BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= M73028.2.1
(1802 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF665728.1|CF665728 RTCNT1_18_C05.b1_A029 Root control P... 72 9e-011
gb|CF669490.1|CF669490 RTCNT1_44_A10.b1_A029 Root control P... 72 9e-011
gb|DR023047.1|DR023047 STRS1_55_D09.b1_A034 Shoot tip pitch... 72 9e-011
gb|DR079868.1|DR079868 RTFEPL1_18_F11.b1_A029 Roots plus ad... 72 9e-011
gb|DR079932.1|DR079932 RTFEPL1_18_F11.g1_A029 Roots plus ad... 72 9e-011
gb|CO175228.1|CO175228 NDL1_53_H05.b1_A029 Needles control ... 66 5e-009
gb|CO361899.1|CO361899 NDL2_7_G04.g1_A029 Needles control 2... 66 5e-009
gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip libra... 62 8e-008
gb|CO170303.1|CO170303 NDL1_13_D05.b1_A029 Needles control ... 62 8e-008
gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus ni... 62 8e-008
gb|DR098778.1|DR098778 STRR1_47_G01.g1_A033 Stem Response R... 62 8e-008
gb|CF396247.1|CF396247 RTDS2_15_B11.g1_A021 Drought-stresse... 60 3e-007
gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control ... 60 3e-007
gb|CX646566.1|CX646566 COLD1_10_D06.b1_A029 Root cold Pinus... 60 3e-007
gb|DR744198.1|DR744198 RTCU1_20_G08.g1_A029 Roots plus adde... 60 3e-007
gb|CF386912.1|CF386912 RTDR1_9_D07.g1_A015 Loblolly pine ro... 58 1e-006
gb|CF474496.1|CF474496 RTWW2_9_D02.b1_A021 Well-watered lob... 58 1e-006
gb|CF476017.1|CF476017 RTWW2_16_B11.g1_A021 Well-watered lo... 58 1e-006
gb|CF663743.1|CF663743 RTCNT1_4_H05.g1_A029 Root control Pi... 58 1e-006
gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control P... 58 1e-006
gb|CF669684.1|CF669684 RTCNT1_45_A07.g1_A029 Root control P... 58 1e-006
gb|CF672556.1|CF672556 RTCNT1_64_A03.g1_A029 Root control P... 58 1e-006
gb|CO364221.1|CO364221 RTK1_14_A05.g1_A029 Roots minus pota... 58 1e-006
gb|CO366361.1|CO366361 RTK1_27_A03.g1_A029 Roots minus pota... 58 1e-006
gb|CV139163.1|CV139163 EST850372 Sequencing ESTs from loblo... 58 1e-006
gb|DR011876.1|DR011876 HEAT1_8_B02.g1_A029 Root at 37 C for... 58 1e-006
gb|DR013838.1|DR013838 HEAT1_21_G09.g1_A029 Root at 37 C fo... 58 1e-006
gb|DR024798.1|DR024798 STRS1_67_B12.g1_A034 Shoot tip pitch... 58 1e-006
gb|DR024941.1|DR024941 STRS1_68_B11.g1_A034 Shoot tip pitch... 58 1e-006
gb|DR050127.1|DR050127 RTBOR1_21_A09.g1_A029 Roots plus add... 58 1e-006
gb|DR089099.1|DR089099 RTAL1_6_B11.g1_A029 Roots plus added... 58 1e-006
gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfu... 58 1e-006
gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron... 58 1e-006
gb|DR162691.1|DR162691 RTFE1_19_C08.g1_A029 Roots minus iro... 58 1e-006
gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo li... 58 1e-006
gb|DT626587.1|DT626587 EST1158511 Sequencing ESTs from lobl... 58 1e-006
gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo li... 58 1e-006
gb|AW065064.1|AW065064 ST39B10 Pine TriplEx shoot tip libra... 56 5e-006
gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine ro... 56 5e-006
gb|AW064634.1|AW064634 ST33H05 Pine TriplEx shoot tip libra... 54 2e-005
gb|CF393225.1|CF393225 RTDR3_17_D12.g1_A022 Loblolly pine r... 54 2e-005
gb|CF396127.1|CF396127 RTDS2_13_D06.g1_A021 Drought-stresse... 54 2e-005
gb|CF472757.1|CF472757 RTDS1_11_D09.g1_A015 Drought-stresse... 54 2e-005
gb|CF478238.1|CF478238 RTWW3_19_H07.g1_A022 Well-watered lo... 54 2e-005
gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus pota... 54 2e-005
gb|CO367106.1|CO367106 RTK1_32_E03.b1_A029 Roots minus pota... 54 2e-005
gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus pota... 54 2e-005
gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for... 54 2e-005
