BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.065K11F020919.3.1
(383 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR018980.1|DR018980 STRS1_27_C09.b1_A034 Shoot tip pitch... 50 7e-005
gb|DR012067.1|DR012067 HEAT1_10_A02.b1_A029 Root at 37 C fo... 48 3e-004
gb|DR020210.1|DR020210 STRS1_35_H03.b1_A034 Shoot tip pitch... 48 3e-004
emb|Z46914.1|PSSTS1 P.strobus STS mRNA for stilbene synthas... 48 3e-004
emb|Z46915.1|PSSTS2 P.strobus STS mRNA for stilbene synthas... 48 3e-004
gb|CO158353.1|CO158353 FLD1_6_H04.b1_A029 Root flooded Pinu... 46 0.001
gb|CF385347.1|CF385347 RTDR1_3_H04.b1_A015 Loblolly pine ro... 44 0.004
gb|CF385395.1|CF385395 RTDR1_3_H04.g1_A015 Loblolly pine ro... 44 0.004
gb|CF385903.1|CF385903 RTDR1_7_B02.b1_A015 Loblolly pine ro... 44 0.004
gb|CF385993.1|CF385993 RTDR1_7_B02.g1_A015 Loblolly pine ro... 44 0.004
gb|CF386374.1|CF386374 RTDR1_14_G08.b1_A015 Loblolly pine r... 44 0.004
gb|CF387041.1|CF387041 RTDR1_10_E07.g1_A015 Loblolly pine r... 44 0.004
gb|CF387633.1|CF387633 RTDR1_19_F11.b1_A015 Loblolly pine r... 44 0.004
gb|CF387974.1|CF387974 RTDR1_17_H12.b1_A015 Loblolly pine r... 44 0.004
gb|CF388086.1|CF388086 RTDR2_1_D02.b1_A021 Loblolly pine ro... 44 0.004
gb|CF393298.1|CF393298 RTDR3_20_F06.b1_A022 Loblolly pine r... 44 0.004
gb|CF395847.1|CF395847 RTDS2_17_E03.g1_A021 Drought-stresse... 44 0.004
gb|CF398850.1|CF398850 RTDS3_16_G05.g1_A022 Drought-stresse... 44 0.004
gb|CF398932.1|CF398932 RTDS3_11_E06.b1_A022 Drought-stresse... 44 0.004
gb|CF399950.1|CF399950 RTWW1_2_E03.b1_A015 Well-watered lob... 44 0.004
gb|CF400038.1|CF400038 RTWW1_2_E03.g1_A015 Well-watered lob... 44 0.004
gb|CF400185.1|CF400185 RTWW1_3_D05.g1_A015 Well-watered lob... 44 0.004
gb|CF400395.1|CF400395 RTWW1_5_G04.b1_A015 Well-watered lob... 44 0.004
gb|CF400554.1|CF400554 RTWW1_6_B09.b1_A015 Well-watered lob... 44 0.004
gb|CF400623.1|CF400623 RTWW1_6_B09.g1_A015 Well-watered lob... 44 0.004
gb|CF400955.1|CF400955 RTWW1_9_F08.b1_A015 Well-watered lob... 44 0.004
gb|CF401060.1|CF401060 RTWW1_9_F08.g1_A015 Well-watered lob... 44 0.004
gb|CF401542.1|CF401542 RTWW1_13_B01.b1_A015 Well-watered lo... 44 0.004
gb|CF401556.1|CF401556 RTWW1_13_B01.g1_A015 Well-watered lo... 44 0.004
gb|CF401781.1|CF401781 RTWW1_15_H02.b1_A015 Well-watered lo... 44 0.004
gb|CF401912.1|CF401912 RTWW1_15_H02.g1_A015 Well-watered lo... 44 0.004
gb|CF401949.1|CF401949 RTWW1_16_F02.b1_A015 Well-watered lo... 44 0.004
gb|CF402054.1|CF402054 RTWW1_16_F02.g1_A015 Well-watered lo... 44 0.004
gb|CF402100.1|CF402100 RTWW1_20_F06.b1_A015 Well-watered lo... 44 0.004
gb|CF402632.1|CF402632 RTWW1_21_E04.g1_A015 Well-watered lo... 44 0.004
gb|CF403010.1|CF403010 RTWW1_24_G07.b1_A015 Well-watered lo... 44 0.004
gb|CF470312.1|CF470312 RTDS1_18_G08.g1_A015 Drought-stresse... 44 0.004
gb|CF470546.1|CF470546 RTDS1_13_A03.b1_A015 Drought-stresse... 44 0.004
gb|CF470610.1|CF470610 RTDS1_13_A03.g1_A015 Drought-stresse... 44 0.004
gb|CF470855.1|CF470855 RTDS1_15_A07.b1_A015 Drought-stresse... 44 0.004
gb|CF470987.1|CF470987 RTDS1_15_A07.g1_A015 Drought-stresse... 44 0.004
gb|CF471843.1|CF471843 RTDS1_7_A05.b1_A015 Drought-stressed... 44 0.004
gb|CF472163.1|CF472163 RTDS1_5_H03.b1_A015 Drought-stressed... 44 0.004
gb|CF472484.1|CF472484 RTDS1_10_C06.b1_A015 Drought-stresse... 44 0.004
gb|CF473098.1|CF473098 RTDS1_1_G03.g1_A015 Drought-stressed... 44 0.004
gb|CF473840.1|CF473840 RTWW2_19_F02.b1_A021 Well-watered lo... 44 0.004
gb|CF475140.1|CF475140 RTWW2_14_H04.b1_A021 Well-watered lo... 44 0.004
gb|CF475178.1|CF475178 RTWW2_14_D10.g1_A021 Well-watered lo... 44 0.004
gb|CF475182.1|CF475182 RTWW2_14_H04.g1_A021 Well-watered lo... 44 0.004
gb|CF475610.1|CF475610 RTWW2_11_B06.b1_A021 Well-watered lo... 44 0.004
gb|CF475989.1|CF475989 RTWW2_16_G11.b1_A021 Well-watered lo... 44 0.004
gb|CF476417.1|CF476417 RTWW3_1_G10.b1_A022 Well-watered lob... 44 0.004
gb|CF477300.1|CF477300 RTWW3_7_G04.b1_A022 Well-watered lob... 44 0.004
gb|CF479458.1|CF479458 RTWW3_22_A11.b1_A022 Well-watered lo... 44 0.004
