BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521825.2.1
(2812 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BD236172.1| Materials and method for modification of pl... 172 5e-041
gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus adde... 165 1e-038
gb|CO364026.1|CO364026 RTK1_13_F04.b1_A029 Roots minus pota... 62 1e-007
gb|CO364190.1|CO364190 RTK1_14_F04.b1_A029 Roots minus pota... 62 1e-007
gb|DR019864.1|DR019864 STRS1_33_A09.b1_A034 Shoot tip pitch... 62 1e-007
gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stresse... 60 5e-007
gb|DR059847.1|DR059847 RTNIT1_20_D09.b1_A029 Roots minus ni... 58 2e-006
dbj|BD236173.1| Materials and method for modification of pl... 44 0.031
gb|DR692784.1|DR692784 EST1082872 Normalized pine embryo li... 42 0.12
gb|DR694774.1|DR694774 EST1084866 Normalized pine embryo li... 42 0.12
gb|DT637558.1|DT637558 EST1152489 Normalized pine embryo li... 42 0.12
gb|DT639042.1|DT639042 EST1153973 Normalized pine embryo li... 42 0.12
>dbj|BD236172.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 408
Score = 172 bits (87), Expect = 5e-041
Identities = 288/355 (81%)
Strand = Plus / Minus
Query: 734 ttcttgggatggaaattgaaaacaaaaactaaatctccacgttcaaagacaataaccttt 793
|||||||||||||| ||||||||||| |||| ||| || |||||||| ||||| |||||
Sbjct: 394 ttcttgggatggaagttgaaaacaaacactatatcgcctcgttcaaaaacaatcacctta 335
Query: 794 tcctcatcgttcatgtcgctgacgatctgctttgacgacgaaaggaaggaaaatctctca 853
|| || || || ||| || || ||||||||||| | ||||| |||| |||||
Sbjct: 334 tcttcttcatttgcaatgctaactatttgctttgacgatgcgaggaaatgaaatttctca 275
Query: 854 tcgagcgcattcatcgcttggtcaaacgcattcatgtacttgtaccgcaagtgatcagtg 913
|| ||| ||||||| |||| |||||| |||||| ||||||| | || |||||| |||
Sbjct: 274 tcaagctcattcatggctttgtcaaaattattcataaacttgtatctcaggtgatctgtg 215
Query: 914 tccacaaggctccactgtcgtctgcatttatcatagctccagttgttcccttctcttgga 973
||||| | | ||||||||| ||| ||||| ||||||||||| || ||||| ||||||
Sbjct: 214 tccactaagttccactgtcttctacatttttcatagctccaaccatttccttcccttgga 155
Query: 974 aagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagccatcacct 1033
|||||||||||||| || |||||||||||||||||||||||||| | ||||| || ||
Sbjct: 154 aagtcaatccattccggatgaccaaactcatttcccataaaattaagatagccctcgcca 95
Query: 1034 ccaagggccattgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaa 1088
|| || |||||||| ||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 94 cctagtgccattgttatgaaatgaatcatcttgtgaagtgcaatcccacgatcaa 40
>gb|DR089935.1|DR089935 RTAL1_11_E09.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_11_E09_A029 5', mRNA sequence
Length = 700
Score = 165 bits (83), Expect = 1e-038
Identities = 284/351 (80%)
Strand = Plus / Minus
Query: 738 tgggatggaaattgaaaacaaaaactaaatctccacgttcaaagacaataaccttttcct 797
|||||||||| ||||||||||| |||| ||| || |||||||| ||||| ||||| || |
Sbjct: 700 tgggatggaagttgaaaacaaacactatatcgcctcgttcaaaaacaatcaccttatctt 641
Query: 798 catcgttcatgtcgctgacgatctgctttgacgacgaaaggaaggaaaatctctcatcga 857
| || || ||| || || ||||||||||| | ||||| |||| ||||||| |
Sbjct: 640 cttcatttgcactgctaactatttgctttgacgatgcgaggaaatgaaatttctcatcaa 581
Query: 858 gcgcattcatcgcttggtcaaacgcattcatgtacttgtaccgcaagtgatcagtgtcca 917
|| ||||||| |||| |||||| |||||| ||||||| | || |||||| |||||||
Sbjct: 580 gctcattcatggctttgtcaaaattattcataaacttgtatctcaggtgatctgtgtcca 521
Query: 918 caaggctccactgtcgtctgcatttatcatagctccagttgttcccttctcttggaaagt 977
| | | ||||||||| ||| ||||| ||||||||||| || ||||| ||||||||||
Sbjct: 520 ctaagttccactgtcttctacatttttcatagctccaaccatttccttcccttggaaagt 461
Query: 978 caatccattctgggtgaccaaactcatttcccataaaattcaagtagccatcacctccaa 1037
|||||||||| || |||||||||||||||||||||||||| | ||||| || || || |
Sbjct: 460 caatccattccggatgaccaaactcatttcccataaaattaagatagccctcgccaccta 401
Query: 1038 gggccattgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaa 1088
| |||||||| ||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 400 gtgccattgttatgaaatgaatcatcttgtgaagtgcaatcccacgatcaa 350
