQ0105.B3_E10 GQ010 Populus trichoca... 42 0.027
gb|CV241881.1|CV241881 WS02513.B21_I07 PT-MB-N-A-15 Populus... 42 0.027
gb|CV245979.1|CV245979 WS0259.B21_O11 PT-MB-N-A-15 Populus ... 42 0.027
gb|DV464349.1|DV464349 MTUNUL1.P26.D03 NUL Populus fremonti... 38 0.42
>gb|BP931986.1|BP931986 BP931986 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_G20.r 3', mRNA sequence
Length = 601
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Minus
Query: 200 acaaagtatattccattctatggaggagcagaataccatgactatcatcattatgtagga 259
||||| ||||||||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 495 acaaaatatattccattttatggtggtgcagactaccatgattaccatcattatgttgga 436
Query: 260 ggccagagccaaagcaattttgcttctgttttcacttactgtgatt 305
|| || ||||| ||||| ||||| || || ||||||||||||||||
Sbjct: 435 ggacaaagccagagcaactttgcatcagtgttcacttactgtgatt 390
Score = 42.1 bits (21), Expect = 0.027
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 95 ccagccattgttccaggccacatgatcacattctggctctggatt 139
||||| || ||||| || |||||||||||||| ||| ||||||||
Sbjct: 600 ccagcaatggttcctgggcacatgatcacattttggttctggatt 556
>gb|BP934641.1|BP934641 BP934641 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-067_N10.r 3', mRNA sequence
Length = 669
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Minus
Query: 200 acaaagtatattccattctatggaggagcagaataccatgactatcatcattatgtagga 259
||||| ||||||||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 503 acaaaatatattccattttatggtggtgcagactaccatgattaccatcattatgttgga 444
Query: 260 ggccagagccaaagcaattttgcttctgttttcacttactgtgatt 305
|| || ||||| ||||| ||||| || || ||||||||||||||||
Sbjct: 443 ggacaaagccagagcaactttgcatcagtgttcacttactgtgatt 398
>gb|DT517796.1|DT517796 WS02435.B21_F07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_F07 3', mRNA sequence
Length = 768
Score = 91.7 bits (46), Expect = 3e-017
Identities = 91/106 (85%)
Strand = Plus / Minus
Query: 200 acaaagtatattccattctatggaggagcagaataccatgactatcatcattatgtagga 259
||||| ||||||||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 456 acaaaatatattccattttatggtggtgcagactaccatgattaccatcattatgttgga 397
Query: 260 ggccagagccaaagcaattttgcttctgttttcacttactgtgatt 305
|| || ||||| ||||| ||||| || || ||||||||||||||||
Sbjct: 396 ggacaaagccagagcaactttgcatcagtgttcacttactgtgatt 351
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 41 ccatatgcacactgggctga 60
||||||||||||||||||||
Sbjct: 615 ccatatgcacactgggctga 596
>gb|CX658359.1|CX658359 PO01034B11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01034B11 5', mRNA sequence
Length = 464
Score = 83.8 bits (42), Expect = 8e-015
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 200 acaaagtatattccattctatggaggagcagaataccatgactatcatcattatgtagga 259
||||| ||||||||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 11 acaaaatatattccattttatggtggtgcagactaccatgattaccatcattatgttgga 70
Query: 260 ggccagagccaaagcaattttgcttctgttttcacttactgtgatt 305
|| || ||||| ||||| ||||| || || ||||| ||||||||||
Sbjct: 71 ggacaaagccagagcaactttgcatcggtgttcacatactgtgatt 116
>gb|DN489710.1|DN489710 T072G12.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T072G12 3', mRNA sequence
Length = 498
Score = 83.8 bits (42), Expect = 8e-015
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 200 acaaagtatattccattctatggaggagcagaataccatgactatcatcattatgtagga 259
||||| ||||||||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 494 acaaaatatattccattttatggtggtgcagagtaccatgattaccatcattatgttgga 435
Query: 260 ggccagagccaaagcaattttgcttctgttttcacttactgtgatt 305
|| || ||||| ||||| ||||| || || ||||| ||||||||||
Sbjct: 434 ggacaaagccagagcaactttgcatcggtgttcacatactgtgatt 389
>gb|CF236403.1|CF236403 PtaJXT2D1D0107 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 81.8 bits (41), Expect = 3e-014
Identities = 89/105 (84%)
Strand = Plus / Plus
Query: 200 acaaagtatattccattctatggaggagcagaataccatgactatcatcattatgtagga 259
||||| ||||||||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 329 acaaaatatattccattttatggtggtgcagactaccatgattaccatcattatgttgga 388
Query: 260 ggccagagccaaagcaattttgcttctgttttcacttactgtgat 304
|| || ||||| ||||| ||||| || || || ||||||||||||
Sbjct: 389 ggacaaagccagagcaactttgcatcagtgtttacttactgtgat 433
>gb|BP931647.1|BP931647 BP931647 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-025_J02.r 3', mRNA sequence
