BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3173057.2.1
(1264 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE431362.1|BE431362 NXNV_181_C06_F Nsf Xylem Normal wood... 70 2e-010
gb|CF385673.1|CF385673 RTDR1_5_B07.g1_A015 Loblolly pine ro... 70 2e-010
gb|CF392022.1|CF392022 RTDR3_12_H09.g1_A022 Loblolly pine r... 70 2e-010
gb|CF393377.1|CF393377 RTDR3_20_F10.g1_A022 Loblolly pine r... 70 2e-010
gb|CF393744.1|CF393744 RTDS2_1_F11.b1_A021 Drought-stressed... 70 2e-010
gb|CF394277.1|CF394277 RTDS2_4_A02.g1_A021 Drought-stressed... 70 2e-010
gb|CF398001.1|CF398001 RTDS3_22_F03.b1_A022 Drought-stresse... 70 2e-010
gb|CF398991.1|CF398991 RTDS3_11_H09.g1_A022 Drought-stresse... 70 2e-010
gb|CF402626.1|CF402626 RTWW1_21_D01.g1_A015 Well-watered lo... 70 2e-010
gb|CF664002.1|CF664002 RTCNT1_6_C10.g1_A029 Root control Pi... 70 2e-010
gb|CF668432.1|CF668432 RTCNT1_36_A09.g1_A029 Root control P... 70 2e-010
gb|CF668985.1|CF668985 RTCNT1_39_G12.g1_A029 Root control P... 70 2e-010
gb|CF668995.1|CF668995 RTCNT1_39_H10.g1_A029 Root control P... 70 2e-010
gb|CF671372.1|CF671372 RTCNT1_56_D09.g1_A029 Root control P... 70 2e-010
gb|CO158703.1|CO158703 FLD1_8_E01.g1_A029 Root flooded Pinu... 70 2e-010
gb|CO164051.1|CO164051 FLD1_45_B05.g1_A029 Root flooded Pin... 70 2e-010
gb|CO167267.1|CO167267 FLD1_67_H10.g1_A029 Root flooded Pin... 70 2e-010
gb|CO167863.1|CO167863 FLD1_71_E11.g1_A029 Root flooded Pin... 70 2e-010
gb|CV136191.1|CV136191 EST847400 Sequencing ESTs from loblo... 70 2e-010
gb|CV143704.1|CV143704 EST854913 Sequencing ESTs from loblo... 70 2e-010
gb|CX650902.1|CX650902 COLD1_48_G09.g1_A029 Root cold Pinus... 70 2e-010
gb|CX652206.1|CX652206 COLD1_57_D09.g1_A029 Root cold Pinus... 70 2e-010
gb|CX652372.1|CX652372 COLD1_58_D08.g1_A029 Root cold Pinus... 70 2e-010
gb|CX716008.1|CX716008 RTPQ1_39_C01.g1_A032 Roots treated w... 70 2e-010
gb|DN462584.1|DN462584 EST958383 Sequencing ESTs from loblo... 70 2e-010
gb|DR011623.1|DR011623 HEAT1_6_H03.g1_A029 Root at 37 C for... 70 2e-010
gb|DR070649.1|DR070649 RTDK1_14_F01.g1_A029 Roots, dark Pin... 70 2e-010
gb|DR102486.1|DR102486 STRR1_81_B04.g1_A033 Stem Response R... 70 2e-010
gb|DR166102.1|DR166102 RTPHOS1_9_A07.g2_A029 Roots minus ph... 70 2e-010
gb|DR387430.1|DR387430 RTHG1_21_E08.g2_A029 Roots plus adde... 70 2e-010
gb|DR693562.1|DR693562 EST1083651 Normalized pine embryo li... 70 2e-010
gb|DR743712.1|DR743712 RTCU1_17_E09.g1_A029 Roots plus adde... 70 2e-010
gb|DT626537.1|DT626537 EST1158461 Sequencing ESTs from lobl... 70 2e-010
gb|DT624915.1|DT624915 EST1159190 Sequencing ESTs from lobl... 70 2e-010
gb|BX252311.1|BX252311 BX252311 Pinus pinaster differenciat... 64 1e-008
gb|BF609538.1|BF609538 NXSI_043_G06_F NXSI (Nsf Xylem Side ... 64 1e-008
gb|CF392425.1|CF392425 RTDR3_7_B09.g1_A022 Loblolly pine ro... 64 1e-008
gb|CO198589.1|CO198589 GEO1_14_H05.g1_A029 Root gravitropis... 64 1e-008
gb|CO201395.1|CO201395 RTCNT2_5_B04.g1_A029 Root control 2 ... 64 1e-008
gb|CV031915.1|CV031915 RTNACL1_4_C06.g1_A029 Roots plus add... 64 1e-008
gb|DR012887.1|DR012887 HEAT1_15_D05.g1_A029 Root at 37 C fo... 64 1e-008
gb|CF398437.1|CF398437 RTDS3_12_E06.g1_A022 Drought-stresse... 60 2e-007
gb|BI643863.1|BI643863 NXPV_123_H11_F NXPV (Nsf Xylem Plani... 58 9e-007
gb|DR023743.1|DR023743 STRS1_59_F05.g1_A034 Shoot tip pitch... 58 9e-007
gb|CF475497.1|CF475497 RTWW2_12_G05.g1_A021 Well-watered lo... 56 4e-006
gb|CO165167.1|CO165167 FLD1_52_G05.g1_A029 Root flooded Pin... 56 4e-006
gb|CO199449.1|CO199449 GEO2_1_F10.b1_A032 Root gravitropism... 56 4e-006
gb|CO364426.1|CO364426 RTK1_15_D07.g1_A029 Roots minus pota... 56 4e-006
gb|DR180554.1|DR180554 RTMNUT1_33_H11.b1_A029 Roots minus m... 56 4e-006
gb|DR687672.1|DR687672 EST1077754 Normalized pine embryo li... 56 4e-006
gb|DT634371.1|DT634371 EST1149302 Normalized pine embryo li... 56 4e-006
gb|CX714844.1|CX714844 RTPQ1_27_B02.g1_A032 Roots treated w... 52 6e-005
gb|DR177175.1|DR177175 RTMNUT1_3_C10.g1_A029 Roots minus mi... 52 6e-005
gb|CF402920.1|CF402920 RTWW1_23_E10.g1_A015 Well-watered lo... 50 2e-004
gb|DR019876.1|DR019876 STRS1_33_C04.b1_A034 Shoot tip pitch... 48 9e-004
gb|AW985104.1|AW985104 NXNV_133_A03_F Nsf Xylem Normal wood... 42 0.055
gb|AA556765.1|AA556765 607 Loblolly pine NA Pinus taeda cDN... 40 0.22
gb|AW226384.1|AW226384 ST81F12 Pine TriplEx shoot tip libra... 40 0.22
gb|BX249419.1|BX249419 BX249419 Pinus pinaster differenciat... 40 0.22