gb|CF663341.1|CF663341 RTCNT1_2_F10.b1_A029 Root control Pi... 44 0.004
gb|CF664527.1|CF664527 RTCNT1_10_H10.b1_A029 Root control P... 44 0.004
gb|CF664610.1|CF664610 RTCNT1_10_H10.g1_A029 Root control P... 44 0.004
gb|CF672212.1|CF672212 RTCNT1_62_C11.b1_A029 Root control P... 44 0.004
gb|CF672788.1|CF672788 RTCNT1_74_A03.b1_A029 Root control P... 44 0.004
gb|CF672803.1|CF672803 RTCNT1_74_C01.b1_A029 Root control P... 44 0.004
gb|BX678760.1|BX678760 BX678760 RS Pinus pinaster cDNA clon... 44 0.004
gb|CO168723.1|CO168723 NDL1_2_C09.b1_A029 Needles control P... 44 0.004
gb|CO175360.1|CO175360 NDL1_54_E09.b1_A029 Needles control ... 44 0.004
gb|CO175481.1|CO175481 NDL1_55_B10.b1_A029 Needles control ... 44 0.004
gb|CO175643.1|CO175643 NDL1_56_C02.b1_A029 Needles control ... 44 0.004
gb|CO175720.1|CO175720 NDL1_56_C02.g1_A029 Needles control ... 44 0.004
gb|CO199006.1|CO199006 GEO1_18_D04.b1_A029 Root gravitropis... 44 0.004
gb|CO199948.1|CO199948 GEO2_4_B08.g1_A032 Root gravitropism... 44 0.004
gb|CO200026.1|CO200026 GEO2_5_A12.b1_A032 Root gravitropism... 44 0.004
gb|CO200405.1|CO200405 GEO2_7_F08.b1_A032 Root gravitropism... 44 0.004
gb|CO200488.1|CO200488 GEO2_7_F08.g1_A032 Root gravitropism... 44 0.004
gb|CO364251.1|CO364251 RTK1_14_D03.g1_A029 Roots minus pota... 44 0.004
gb|CO367152.1|CO367152 RTK1_32_B10.g1_A029 Roots minus pota... 44 0.004
gb|CO368990.1|CO368990 RTK1_44_E11.b1_A029 Roots minus pota... 44 0.004
gb|CV033525.1|CV033525 RTNACL1_35_C05.b1_A029 Roots plus ad... 44 0.004
gb|CV034704.1|CV034704 RTNACL1_11_B09.b1_A029 Roots plus ad... 44 0.004
gb|CV034714.1|CV034714 RTNACL1_11_C09.b1_A029 Roots plus ad... 44 0.004
gb|CV034775.1|CV034775 RTNACL1_11_B09.g1_A029 Roots plus ad... 44 0.004
gb|CV034785.1|CV034785 RTNACL1_11_C09.g1_A029 Roots plus ad... 44 0.004
gb|CX645965.1|CX645965 COLD1_6_H12.b1_A029 Root cold Pinus ... 44 0.004
gb|CX646506.1|CX646506 COLD1_9_F09.g1_A029 Root cold Pinus ... 44 0.004
gb|CX647687.1|CX647687 COLD1_19_F04.b1_A029 Root cold Pinus... 44 0.004
gb|CX648463.1|CX648463 COLD1_28_G02.g1_A029 Root cold Pinus... 44 0.004
gb|CX650383.1|CX650383 COLD1_45_G04.b1_A029 Root cold Pinus... 44 0.004
gb|CX651191.1|CX651191 COLD1_50_F08.g1_A029 Root cold Pinus... 44 0.004
gb|CX712942.1|CX712942 RTPQ1_5_H03.g1_A032 Roots treated wi... 44 0.004
gb|CX713195.1|CX713195 RTPQ1_7_C10.g1_A032 Roots treated wi... 44 0.004
gb|DR011347.1|DR011347 HEAT1_5_E01.b1_A029 Root at 37 C for... 44 0.004
gb|DR011427.1|DR011427 HEAT1_5_E01.g1_A029 Root at 37 C for... 44 0.004
gb|DR016807.1|DR016807 STRS1_12_G04.b1_A034 Shoot tip pitch... 44 0.004
gb|DR016894.1|DR016894 STRS1_12_G04.g1_A034 Shoot tip pitch... 44 0.004
gb|DR016936.1|DR016936 STRS1_13_C03.b1_A034 Shoot tip pitch... 44 0.004
gb|DR016962.1|DR016962 STRS1_13_E11.b1_A034 Shoot tip pitch... 44 0.004
gb|DR018309.1|DR018309 STRS1_22_B03.b1_A034 Shoot tip pitch... 44 0.004
gb|DR018441.1|DR018441 STRS1_23_B07.b1_A034 Shoot tip pitch... 44 0.004
gb|DR020352.1|DR020352 STRS1_36_H02.b1_A034 Shoot tip pitch... 44 0.004
gb|DR020422.1|DR020422 STRS1_36_H02.g1_A034 Shoot tip pitch... 44 0.004
gb|DR020598.1|DR020598 STRS1_38_C04.b1_A034 Shoot tip pitch... 44 0.004
gb|DR020802.1|DR020802 STRS1_39_H07.b1_A034 Shoot tip pitch... 44 0.004
gb|DR023197.1|DR023197 STRS1_56_C09.b1_A034 Shoot tip pitch... 44 0.004
gb|DR025552.1|DR025552 STRS1_72_G04.b1_A034 Shoot tip pitch... 44 0.004
gb|DR025554.1|DR025554 STRS1_72_G09.b1_A034 Shoot tip pitch... 44 0.004
gb|DR025633.1|DR025633 STRS1_72_G04.g1_A034 Shoot tip pitch... 44 0.004
gb|DR050671.1|DR050671 RTBOR1_25_B01.b1_A029 Roots plus add... 44 0.004
gb|DR052034.1|DR052034 RTCA1_2_B04.b1_A029 Roots minus calc... 44 0.004
gb|DR053956.1|DR053956 RTCA1_14_H05.b1_A029 Roots minus cal... 44 0.004
gb|DR054043.1|DR054043 RTCA1_14_H05.g1_A029 Roots minus cal... 44 0.004
gb|DR056630.1|DR056630 RTCA1_31_C02.g1_A029 Roots minus cal... 44 0.004
gb|DR058239.1|DR058239 RTNIT1_10_D05.g1_A029 Roots minus ni... 44 0.004
gb|DR059495.1|DR059495 RTNIT1_18_B12.b1_A029 Roots minus ni... 44 0.004