gb|DR014845.1|DR014845 HEAT1_52_A11.b1_A029 Root at 37 C fo... 54 2e-005
gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C fo... 54 2e-005
gb|DR015213.1|DR015213 STRS1_2_D10.b1_A034 Shoot tip pitch ... 54 2e-005
gb|DR015297.1|DR015297 STRS1_2_D10.g1_A034 Shoot tip pitch ... 54 2e-005
gb|DR023090.1|DR023090 STRS1_55_A05.g1_A034 Shoot tip pitch... 54 2e-005
gb|DR059765.1|DR059765 RTNIT1_19_D08.g1_A029 Roots minus ni... 54 2e-005
gb|DR099264.1|DR099264 STRR1_54_G08.b1_A033 Stem Response R... 54 2e-005
gb|DR099337.1|DR099337 STRR1_54_G08.g1_A033 Stem Response R... 54 2e-005
gb|DR161362.1|DR161362 RTFE1_11_H03.b1_A029 Roots minus iro... 54 2e-005
gb|DR161451.1|DR161451 RTFE1_11_H03.g1_A029 Roots minus iro... 54 2e-005
gb|CF391408.1|CF391408 RTDR3_1_E10.g1_A022 Loblolly pine ro... 52 8e-005
gb|CF394327.1|CF394327 RTDS2_4_B08.g1_A021 Drought-stressed... 52 8e-005
gb|CF395727.1|CF395727 RTDS2_16_B07.g1_A021 Drought-stresse... 52 8e-005
gb|CF397272.1|CF397272 RTDS3_2_C01.g1_A022 Drought-stressed... 52 8e-005
gb|CO173249.1|CO173249 NDL1_35_A08.b1_A029 Needles control ... 52 8e-005
gb|CO173319.1|CO173319 NDL1_35_A08.g1_A029 Needles control ... 52 8e-005
gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 ... 52 8e-005
gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2... 52 8e-005
gb|DR020641.1|DR020641 STRS1_38_G12.b1_A034 Shoot tip pitch... 52 8e-005
gb|DR020720.1|DR020720 STRS1_38_G12.g1_A034 Shoot tip pitch... 52 8e-005
gb|DR051127.1|DR051127 RTBOR1_27_G08.g1_A029 Roots plus add... 52 8e-005
gb|DR167833.1|DR167833 RTPHOS1_21_A06.g1_A029 Roots minus p... 52 8e-005
gb|CF667292.1|CF667292 RTCNT1_29_G02.b1_A029 Root control P... 50 3e-004
gb|CO165016.1|CO165016 FLD1_51_F09.g1_A029 Root flooded Pin... 50 3e-004
gb|CO173370.1|CO173370 NDL1_35_F03.g1_A029 Needles control ... 50 3e-004
gb|CO361678.1|CO361678 NDL2_6_H01.b1_A029 Needles control 2... 50 3e-004
gb|CO361758.1|CO361758 NDL2_6_H01.g1_A029 Needles control 2... 50 3e-004
gb|CO368639.1|CO368639 RTK1_41_H02.g1_A029 Roots minus pota... 50 3e-004
gb|CX647457.1|CX647457 COLD1_16_B04.g1_A029 Root cold Pinus... 50 3e-004
gb|DR059561.1|DR059561 RTNIT1_18_A02.g1_A029 Roots minus ni... 50 3e-004
gb|DR081462.1|DR081462 RTFEPL1_29_G04.g1_A029 Roots plus ad... 50 3e-004
gb|DR101544.1|DR101544 STRR1_74_C02.b1_A033 Stem Response R... 50 3e-004
gb|DR101609.1|DR101609 STRR1_74_C02.g1_A033 Stem Response R... 50 3e-004
gb|DR111301.1|DR111301 RTS1_16_F03.g1_A029 Roots minus sulf... 50 3e-004
gb|DR686108.1|DR686108 EST1076186 Normalized pine embryo li... 50 3e-004
gb|DR744906.1|DR744906 RTCU1_25_E06.g1_A029 Roots plus adde... 50 3e-004
gb|DT633531.1|DT633531 EST1148462 Normalized pine embryo li... 50 3e-004
gb|DR101912.1|DR101912 STRR1_76_E01.g1_A033 Stem Response R... 48 0.001
gb|DR120011.1|DR120011 RTMG1_27_A10.b1_A029 Roots minus mag... 48 0.001
gb|DR120088.1|DR120088 RTMG1_27_A10.g2_A029 Roots minus mag... 48 0.001
gb|DR167401.1|DR167401 RTPHOS1_18_C09.g1_A029 Roots minus p... 48 0.001
gb|DR683147.1|DR683147 EST1073223 Normalized pine embryo li... 48 0.001
gb|DT631233.1|DT631233 EST1146164 Normalized pine embryo li... 48 0.001
gb|AW064812.1|AW064812 ST36A12 Pine TriplEx shoot tip libra... 46 0.005
gb|BQ701199.1|BQ701199 NXSI_023_G01_F NXSI (Nsf Xylem Side ... 46 0.005
gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine ro... 46 0.005
gb|CF387233.1|CF387233 RTDR1_11_B07.g1_A015 Loblolly pine r... 46 0.005
gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine ro... 46 0.005
gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine r... 46 0.005
gb|CF391868.1|CF391868 RTDR3_10_B04.g1_A022 Loblolly pine r... 46 0.005
gb|CF393923.1|CF393923 RTDS2_2_G07.b1_A021 Drought-stressed... 46 0.005
gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered lob... 46 0.005
gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered lo... 46 0.005
gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered lo... 46 0.005
gb|BX679906.1|BX679906 BX679906 RS Pinus pinaster cDNA clon... 46 0.005
gb|BX680288.1|BX680288 BX680288 RS Pinus pinaster cDNA clon... 46 0.005
gb|CN852309.1|CN852309 Pi148-1 Salicylate-treated slash pin... 46 0.005
gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pin... 46 0.005
gb|CO162486.1|CO162486 FLD1_35_D02.g1_A029 Root flooded Pin... 46 0.005
gb|CO164694.1|CO164694 FLD1_49_E04.g1_A029 Root flooded Pin... 46 0.005
gb|CO367346.1|CO367346 RTK1_33_F05.g1_A029 Roots minus pota... 46 0.005
gb|CV034016.1|CV034016 RTNACL1_38_B11.b1_A029 Roots plus ad... 46 0.005
gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus ad... 46 0.005
gb|CX646534.1|CX646534 COLD1_10_A05.b1_A029 Root cold Pinus... 46 0.005
gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus... 46 0.005
gb|CX648339.1|CX648339 COLD1_28_B12.b1_A029 Root cold Pinus... 46 0.005
gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus... 46 0.005
gb|DR052727.1|DR052727 RTCA1_6_B03.g1_A029 Roots minus calc... 46 0.005
gb|DR057870.1|DR057870 RTNIT1_8_G05.b1_A029 Roots minus nit... 46 0.005
gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nit... 46 0.005
gb|DR069928.1|DR069928 RTDK1_10_F06.b1_A029 Roots, dark Pin... 46 0.005
gb|DR072123.1|DR072123 RTDK1_24_F01.b1_A029 Roots, dark Pin... 46 0.005
gb|DR094442.1|DR094442 STRR1_14_D03.g1_A033 Stem Response R... 46 0.005
gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulf... 46 0.005
gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magn... 46 0.005
gb|DR117421.1|DR117421 RTMG1_6_G12.g1_A029 Roots minus magn... 46 0.005
gb|DR117678.1|DR117678 RTMG1_8_A10.g1_A029 Roots minus magn... 46 0.005
gb|DR117679.1|DR117679 RTMG1_8_A11.g1_A029 Roots minus magn... 46 0.005
gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iro... 46 0.005
gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iro... 46 0.005
gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus p... 46 0.005
gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus m... 46 0.005
gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus m... 46 0.005
gb|DR386158.1|DR386158 RTHG1_13_G03.b1_A029 Roots plus adde... 46 0.005
gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus adde... 46 0.005
gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus adde... 46 0.005
gb|BX250447.1|BX250447 BX250447 Pinus pinaster differenciat... 44 0.020
gb|BE451890.1|BE451890 NXCI_004_G10_F NXCI (Nsf Xylem Compr... 44 0.020
gb|BF186052.1|BF186052 NXCI_132_E09_F NXCI (Nsf Xylem Compr... 44 0.020
gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side ... 44 0.020
gb|CD016573.1|CD016573 NXCI_051_A04_F NXCI (Nsf Xylem Compr... 44 0.020
gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine r... 44 0.020
gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine ro... 44 0.020
gb|CF399612.1|CF399612 RTDS3_26_H01.g1_A022 Drought-stresse... 44 0.020
gb|CF401126.1|CF401126 RTWW1_10_H02.b1_A015 Well-watered lo... 44 0.020
gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clon... 44 0.020
gb|CN783895.1|CN783895 EST782586 Sequencing ESTs from loblo... 44 0.020
gb|CO200971.1|CO200971 RTCNT2_2_F10.g1_A029 Root control 2 ... 44 0.020
gb|CO411548.1|CO411548 EST841933 Sequencing ESTs from loblo... 44 0.020
gb|CO412408.1|CO412408 EST842793 Sequencing ESTs from loblo... 44 0.020
gb|CO414624.1|CO414624 EST845009 Sequencing ESTs from loblo... 44 0.020
gb|CO362169.1|CO362169 RTK1_1_F07.g1_A029 Roots minus potas... 44 0.020
