BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.3
(885 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI129170.1|BI129170 G086P80Y Populus cambium cDNA librar... 44 0.009
gb|BU809549.1|BU809549 UL59TB10 Populus leaf cDNA library P... 44 0.009
gb|BU895099.1|BU895099 X019C07 Populus wood cDNA library Po... 44 0.009
gb|CF119485.1|CF119485 MTU10CS.P2.D11 Aspen stem cDNA Libra... 44 0.009
gb|CF227310.1|CF227310 PtaD2B11B1103 Poplar cDNA library fr... 44 0.009
gb|CX178341.1|CX178341 E07_45-60_09.ab1 leaf inoculated wit... 42 0.036
gb|CA823654.1|CA823654 R29D09 two-month-old roots from clon... 40 0.14
>gb|BI129170.1|BI129170 G086P80Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 518
Score = 44.1 bits (22), Expect = 0.009
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 405 ctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 454
||||||||||| ||| || | || ||||||||||||| | ||||||||||
Sbjct: 248 ctcaccggcgaaaaggtccaatcgcccggcgaggagttcgacaaggtgtt 297
>gb|BU809549.1|BU809549 UL59TB10 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 414
Score = 44.1 bits (22), Expect = 0.009
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 405 ctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 454
||||||||||| ||| || | || ||||||||||||| | ||||||||||
Sbjct: 92 ctcaccggcgaaaaggtccaatcgcccggcgaggagttcgacaaggtgtt 141
>gb|BU895099.1|BU895099 X019C07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 379
Score = 44.1 bits (22), Expect = 0.009
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 405 ctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 454
||||||||||| ||| || | || ||||||||||||| | ||||||||||
Sbjct: 207 ctcaccggcgaaaaggtccaatcgcccggcgaggagttcgacaaggtgtt 256
>gb|CF119485.1|CF119485 MTU10CS.P2.D11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 250
Score = 44.1 bits (22), Expect = 0.009
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 405 ctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 454
||||||||||| ||| || | || ||||||||||||| | ||||||||||
Sbjct: 217 ctcaccggcgaaaaggtccaatcgcccggcgaggagttcgacaaggtgtt 168
>gb|CF227310.1|CF227310 PtaD2B11B1103 Poplar cDNA library from wood tissues Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 476
Score = 44.1 bits (22), Expect = 0.009
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 405 ctcaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgtt 454
||||||||||| ||| || | || ||||||||||||| | ||||||||||
Sbjct: 166 ctcaccggcgaaaaggtccaatcgcccggcgaggagttcgacaaggtgtt 215
>gb|CX178341.1|CX178341 E07_45-60_09.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 590 ggaggaggagaagaggaagag 610
|||||||||||||||||||||
Sbjct: 328 ggaggaggagaagaggaagag 308
>gb|CA823654.1|CA823654 R29D09 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 592 aggaggagaagaggaagaggagga 615
||||||||||||||| ||||||||
Sbjct: 128 aggaggagaagaggaggaggagga 151
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,776
Number of Sequences: 369679
Number of extensions: 102776
Number of successful extensions: 31777
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31769
Number of HSP's gapped (non-prelim): 8
length of query: 885
length of database: 203,408,664
effective HSP length: 19
effective length of query: 866
effective length of database: 196,384,763
effective search space: 170069204758
effective search space used: 170069204758
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)