gb|DR060305.1|DR060305 RTNIT1_27_B09.b1_A029 Roots minus ni... 44 0.004
gb|DR069747.1|DR069747 RTDK1_9_E04.b1_A029 Roots, dark Pinu... 44 0.004
gb|DR070601.1|DR070601 RTDK1_14_H08.b1_A029 Roots, dark Pin... 44 0.004
gb|DR070981.1|DR070981 RTDK1_16_G04.g1_A029 Roots, dark Pin... 44 0.004
gb|DR072008.1|DR072008 RTDK1_23_B04.g1_A029 Roots, dark Pin... 44 0.004
gb|DR081523.1|DR081523 RTFEPL1_30_G02.b1_A029 Roots plus ad... 44 0.004
gb|DR081635.1|DR081635 RTFEPL1_31_C09.b1_A029 Roots plus ad... 44 0.004
gb|DR090599.1|DR090599 RTAL1_16_E02.b1_A029 Roots plus adde... 44 0.004
gb|DR090673.1|DR090673 RTAL1_16_E02.g1_A029 Roots plus adde... 44 0.004
gb|DR090967.1|DR090967 RTAL1_18_B09.g1_A029 Roots plus adde... 44 0.004
gb|DR092086.1|DR092086 RTAL1_26_E09.b1_A029 Roots plus adde... 44 0.004
gb|DR093504.1|DR093504 STRR1_8_D11.g1_A033 Stem Response Re... 44 0.004
gb|DR094563.1|DR094563 STRR1_15_H02.b1_A033 Stem Response R... 44 0.004
gb|DR094589.1|DR094589 STRR1_15_B10.g1_A033 Stem Response R... 44 0.004
gb|DR098413.1|DR098413 STRR1_45_G09.b1_A033 Stem Response R... 44 0.004
gb|DR098592.1|DR098592 STRR1_46_C12.g1_A033 Stem Response R... 44 0.004
gb|DR099050.1|DR099050 STRR1_52_F06.b1_A033 Stem Response R... 44 0.004
gb|DR101386.1|DR101386 STRR1_72_D05.g1_A033 Stem Response R... 44 0.004
gb|DR101679.1|DR101679 STRR1_75_B10.b1_A033 Stem Response R... 44 0.004
gb|DR111212.1|DR111212 RTS1_16_D02.b1_A029 Roots minus sulf... 44 0.004
gb|DR166175.1|DR166175 RTPHOS1_10_A12.b2_A029 Roots minus p... 44 0.004
gb|DR179882.1|DR179882 RTMNUT1_25_D03.b1_A029 Roots minus m... 44 0.004
gb|DR384402.1|DR384402 RTHG1_2_B06.b1_A029 Roots plus added... 44 0.004
gb|DR384476.1|DR384476 RTHG1_2_B06.g1_A029 Roots plus added... 44 0.004
gb|DR385645.1|DR385645 RTHG1_10_A04.b1_A029 Roots plus adde... 44 0.004
gb|DR743963.1|DR743963 RTCU1_19_G05.b1_A029 Roots plus adde... 44 0.004
gb|DR746092.1|DR746092 RTCU1_34_E01.g1_A029 Roots plus adde... 44 0.004
emb|X60754.1|PSCHS P.sylvestris CHS gene for chalcone synthase 44 0.004
gb|DR022433.1|DR022433 STRS1_51_B08.b1_A034 Shoot tip pitch... 42 0.016
gb|DR094531.1|DR094531 STRR1_15_D10.b1_A033 Stem Response R... 42 0.016
gb|DR094612.1|DR094612 STRR1_15_D10.g1_A033 Stem Response R... 42 0.016
gb|BX678921.1|BX678921 BX678921 RS Pinus pinaster cDNA clon... 40 0.064
gb|AL750083.1|AL750083 AL750083 AS Pinus pinaster cDNA clon... 38 0.25
>gb|DR018980.1|DR018980 STRS1_27_C09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_C09_A034 3', mRNA sequence
Length = 423
Score = 50.1 bits (25), Expect = 7e-005
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 13 ctcttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
|||||||| ||||| |||||||||||||| || ||||||||
Sbjct: 148 ctcttcggattcgggccgggcctcaccgtggaaaccgtcgt 188
>gb|DR012067.1|DR012067 HEAT1_10_A02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA
clone HEAT1_10_A02_A029 3', mRNA sequence
Length = 347
Score = 48.1 bits (24), Expect = 3e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccacagcgtccccat 71
||||| ||||| |||||||||||||| || |||||||| ||| | ||||| |||||
Sbjct: 11 ttcggattcgggccgggcctcaccgtggaaaccgtcgtcctcaagagcgttcccat 66
>gb|DR020210.1|DR020210 STRS1_35_H03.b1_A034 Shoot tip pitch canker susceptible Pinus
taeda cDNA clone STRS1_35_H03_A034 3', mRNA sequence
Length = 394
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 22 ttcggcccgggcctcaccgtcgagaccgtcgt 53
|||||||||||||||||||| || ||||||||
Sbjct: 60 ttcggcccgggcctcaccgtggaaaccgtcgt 91
>emb|Z46914.1|PSSTS1 P.strobus STS mRNA for stilbene synthase (1411 bp)
Length = 1411
Score = 48.1 bits (24), Expect = 3e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 10 gtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
|||||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 1147 gtcctctttggattcgggccgggcctcaccgtcgaaacagtcgt 1190
>emb|Z46915.1|PSSTS2 P.strobus STS mRNA for stilbene synthase (1470 bp)
Length = 1470
Score = 48.1 bits (24), Expect = 3e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 10 gtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