gb|CO368386.1|CO368386 RTK1_40_G08.b1_A029 Roots minus pota... 44 0.020
gb|CV135175.1|CV135175 EST846384 Sequencing ESTs from loblo... 44 0.020
gb|CV136199.1|CV136199 EST847408 Sequencing ESTs from loblo... 44 0.020
gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus... 44 0.020
gb|DN447482.1|DN447482 EST943281 Sequencing ESTs from loblo... 44 0.020
gb|DN452317.1|DN452317 EST948116 Sequencing ESTs from loblo... 44 0.020
gb|DN455288.1|DN455288 EST951087 Sequencing ESTs from loblo... 44 0.020
gb|DN456471.1|DN456471 EST952270 Sequencing ESTs from loblo... 44 0.020
gb|DN458982.1|DN458982 EST954781 Sequencing ESTs from loblo... 44 0.020
gb|DN463709.1|DN463709 EST959508 Sequencing ESTs from loblo... 44 0.020
gb|DN464734.1|DN464734 EST960533 Sequencing ESTs from loblo... 44 0.020
gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch... 44 0.020
gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus ni... 44 0.020
gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulf... 44 0.020
gb|DR686482.1|DR686482 EST1076560 Normalized pine embryo li... 44 0.020
gb|DT626735.1|DT626735 EST1159811 Sequencing ESTs from lobl... 44 0.020
gb|DT627526.1|DT627526 EST1160602 Sequencing ESTs from lobl... 44 0.020
gb|BE241255.1|BE241255 NXNV_183_D12_F Nsf Xylem Normal wood... 42 0.078
gb|BQ701670.1|BQ701670 NXSI_118_C02_F NXSI (Nsf Xylem Side ... 42 0.078
gb|CF667045.1|CF667045 RTCNT1_27_G11.g1_A029 Root control P... 42 0.078
gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciat... 42 0.078
gb|DR014691.1|DR014691 HEAT1_51_B07.b1_A029 Root at 37 C fo... 42 0.078
gb|DR014768.1|DR014768 HEAT1_51_B07.g1_A029 Root at 37 C fo... 42 0.078
gb|DR016135.1|DR016135 STRS1_7_H08.g1_A034 Shoot tip pitch ... 42 0.078
gb|DR109956.1|DR109956 RTS1_1_B02.b1_A029 Roots minus sulfu... 42 0.078
gb|DR177927.1|DR177927 RTMNUT1_8_E11.b1_A029 Roots minus mi... 42 0.078
gb|DR384384.1|DR384384 RTHG1_1_H06.g1_A029 Roots plus added... 42 0.078
gb|DR384689.1|DR384689 RTHG1_3_H06.g1_A029 Roots plus added... 42 0.078
gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (M... 42 0.078
gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root w... 40 0.31
gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root w... 40 0.31
gb|CF390133.1|CF390133 RTDR2_12_C07.g1_A021 Loblolly pine r... 40 0.31
gb|CF395399.1|CF395399 RTDS2_11_H08.g1_A021 Drought-stresse... 40 0.31
gb|CO172303.1|CO172303 NDL1_28_G10.g1_A029 Needles control ... 40 0.31
gb|CO198121.1|CO198121 GEO1_11_A02.g1_A029 Root gravitropis... 40 0.31
gb|CO361315.1|CO361315 NDL2_4_D03.b1_A029 Needles control 2... 40 0.31
gb|CO361397.1|CO361397 NDL2_4_D03.g1_A029 Needles control 2... 40 0.31
gb|CV034623.1|CV034623 RTNACL1_10_A11.g1_A029 Roots plus ad... 40 0.31
gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus add... 40 0.31
gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pin... 40 0.31
gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo li... 40 0.31
gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo li... 40 0.31
gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (M... 40 0.31
>gb|CF665728.1|CF665728 RTCNT1_18_C05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_18_C05_A029 3', mRNA sequence
Length = 704
Score = 71.9 bits (36), Expect = 9e-011
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 608 cccggccgaacagacaacgagatcaagaactactggaactcgca 651
||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 95 cccggtcgaacagacaacgagatcaagaattactggaactcgca 138
>gb|CF669490.1|CF669490 RTCNT1_44_A10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_44_A10_A029 3', mRNA sequence
Length = 655
Score = 71.9 bits (36), Expect = 9e-011