gb|BX249878.1|BX249878 BX249878 Pinus pinaster differenciat... 40 0.22
gb|BX251512.1|BX251512 BX251512 Pinus pinaster differenciat... 40 0.22
gb|BX251939.1|BX251939 BX251939 Pinus pinaster differenciat... 40 0.22
gb|DN459373.1|DN459373 EST955172 Sequencing ESTs from loblo... 40 0.22
gb|DR071245.1|DR071245 RTDK1_18_D03.g1_A029 Roots, dark Pin... 40 0.22
gb|DR094013.1|DR094013 STRR1_11_H02.g1_A033 Stem Response R... 40 0.22
gb|DR117863.1|DR117863 RTMG1_9_E04.g1_A029 Roots minus magn... 40 0.22
>gb|BE431362.1|BE431362 NXNV_181_C06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_181_C06 5' similar to Arabidopsis thaliana
sequence At5g43060 cysteine protease component of
protease-inhibitor complex see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 541
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 148 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 89
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 88 ggcacatcttc 78
>gb|CF385673.1|CF385673 RTDR1_5_B07.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_5_B07_A015 5', mRNA
sequence
Length = 707
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 144 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 85
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 84 ggcacatcttc 74
>gb|CF392022.1|CF392022 RTDR3_12_H09.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_12_H09_A022 5', mRNA
sequence
Length = 775
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 212 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 153
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 152 ggcacatcttc 142
>gb|CF393377.1|CF393377 RTDR3_20_F10.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_20_F10_A022 5', mRNA
sequence
Length = 754
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 370 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 311
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 310 ggcacatcttc 300
>gb|CF393744.1|CF393744 RTDS2_1_F11.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_F11_A021 3', mRNA sequence
Length = 756
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 368 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 427
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 428 ggcacatcttc 438
>gb|CF394277.1|CF394277 RTDS2_4_A02.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_4_A02_A021 5', mRNA sequence
Length = 731
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 395 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 336
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 335 ggcacatcttc 325
>gb|CF398001.1|CF398001 RTDS3_22_F03.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_22_F03_A022 3', mRNA sequence
Length = 744
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 423 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 482
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 483 ggcacatcttc 493
>gb|CF398991.1|CF398991 RTDS3_11_H09.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_11_H09_A022 5', mRNA sequence
Length = 756
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 461 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 402
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 401 ggcacatcttc 391
>gb|CF402626.1|CF402626 RTWW1_21_D01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_D01_A015 5', mRNA sequence
Length = 689
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 225 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 166
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 165 ggcacatcttc 155
>gb|CF664002.1|CF664002 RTCNT1_6_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_C10_A029 5', mRNA sequence
Length = 530
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 97 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 38
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 37 ggcacatcttc 27
>gb|CF668432.1|CF668432 RTCNT1_36_A09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_A09_A029 5', mRNA sequence
Length = 774
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 94 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 35
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 34 ggcacatcttc 24
>gb|CF668985.1|CF668985 RTCNT1_39_G12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_G12_A029 5', mRNA sequence
Length = 736
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 556 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 497
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 496 ggcacatcttc 486