|||||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 1185 gtcctctttggattcgggccgggcctcaccgtcgaaacagtcgt 1228
>gb|CO158353.1|CO158353 FLD1_6_H04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_6_H04_A029 3', mRNA sequence
Length = 628
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 19 ggtttcggcccgggcctcaccgtcgagaccgtcgt 53
|||||||| ||||| ||||||||||| ||||||||
Sbjct: 311 ggtttcgggccgggtctcaccgtcgaaaccgtcgt 345
>gb|CF385347.1|CF385347 RTDR1_3_H04.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_3_H04_A015 3', mRNA
sequence
Length = 500
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 270 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 233
>gb|CF385395.1|CF385395 RTDR1_3_H04.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_3_H04_A015 5', mRNA
sequence
Length = 459
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 228 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 191
>gb|CF385903.1|CF385903 RTDR1_7_B02.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_7_B02_A015 3', mRNA
sequence
Length = 501
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 69 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 106
>gb|CF385993.1|CF385993 RTDR1_7_B02.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_7_B02_A015 5', mRNA
sequence
Length = 787
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 641 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 678
>gb|CF386374.1|CF386374 RTDR1_14_G08.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_14_G08_A015 3', mRNA
sequence
Length = 502
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 309 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 346
>gb|CF387041.1|CF387041 RTDR1_10_E07.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_10_E07_A015 5', mRNA
sequence
Length = 658
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 240 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 203
>gb|CF387633.1|CF387633 RTDR1_19_F11.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_19_F11_A015 3', mRNA
sequence
Length = 571
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 308 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 345
>gb|CF387974.1|CF387974 RTDR1_17_H12.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_17_H12_A015 3', mRNA
sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 232 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 269
>gb|CF388086.1|CF388086 RTDR2_1_D02.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_D02_A021 3', mRNA
sequence
Length = 465
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 198 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 235
>gb|CF393298.1|CF393298 RTDR3_20_F06.b1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_20_F06_A022 3', mRNA
sequence
Length = 529
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 313 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 350
>gb|CF395847.1|CF395847 RTDS2_17_E03.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_17_E03_A021 5', mRNA sequence
Length = 661
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 373 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 410
>gb|CF398850.1|CF398850 RTDS3_16_G05.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_16_G05_A022 5', mRNA sequence
Length = 442
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 267 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 230
>gb|CF398932.1|CF398932 RTDS3_11_E06.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_11_E06_A022 3', mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 252 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 289
>gb|CF399950.1|CF399950 RTWW1_2_E03.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_E03_A015 3', mRNA sequence
Length = 600
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 263 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 300
>gb|CF400038.1|CF400038 RTWW1_2_E03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_E03_A015 5', mRNA sequence