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 608 cccggccgaacagacaacgagatcaagaactactggaactcgca 651
||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 363 cccggtcgaacagacaacgagatcaagaattactggaactcgca 320
>gb|DR023047.1|DR023047 STRS1_55_D09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_55_D09_A034 3', mRNA sequence
Length = 645
Score = 71.9 bits (36), Expect = 9e-011
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 608 cccggccgaacagacaacgagatcaagaactactggaactcgca 651
||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 27 cccggtcgaacagacaacgagatcaagaattactggaactcgca 70
>gb|DR079868.1|DR079868 RTFEPL1_18_F11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_18_F11_A029 3', mRNA sequence
Length = 745
Score = 71.9 bits (36), Expect = 9e-011
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 608 cccggccgaacagacaacgagatcaagaactactggaactcgca 651
||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 128 cccggtcgaacagacaacgagatcaagaattactggaactcgca 171
>gb|DR079932.1|DR079932 RTFEPL1_18_F11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_18_F11_A029 5', mRNA sequence
Length = 689
Score = 71.9 bits (36), Expect = 9e-011
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 608 cccggccgaacagacaacgagatcaagaactactggaactcgca 651
||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 249 cccggtcgaacagacaacgagatcaagaattactggaactcgca 292
>gb|CO175228.1|CO175228 NDL1_53_H05.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_H05_A029 3', mRNA sequence
Length = 692
Score = 65.9 bits (33), Expect = 5e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 606 tccccggccgaacagacaacgagatcaagaactactggaac 646
|||||||||||||||||||||| || |||||||||||||||
Sbjct: 218 tccccggccgaacagacaacgaaataaagaactactggaac 178
>gb|CO361899.1|CO361899 NDL2_7_G04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_7_G04_A029 5', mRNA sequence
Length = 871
Score = 65.9 bits (33), Expect = 5e-009
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 606 tccccggccgaacagacaacgagatcaagaactactggaac 646
|||||||||||||||||||||| || |||||||||||||||
Sbjct: 289 tccccggccgaacagacaacgaaataaagaactactggaac 329
>gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST39H05, mRNA sequence
Length = 586
Score = 61.9 bits (31), Expect = 8e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 608 cccggccgaacagacaacgagatcaagaactactggaac 646
||||| |||||||||||||| ||||||||||||||||||
Sbjct: 363 cccgggcgaacagacaacgaaatcaagaactactggaac 401
>gb|CO170303.1|CO170303 NDL1_13_D05.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_13_D05_A029 3', mRNA sequence
Length = 798
Score = 61.9 bits (31), Expect = 8e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 608 cccggccgaacagacaacgagatcaagaactactggaac 646
||||| |||||||||||||| ||||||||||||||||||
Sbjct: 471 cccgggcgaacagacaacgaaatcaagaactactggaac 433
>gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_C07_A029 5', mRNA sequence
Length = 592
Score = 61.9 bits (31), Expect = 8e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 608 cccggccgaacagacaacgagatcaagaactactggaac 646
||||| |||||||||||||| ||||||||||||||||||
Sbjct: 320 cccgggcgaacagacaacgaaatcaagaactactggaac 358
>gb|DR098778.1|DR098778 STRR1_47_G01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_47_G01_A033 5', mRNA sequence
Length = 676
Score = 61.9 bits (31), Expect = 8e-008
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 608 cccggccgaacagacaacgagatcaagaactactggaac 646
||||| |||||||||||||| ||||||||||||||||||
Sbjct: 290 cccgggcgaacagacaacgaaatcaagaactactggaac 328
>gb|CF396247.1|CF396247 RTDS2_15_B11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_15_B11_A021 5', mRNA sequence
Length = 821
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaactcgca 651