>gb|CF668995.1|CF668995 RTCNT1_39_H10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_H10_A029 5', mRNA sequence
Length = 721
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 147 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 88
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 87 ggcacatcttc 77
>gb|CF671372.1|CF671372 RTCNT1_56_D09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_56_D09_A029 5', mRNA sequence
Length = 676
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 94 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 35
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 34 ggcacatcttc 24
>gb|CO158703.1|CO158703 FLD1_8_E01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_8_E01_A029 5', mRNA sequence
Length = 221
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 162 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 103
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 102 ggcacatcttc 92
>gb|CO164051.1|CO164051 FLD1_45_B05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_B05_A029 5', mRNA sequence
Length = 905
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 844 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 785
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 784 ggcacatcttc 774
>gb|CO167267.1|CO167267 FLD1_67_H10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_67_H10_A029 5', mRNA sequence
Length = 814
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 286 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 227
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 226 ggcacatcttc 216
>gb|CO167863.1|CO167863 FLD1_71_E11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_71_E11_A029 5', mRNA sequence
Length = 730
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 92 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 33
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 32 ggcacatcttc 22
>gb|CV136191.1|CV136191 EST847400 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIA832 5' end, mRNA sequence
Length = 939
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 73 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 14
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 13 ggcacatcttc 3
>gb|CV143704.1|CV143704 EST854913 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPICW45 5' end, mRNA sequence
Length = 937
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 180 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 121
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 120 ggcacatcttc 110
>gb|CX650902.1|CX650902 COLD1_48_G09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_G09_A029 5', mRNA sequence
Length = 771
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 349 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 290
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 289 ggcacatcttc 279
>gb|CX652206.1|CX652206 COLD1_57_D09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_57_D09_A029 5', mRNA sequence
Length = 718
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 616 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 557
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 556 ggcacatcttc 546
>gb|CX652372.1|CX652372 COLD1_58_D08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_D08_A029 5', mRNA sequence
Length = 667
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 614 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 555
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 554 ggcacatcttc 544
>gb|CX716008.1|CX716008 RTPQ1_39_C01.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_39_C01_A032 5', mRNA sequence
Length = 687
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 487 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 428
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 427 ggcacatcttc 417
>gb|DN462584.1|DN462584 EST958383 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIO20 5' end, mRNA sequence
Length = 894
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 262 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 203
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 202 ggcacatcttc 192
>gb|DR011623.1|DR011623 HEAT1_6_H03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_6_H03_A029 5', mRNA sequence
Length = 781
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 316 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 257
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 256 ggcacatcttc 246