Length = 519
Score = 79.8 bits (40), Expect = 1e-013
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 206 tatattccattctatggaggagcagaataccatgactatcatcattatgtaggaggccag 265
||||||||||| ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct: 477 tatattccattttatggtggtgcagactaccatgattaccatcattatgttggaggacaa 418
Query: 266 agccaaagcaattttgcttctgttttcacttactgtgatt 305
||||| ||||| ||||| || || ||||| ||||||||||
Sbjct: 417 agccagagcaactttgcatcggtgttcacatactgtgatt 378
>gb|CN522673.1|CN522673 GQ0124.B3_M18 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0124_M18 5', mRNA sequence
Length = 438
Score = 71.9 bits (36), Expect = 3e-011
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 200 acaaagtatattccattctatggaggagcagaataccatgactatcatcattatgtagga 259
||||| ||||||||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 305 acaaaatatattccattttatggtggtgcagactaccatgattaccatcattatgttgga 364
Query: 260 ggccagagccaaagcaattttgcttctgttttcacttactgtgatt 305
|| || ||||| ||||| ||||| || || ||| ||||||||||
Sbjct: 365 ggacaaagccagagcaactttgcatcggtgnncacatactgtgatt 410
>gb|BP934563.1|BP934563 BP934563 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-066_M21.r 3', mRNA sequence
Length = 525
Score = 52.0 bits (26), Expect = 3e-005
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 228 cagaataccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctg 287
|||| |||||||| || ||||||||||| ||||| || ||||| ||||| || || || |
Sbjct: 512 cagactaccatgattaccatcattatgttggaggacaaagccagagcaacttcgcatcgg 453
Query: 288 ttttcacttactgtgatt 305
| ||||| ||||||||||
Sbjct: 452 tgttcacatactgtgatt 435
>gb|DN488487.1|DN488487 S001B09.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S001B09 3', mRNA sequence
Length = 380
Score = 52.0 bits (26), Expect = 3e-005
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 215 ttctatggaggagcagaataccatgactatcatcattatgtaggaggccagagccaaagc 274
||||||||||| ||| |||||||| ||||||||||| ||||| |||| ||||| ||
Sbjct: 355 ttctatggaggtgcaaggtaccatgattatcatcattacgtaggccgccatagccagagt 296
Query: 275 aattttgcttctgttttcacttactgtgattacttatatggcactgacaa 324
|| || ||||| |||||||| | ||||||||| | ||||| || |||||
Sbjct: 295 aacttcgcttccgttttcacagattgtgattacctttatggaacagacaa 246
>gb|CN520588.1|CN520588 GQ0105.B3_E10 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_E10 5', mRNA sequence
Length = 792
Score = 42.1 bits (21), Expect = 0.027
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 95 ccagccattgttccaggccacatgatcacattctggctctggatt 139
||||| || ||||| || |||||||||||||| ||||| ||||||
Sbjct: 673 ccagctatggttcctgggcacatgatcacattttggctttggatt 717
>gb|CV241881.1|CV241881 WS02513.B21_I07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02513_I07 3', mRNA sequence
Length = 748
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 268 ccaaagcaattttgcttctgt 288
|||||||||||||||||||||
Sbjct: 118 ccaaagcaattttgcttctgt 98
>gb|CV245979.1|CV245979 WS0259.B21_O11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0259_O11 3', mRNA sequence
Length = 945
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 268 ccaaagcaattttgcttctgt 288
|||||||||||||||||||||
Sbjct: 116 ccaaagcaattttgcttctgt 96
>gb|DV464349.1|DV464349 MTUNUL1.P26.D03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 775
Score = 38.2 bits (19), Expect = 0.42
Identities = 79/99 (79%)
Strand = Plus / Plus
Query: 41 ccatatgcacactgggctgaggtgctgatactcggcatcccctccttcgtcgggccagcc 100
||||||||||||||||| || || |||| ||||| || || || || | || |||||
Sbjct: 652 ccatatgcacactgggccgaagttttgatcctcggaattccatcttttcttggtccagct 711
Query: 101 attgttccaggccacatgatcacattctggctctggatt 139
|| ||||| || |||||||| ||||| ||||| ||||||
Sbjct: 712 atggttcctgggcacatgatgacattttggctttggatt 750
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,016
Number of Sequences: 369679
Number of extensions: 68016
Number of successful extensions: 19147
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19124
Number of HSP's gapped (non-prelim): 24
length of query: 682
length of database: 203,408,664
effective HSP length: 19
effective length of query: 663
effective length of database: 196,384,763
effective search space: 130203097869
effective search space used: 130203097869
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)