|||||||| |||||||| ||||||||||||||||||||
Sbjct: 208 cgaacagataacgagataaagaactactggaactcgca 245
>gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_60_G12_A029 5', mRNA sequence
Length = 769
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 605 ctccccggccgaacagacaacgagatcaagaactactggaactcgcacct 654
||||| || ||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 330 ctccctggacgaacggacaacgaaatcaagaactactggaactctcacct 379
>gb|CX646566.1|CX646566 COLD1_10_D06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_D06_A029 3', mRNA sequence
Length = 802
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaactcgca 651
|||||||| |||||||| ||||||||||||||||||||
Sbjct: 43 cgaacagataacgagataaagaactactggaactcgca 80
>gb|DR744198.1|DR744198 RTCU1_20_G08.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_20_G08_A029 5', mRNA sequence
Length = 644
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaactcgca 651
|||||||| |||||||| ||||||||||||||||||||
Sbjct: 373 cgaacagataacgagataaagaactactggaactcgca 410
>gb|CF386912.1|CF386912 RTDR1_9_D07.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_9_D07_A015 5', mRNA
sequence
Length = 666
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 446 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 490
>gb|CF474496.1|CF474496 RTWW2_9_D02.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_D02_A021 3', mRNA sequence
Length = 472
Score = 58.0 bits (29), Expect = 1e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
|||||||||||||| ||||||||||||||||||
Sbjct: 368 cgaacagacaacgaaatcaagaactactggaac 336
>gb|CF476017.1|CF476017 RTWW2_16_B11.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_16_B11_A021 5', mRNA sequence
Length = 625
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 79 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 123
>gb|CF663743.1|CF663743 RTCNT1_4_H05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_H05_A029 5', mRNA sequence
Length = 705
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 118 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 162
>gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_G11_A029 5', mRNA sequence
Length = 814
Score = 58.0 bits (29), Expect = 1e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
|||||||||||||| ||||||||||||||||||
Sbjct: 299 cgaacagacaacgaaatcaagaactactggaac 331
>gb|CF669684.1|CF669684 RTCNT1_45_A07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_45_A07_A029 5', mRNA sequence
Length = 686
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 444 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 488
>gb|CF672556.1|CF672556 RTCNT1_64_A03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_64_A03_A029 5', mRNA sequence
Length = 253
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 170 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 214
>gb|CO364221.1|CO364221 RTK1_14_A05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_A05_A029 5', mRNA sequence
Length = 801
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 458 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 502
>gb|CO366361.1|CO366361 RTK1_27_A03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_A03_A029 5', mRNA sequence
Length = 842
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 156 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 200
>gb|CV139163.1|CV139163 EST850372 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBC55 5' end, mRNA sequence
Length = 794
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 476 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 520
>gb|DR011876.1|DR011876 HEAT1_8_B02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_8_B02_A029 5', mRNA sequence