>gb|DR070649.1|DR070649 RTDK1_14_F01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_14_F01_A029 5', mRNA sequence
Length = 847
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 428 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 369
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 368 ggcacatcttc 358
>gb|DR102486.1|DR102486 STRR1_81_B04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_81_B04_A033 5', mRNA sequence
Length = 621
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 289 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 230
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 229 ggcacatcttc 219
>gb|DR166102.1|DR166102 RTPHOS1_9_A07.g2_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_9_A07_A029 5', mRNA sequence
Length = 381
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 288 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 229
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 228 ggcacatcttc 218
>gb|DR387430.1|DR387430 RTHG1_21_E08.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_21_E08_A029 5', mRNA sequence
Length = 502
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 91 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 32
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 31 ggcacatcttc 21
>gb|DR693562.1|DR693562 EST1083651 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE096 3' end, mRNA sequence
Length = 749
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 298 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 239
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 238 ggcacatcttc 228
>gb|DR743712.1|DR743712 RTCU1_17_E09.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_17_E09_A029 5', mRNA sequence
Length = 863
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 73 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 14
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 13 ggcacatcttc 3
>gb|DT626537.1|DT626537 EST1158461 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAB87 5' end, mRNA sequence
Length = 967
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 73 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 14
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 13 ggcacatcttc 3
>gb|DT624915.1|DT624915 EST1159190 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAJ88 5' end, mRNA sequence
Length = 969
Score = 69.9 bits (35), Expect = 2e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | ||||||| |||||||||||| |||||||||
Sbjct: 180 atggcaacgctaatcggctgatgcgccgcggccttcttcagcgacttctcatcgttctca 121
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 120 ggcacatcttc 110
>gb|BX252311.1|BX252311 BX252311 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP062G03 similar to CYSTEINE PROTEINASE
PRECURSOR, mRNA sequence
Length = 716
Score = 63.9 bits (32), Expect = 1e-008
Identities = 125/156 (80%)
Strand = Plus / Minus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 203 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 144
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaa 884
|||||| | ||| | ||||||| || ||| ||||| ||||| ||||||||||||||
Sbjct: 143 ttggctgattagccgcagccttcttcaacgatttctcatcgttttcaggcacatcttcgt 84
Query: 885 agccatcgatgctcacaaccctggcatttttcctgt 920
|| ||||||| |||| || ||||||||||||||
Sbjct: 83 agtcatcgattgtcaccacatgggcatttttcctgt 48
>gb|BF609538.1|BF609538 NXSI_043_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_043_G06 5' similar to Arabidopsis thaliana
sequence At5g43060 cysteine protease component of
protease-inhibitor complex see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 388
Score = 63.9 bits (32), Expect = 1e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 812 atggcaacgctaactggctggtgagcaaccgccttctgcagcgacttctcgtcgttctca 871
||||||||||||| ||||| || || | | ||||| |||||||||||| |||||||||
Sbjct: 286 atggcaacgctaatcggctgatgcgccgcggncttcttcagcgacttctcatcgttctca 227
Query: 872 ggcacatcttc 882
|||||||||||
Sbjct: 226 ggcacatcttc 216
>gb|CF392425.1|CF392425 RTDR3_7_B09.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_7_B09_A022 5', mRNA
sequence
Length = 618
Score = 63.9 bits (32), Expect = 1e-008
Identities = 125/156 (80%)
Strand = Plus / Minus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 258 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 199
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaa 884
|||||| | ||| | ||||||| || ||| ||||| ||||| ||||||||||||||