Length = 719
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 569 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 606
>gb|CF400185.1|CF400185 RTWW1_3_D05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_3_D05_A015 5', mRNA sequence
Length = 779
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 554 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 591
>gb|CF400395.1|CF400395 RTWW1_5_G04.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_G04_A015 3', mRNA sequence
Length = 531
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 194 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 231
>gb|CF400554.1|CF400554 RTWW1_6_B09.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_6_B09_A015 3', mRNA sequence
Length = 486
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 27 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 64
>gb|CF400623.1|CF400623 RTWW1_6_B09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_6_B09_A015 5', mRNA sequence
Length = 767
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 524 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 561
>gb|CF400955.1|CF400955 RTWW1_9_F08.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_9_F08_A015 3', mRNA sequence
Length = 612
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 308 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 345
>gb|CF401060.1|CF401060 RTWW1_9_F08.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_9_F08_A015 5', mRNA sequence
Length = 684
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 532 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 569
>gb|CF401542.1|CF401542 RTWW1_13_B01.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_13_B01_A015 3', mRNA sequence
Length = 569
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 197 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 234
>gb|CF401556.1|CF401556 RTWW1_13_B01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_13_B01_A015 5', mRNA sequence
Length = 706
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 554 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 591
>gb|CF401781.1|CF401781 RTWW1_15_H02.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_15_H02_A015 3', mRNA sequence
Length = 551
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 182 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 219
>gb|CF401912.1|CF401912 RTWW1_15_H02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_15_H02_A015 5', mRNA sequence
Length = 721
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 570 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 607
>gb|CF401949.1|CF401949 RTWW1_16_F02.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_F02_A015 3', mRNA sequence
Length = 595
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 152 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 189
>gb|CF402054.1|CF402054 RTWW1_16_F02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_F02_A015 5', mRNA sequence
Length = 722
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 452 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 489
>gb|CF402100.1|CF402100 RTWW1_20_F06.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_20_F06_A015 3', mRNA sequence
Length = 687
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 466 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 503
>gb|CF402632.1|CF402632 RTWW1_21_E04.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_E04_A015 5', mRNA sequence
Length = 828
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 687 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 724
>gb|CF403010.1|CF403010 RTWW1_24_G07.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_24_G07_A015 3', mRNA sequence
Length = 630
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 422 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 459
>gb|CF470312.1|CF470312 RTDS1_18_G08.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_18_G08_A015 5', mRNA sequence