Length = 763
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 75 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 119
>gb|DR013838.1|DR013838 HEAT1_21_G09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_21_G09_A029 5', mRNA sequence
Length = 813
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 458 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 502
>gb|DR024798.1|DR024798 STRS1_67_B12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_B12_A034 5', mRNA sequence
Length = 812
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 457 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 501
>gb|DR024941.1|DR024941 STRS1_68_B11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_68_B11_A034 5', mRNA sequence
Length = 746
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 453 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 497
>gb|DR050127.1|DR050127 RTBOR1_21_A09.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_A09_A029 5', mRNA sequence
Length = 867
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 481 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 525
>gb|DR089099.1|DR089099 RTAL1_6_B11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_B11_A029 5', mRNA sequence
Length = 809
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 331 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 375
>gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_8_C03_A029 5', mRNA sequence
Length = 538
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 606 tccccggccgaacagacaacgagatcaagaactactggaac 646
|||||||||||||||||||||| | |||||||||||||||
Sbjct: 483 tccccggccgaacagacaacgaagtaaagaactactggaac 523
>gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_9_G03_A029 5', mRNA sequence
Length = 760
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 620 gacaacgagatcaagaactactggaactc 648
|||||||||||||||||||||||||||||
Sbjct: 350 gacaacgagatcaagaactactggaactc 378
>gb|DR162691.1|DR162691 RTFE1_19_C08.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_19_C08_A029 5', mRNA sequence
Length = 600
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 13 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 57
>gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEI64 3' end, mRNA sequence
Length = 848
Score = 58.0 bits (29), Expect = 1e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
|||||||||||||| ||||||||||||||||||
Sbjct: 388 cgaacagacaacgaaatcaagaactactggaac 420
>gb|DT626587.1|DT626587 EST1158511 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAC43 5' end, mRNA sequence
Length = 738
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 604 cctccccggccgaacagacaacgagatcaagaactactggaactc 648
|||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 476 cctccccggccgcaccgacaacgcgatcaagaaccactggaactc 520
>gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHN42 3' end, mRNA sequence
Length = 857
Score = 58.0 bits (29), Expect = 1e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
|||||||||||||| ||||||||||||||||||
Sbjct: 396 cgaacagacaacgaaatcaagaactactggaac 428
>gb|AW065064.1|AW065064 ST39B10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST39B10, mRNA sequence
Length = 587
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 608 cccggccgaacagacaacgagatcaagaactactgg 643
||||| |||||||||||||| |||||||||||||||
Sbjct: 362 cccgggcgaacagacaacgaaatcaagaactactgg 397
>gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G04_A022 5', mRNA
sequence
Length = 480
Score = 56.0 bits (28), Expect = 5e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaa 645
||||| ||||||||||||||||||||||||||
Sbjct: 393 cgaactgacaacgagatcaagaactactggaa 424
