BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064G21F020918.3.1
(705 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF220584.1|BF220584 NXCI_149_B01_F NXCI (Nsf Xylem Compr... 40 0.12
gb|DT628770.1|DT628770 EST1155340 Subtracted pine embryo li... 40 0.12
>gb|BF220584.1|BF220584 NXCI_149_B01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_149_B01 5' similar to Arabidopsis
thaliana sequence At2g35530 bZIP transcription factor
AtbZip16 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 397
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 664 tgatgcctccttatgggacaccaccaccatat 695
||||||| ||||||||||| |||| |||||||
Sbjct: 168 tgatgccaccttatgggactccactaccatat 199
>gb|DT628770.1|DT628770 EST1155340 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD180 5' end, mRNA sequence
Length = 906
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 664 tgatgcctccttatgggacaccaccaccatat 695
||||||| ||||||||||| |||| |||||||
Sbjct: 472 tgatgccaccttatgggactccactaccatat 503
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,874
Number of Sequences: 355925
Number of extensions: 102874
Number of successful extensions: 24908
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24904
Number of HSP's gapped (non-prelim): 4
length of query: 705
length of database: 217,277,237
effective HSP length: 19
effective length of query: 686
effective length of database: 210,514,662
effective search space: 144413058132
effective search space used: 144413058132
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)