Sbjct: 198 ttggctgattagccgcagccttcttcaacgatttctcatcgttttcaggcacatcttcgt 139
Query: 885 agccatcgatgctcacaaccctggcatttttcctgt 920
|| ||||||| |||| || ||||||||||||||
Sbjct: 138 agtcatcgattgtcaccacatgggcatttttcctgt 103
>gb|CO198589.1|CO198589 GEO1_14_H05.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_14_H05_A029 5', mRNA sequence
Length = 548
Score = 63.9 bits (32), Expect = 1e-008
Identities = 125/156 (80%)
Strand = Plus / Minus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 257 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 198
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaa 884
|||||| | ||| | ||||||| || ||| ||||| ||||| ||||||||||||||
Sbjct: 197 ttggctgattagccgcagccttcttcaacgatttctcatcgttttcaggcacatcttcgt 138
Query: 885 agccatcgatgctcacaaccctggcatttttcctgt 920
|| ||||||| |||| || ||||||||||||||
Sbjct: 137 agtcatcgattgtcaccacatgggcatttttcctgt 102
>gb|CO201395.1|CO201395 RTCNT2_5_B04.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_5_B04_A029 5', mRNA sequence
Length = 464
Score = 63.9 bits (32), Expect = 1e-008
Identities = 125/156 (80%)
Strand = Plus / Minus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 233 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 174
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaa 884
|||||| | ||| | ||||||| || ||| ||||| ||||| ||||||||||||||
Sbjct: 173 ttggctgattagccgcagccttcttcaacgatttctcatcgttttcaggcacatcttcgt 114
Query: 885 agccatcgatgctcacaaccctggcatttttcctgt 920
|| ||||||| |||| || ||||||||||||||
Sbjct: 113 agtcatcgattgtcaccacatgggcatttttcctgt 78
>gb|CV031915.1|CV031915 RTNACL1_4_C06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_4_C06_A029 5', mRNA sequence
Length = 769
Score = 63.9 bits (32), Expect = 1e-008
Identities = 125/156 (80%)
Strand = Plus / Minus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 685 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 626
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaa 884
|||||| | ||| | ||||||| || ||| ||||| ||||| ||||||||||||||
Sbjct: 625 ttggctgattagccgcagccttcttcaacgatttctcatcgttttcaggcacatcttcgt 566
Query: 885 agccatcgatgctcacaaccctggcatttttcctgt 920
|| ||||||| |||| || ||||||||||||||
Sbjct: 565 agtcatcgattgtcaccacatgggcatttttcctgt 530
>gb|DR012887.1|DR012887 HEAT1_15_D05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_D05_A029 5', mRNA sequence
Length = 701
Score = 63.9 bits (32), Expect = 1e-008
Identities = 125/156 (80%)
Strand = Plus / Minus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 506 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 447
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaa 884
|||||| | ||| | ||||||| || ||| ||||| ||||| ||||||||||||||
Sbjct: 446 ttggctgattagccgcagccttcttcaacgatttctcatcgttttcaggcacatcttcgt 387
Query: 885 agccatcgatgctcacaaccctggcatttttcctgt 920
|| ||||||| |||| || ||||||||||||||
Sbjct: 386 agtcatcgattgtcaccacatgggcatttttcctgt 351
>gb|CF398437.1|CF398437 RTDS3_12_E06.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_12_E06_A022 5', mRNA sequence
Length = 605
Score = 60.0 bits (30), Expect = 2e-007
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 119 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 60
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttc 882
|||||| | ||| | ||||||| || ||| ||||| ||||| ||||||||||||||
Sbjct: 59 ttggctgattagccgcagccttcttcaacgatttctcatcgttttcaggcacatcttc 2
>gb|BI643863.1|BI643863 NXPV_123_H11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_123_H11 5' similar to Arabidopsis
thaliana sequence At5g43060 cysteine protease component
of protease-inhibitor complex see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 492
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 850 cagcgacttctcgtcgttctcaggcacatcttc 882
|||||||||||| ||||||||||||||||||||
Sbjct: 352 cagcgacttctcatcgttctcaggcacatcttc 320
>gb|DR023743.1|DR023743 STRS1_59_F05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_59_F05_A034 5', mRNA sequence
Length = 342
Score = 58.0 bits (29), Expect = 9e-007
Identities = 95/117 (81%)
Strand = Plus / Minus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 223 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 164
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatctt 881
|||||| | ||| | ||||||| || ||| ||||| ||||| |||||||||||||
Sbjct: 163 ttggctgattagccgcagccttcttcaacgatttctcatcgttttcaggcacatctt 107
>gb|CF475497.1|CF475497 RTWW2_12_G05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_G05_A021 5', mRNA sequence
Length = 761