Length = 769
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 568 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 605
>gb|CF470546.1|CF470546 RTDS1_13_A03.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_A03_A015 3', mRNA sequence
Length = 464
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 89 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 126
>gb|CF470610.1|CF470610 RTDS1_13_A03.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_A03_A015 5', mRNA sequence
Length = 485
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 89 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 126
>gb|CF470855.1|CF470855 RTDS1_15_A07.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_A07_A015 3', mRNA sequence
Length = 547
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 275 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 312
>gb|CF470987.1|CF470987 RTDS1_15_A07.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_15_A07_A015 5', mRNA sequence
Length = 668
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 376 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 413
>gb|CF471843.1|CF471843 RTDS1_7_A05.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_7_A05_A015 3', mRNA sequence
Length = 625
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 285 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 322
>gb|CF472163.1|CF472163 RTDS1_5_H03.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_5_H03_A015 3', mRNA sequence
Length = 559
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 366 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 403
>gb|CF472484.1|CF472484 RTDS1_10_C06.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_10_C06_A015 3', mRNA sequence
Length = 542
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 170 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 207
>gb|CF473098.1|CF473098 RTDS1_1_G03.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_1_G03_A015 5', mRNA sequence
Length = 579
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 272 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 235
>gb|CF473840.1|CF473840 RTWW2_19_F02.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_19_F02_A021 3', mRNA sequence
Length = 576
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 232 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 269
>gb|CF475140.1|CF475140 RTWW2_14_H04.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_14_H04_A021 3', mRNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 188 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 225
>gb|CF475178.1|CF475178 RTWW2_14_D10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_14_D10_A021 5', mRNA sequence
Length = 712
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 565 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 602
>gb|CF475182.1|CF475182 RTWW2_14_H04.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_14_H04_A021 5', mRNA sequence
Length = 740
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 528 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 565
>gb|CF475610.1|CF475610 RTWW2_11_B06.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_B06_A021 3', mRNA sequence
Length = 552
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ttcggtttcggcccgggcctcaccgtcgagaccgtcgt 53
||||| ||||| |||||||||||||| || ||||||||
Sbjct: 285 ttcggattcgggccgggcctcaccgtggaaaccgtcgt 322
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,950
Number of Sequences: 355925
Number of extensions: 30950
Number of successful extensions: 8743
Number of sequences better than 0.5: 143
Number of HSP's better than 0.5 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8600
Number of HSP's gapped (non-prelim): 143
length of query: 383
length of database: 217,277,237
effective HSP length: 18
effective length of query: 365
effective length of database: 210,870,587
effective search space: 76967764255
effective search space used: 76967764255
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)