>gb|AW064634.1|AW064634 ST33H05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST33H05, mRNA sequence
Length = 584
Score = 54.0 bits (27), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaactcgca 651
|||||||| |||||||| |||||||||||| |||||||
Sbjct: 398 cgaacagataacgagataaagaactactggnactcgca 435
>gb|CF393225.1|CF393225 RTDR3_17_D12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_17_D12_A022 5', mRNA
sequence
Length = 659
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaactc 648
||||| |||||||||||||| ||||||||||||||
Sbjct: 337 cgaactgacaacgagatcaaaaactactggaactc 371
>gb|CF396127.1|CF396127 RTDS2_13_D06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_13_D06_A021 5', mRNA sequence
Length = 801
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 614 cgaacagacaacgagatcaagaactactggaactc 648
||||| |||||||||||||| ||||||||||||||
Sbjct: 783 cgaactgacaacgagatcaaaaactactggaactc 749
>gb|CF472757.1|CF472757 RTDS1_11_D09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_11_D09_A015 5', mRNA sequence
Length = 667
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaactc 648
||||| |||||||||||||| ||||||||||||||
Sbjct: 308 cgaactgacaacgagatcaaaaactactggaactc 342
>gb|CF478238.1|CF478238 RTWW3_19_H07.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_H07_A022 5', mRNA sequence
Length = 744
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 608 cccggccgaacagacaacgagatcaagaactactggaac 646
||||| || |||||||||||||| |||||||||||||||
Sbjct: 728 cccgggcgcacagacaacgagataaagaactactggaac 690
>gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_18_A01_A029 5', mRNA sequence
Length = 812
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaactc 648
||||| |||||||||||||| ||||||||||||||
Sbjct: 256 cgaactgacaacgagatcaaaaactactggaactc 290
>gb|CO367106.1|CO367106 RTK1_32_E03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_E03_A029 3', mRNA sequence
Length = 867
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaactc 648
||||| |||||||||||||| ||||||||||||||
Sbjct: 99 cgaactgacaacgagatcaaaaactactggaactc 133
>gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_E03_A029 5', mRNA sequence
Length = 873
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaactc 648
||||| |||||||||||||| ||||||||||||||
Sbjct: 310 cgaactgacaacgagatcaaaaactactggaactc 344
>gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_A03_A029 3', mRNA sequence
Length = 790
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 614 cgaacagacaacgagatcaagaactactggaactc 648
||||| |||||||||||||| ||||||||||||||
Sbjct: 487 cgaactgacaacgagatcaaaaactactggaactc 453
>gb|DR014845.1|DR014845 HEAT1_52_A11.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_A11_A029 3', mRNA sequence
Length = 785
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaactc 648
||||| |||||||||||||| ||||||||||||||
Sbjct: 19 cgaactgacaacgagatcaaaaactactggaactc 53
>gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_A11_A029 5', mRNA sequence
Length = 854
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaactc 648
||||| |||||||||||||| ||||||||||||||
Sbjct: 259 cgaactgacaacgagatcaaaaactactggaactc 293
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 159,807
Number of Sequences: 355925
Number of extensions: 159807
Number of successful extensions: 46783
Number of sequences better than 0.5: 194
Number of HSP's better than 0.5 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46529
Number of HSP's gapped (non-prelim): 254
length of query: 1802
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1782
effective length of database: 210,158,737
effective search space: 374502869334
effective search space used: 374502869334
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)