Score = 56.0 bits (28), Expect = 4e-006
Identities = 79/96 (82%)
Strand = Plus / Minus
Query: 787 ctggaactcccggccaccggcctcaatggcaacgctaactggctggtgagcaaccgcctt 846
||||||||||| || | ||| || ||||||||||||| |||||| | ||| | |||||
Sbjct: 124 ctggaactccctcccgctggcttcgatggcaacgctaattggctgattagccgcagcctt 65
Query: 847 ctgcagcgacttctcgtcgttctcaggcacatcttc 882
|| || ||| ||||| ||||| ||||||||||||||
Sbjct: 64 cttcaacgatttctcatcgttttcaggcacatcttc 29
>gb|CO165167.1|CO165167 FLD1_52_G05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_52_G05_A029 5', mRNA sequence
Length = 820
Score = 56.0 bits (28), Expect = 4e-006
Identities = 124/156 (79%)
Strand = Plus / Minus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 266 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 207
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaa 884
|||||| | ||| | ||||||| || ||| || || ||||| ||||||||||||||
Sbjct: 206 ttggctgattagccgcagccttcttcaacgatttttcatcgttttcaggcacatcttcgt 147
Query: 885 agccatcgatgctcacaaccctggcatttttcctgt 920
|| ||||||| |||| || ||||||||||||||
Sbjct: 146 agtcatcgattgtcaccacatgggcatttttcctgt 111
>gb|CO199449.1|CO199449 GEO2_1_F10.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_F10_A032 3', mRNA sequence
Length = 890
Score = 56.0 bits (28), Expect = 4e-006
Identities = 124/156 (79%)
Strand = Plus / Plus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 397 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 456
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaa 884
|||||| | ||| | ||||||| || ||| || || ||||| ||||||||||||||
Sbjct: 457 ttggctgattagccgcagccttcttcaacgatttttcatcgttttcaggcacatcttcgt 516
Query: 885 agccatcgatgctcacaaccctggcatttttcctgt 920
|| ||||||| |||| || ||||||||||||||
Sbjct: 517 agtcatcgattgtcaccacatgggcatttttcctgt 552
>gb|CO364426.1|CO364426 RTK1_15_D07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D07_A029 5', mRNA sequence
Length = 891
Score = 56.0 bits (28), Expect = 4e-006
Identities = 124/156 (79%)
Strand = Plus / Minus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 188 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 129
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaa 884
|||||| | ||| | ||||||| || ||| || || ||||| ||||||||||||||
Sbjct: 128 ttggctgattagccgcagccttcttcaacgatttttcatcgttttcaggcacatcttcgt 69
Query: 885 agccatcgatgctcacaaccctggcatttttcctgt 920
|| ||||||| |||| || ||||||||||||||
Sbjct: 68 agtcatcgattgtcaccacatgggcatttttcctgt 33
>gb|DR180554.1|DR180554 RTMNUT1_33_H11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_33_H11_A029 3', mRNA sequence
Length = 832
Score = 56.0 bits (28), Expect = 4e-006
Identities = 124/156 (79%)
Strand = Plus / Plus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 41 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 100
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaa 884
|||||| | ||| | ||||||| || ||| || || ||||| ||||||||||||||
Sbjct: 101 ttggctgattagccgcagccttcttcaacgatttttcatcgttttcaggcacatcttcgt 160
Query: 885 agccatcgatgctcacaaccctggcatttttcctgt 920
|| ||||||| |||| || ||||||||||||||
Sbjct: 161 agtcatcgattgtcaccacatgggcatttttcctgt 196
>gb|DR687672.1|DR687672 EST1077754 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABV23 3' end, mRNA sequence
Length = 788
Score = 56.0 bits (28), Expect = 4e-006
Identities = 124/156 (79%)
Strand = Plus / Minus
Query: 765 tgaagacacccgatttgtagagctggaactcccggccaccggcctcaatggcaacgctaa 824
|||| ||||| |||| ||| | ||||||||||| || | ||| || |||||||||||||
Sbjct: 434 tgaacacaccagattcgtaaaactggaactccctcccgctggcttcgatggcaacgctaa 375
Query: 825 ctggctggtgagcaaccgccttctgcagcgacttctcgtcgttctcaggcacatcttcaa 884
|||||| | ||| | ||||||| || ||| | ||| ||||| ||||||||||||||
Sbjct: 374 ttggctgattagccgcagccttcttcaacgattcctcatcgttttcaggcacatcttcgt 315
Query: 885 agccatcgatgctcacaaccctggcatttttcctgt 920
|| ||||||| |||| || ||||||||||||||
Sbjct: 314 agtcatcgattgtcaccacatgggcatttttcctgt 279
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 120,515
Number of Sequences: 355925
Number of extensions: 120515
Number of successful extensions: 35377
Number of sequences better than 0.5: 66
Number of HSP's better than 0.5 without gapping: 65
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35228
Number of HSP's gapped (non-prelim): 136
length of query: 1264
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1245
effective length of database: 210,514,662
effective search space: 262090754190
effective search space used: 262090754190
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)