Score = 91.7 bits (46), Expect = 1e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 1114 tgacatgccagtgtacatttccttgtccatcaggagaaatgcaatagttttgtcgccaac 1173
||||||| ||| |||||| ||||||||||| | | ||||||||||| ||||| |||||
Sbjct: 324 tgacatggcagagtacatctccttgtccattaaggtgaatgcaatagtcttgtcaccaac 265
Query: 1174 aatagactgatcatggctctcagcatatgcgatgcatttttcagtatatctcctgttagt 1233
||| ||||||||||| || || |||||||| | ||||| ||||||||||||||||| ||
Sbjct: 264 aattgactgatcatgactttctgcatatgcaacacatttctcagtatatctcctgttggt 205
Query: 1234 ca 1235
||
Sbjct: 204 ca 203
Score = 44.1 bits (22), Expect = 0.031
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 1310 atagccattgccaggcgatagtcaaacccaaccccaccttca 1351
||||||||||| |||||||| ||||| |||| |||||||||
Sbjct: 128 atagccattgctaggcgataatcaaatccaagtccaccttca 87
>gb|CO364026.1|CO364026 RTK1_13_F04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_F04_A029 3', mRNA sequence
Length = 852
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 734 ttcttgggatggaaattgaaaacaaaaactaaatctccacgttcaaagacaataacctt 792
|||||||||||||| ||||||||||| |||| ||| || |||||||| ||||| |||||
Sbjct: 148 ttcttgggatggaagttgaaaacaaacactatatcgcctcgttcaaaaacaatcacctt 90
>gb|CO364190.1|CO364190 RTK1_14_F04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_F04_A029 3', mRNA sequence
Length = 847
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 734 ttcttgggatggaaattgaaaacaaaaactaaatctccacgttcaaagacaataacctt 792
|||||||||||||| ||||||||||| |||| ||| || |||||||| ||||| |||||
Sbjct: 143 ttcttgggatggaagttgaaaacaaacactatatcgcctcgttcaaaaacaatcacctt 85
>gb|DR019864.1|DR019864 STRS1_33_A09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_A09_A034 3', mRNA sequence
Length = 867
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 734 ttcttgggatggaaattgaaaacaaaaactaaatctccacgttcaaagacaataacctt 792
|||||||||||||| ||||||||||| |||| ||| || |||||||| ||||| |||||
Sbjct: 143 ttcttgggatggaagttgaaaacaaacactatatcgcctcgttcaaaaacaatcacctt 85
>gb|CF396527.1|CF396527 RTDS2_22_D06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_D06_A021 5', mRNA sequence
Length = 633
Score = 60.0 bits (30), Expect = 5e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 972 gaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
|||| ||||||||||||||||| ||||| ||||||||||| |||||
Sbjct: 633 gaaaatcaatccattctgggtgtccaaattcatttcccatgaaatt 588
>gb|DR059847.1|DR059847 RTNIT1_20_D09.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_20_D09_A029 3', mRNA sequence
Length = 726
Score = 58.0 bits (29), Expect = 2e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 2315 ccattccagtcattgaagtcaccaataagctctgcctcctgcgcagcaggtgcccattca 2374
|||||||| ||||||| || |||||||||| |||||| | |||||||||||||| ||
Sbjct: 58 ccattccaagcattgaaatccccaataagctgtgcctcttttgcagcaggtgcccactcc 117
Query: 2375 cgatataca 2383
|||||||||
Sbjct: 118 cgatataca 126
>dbj|BD236173.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 476
Score = 44.1 bits (22), Expect = 0.031
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1892 gaagcatagtacgaatgctccataactgccatca 1925
||||||||||| | ||| ||||||||||||||||
Sbjct: 118 gaagcatagtaggcatgttccataactgccatca 85
>gb|DR692784.1|DR692784 EST1082872 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADQ34 3' end, mRNA sequence
Length = 746
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 733 tttcttgggatggaaattgaaaaca 757
||||||||| |||||||||||||||
Sbjct: 227 tttcttgggctggaaattgaaaaca 203
>gb|DR694774.1|DR694774 EST1084866 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEG66 3' end, mRNA sequence
Length = 790
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 733 tttcttgggatggaaattgaaaaca 757
||||||||| |||||||||||||||
Sbjct: 227 tttcttgggctggaaattgaaaaca 203
>gb|DT637558.1|DT637558 EST1152489 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH506 3' end, mRNA sequence
Length = 879
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 733 tttcttgggatggaaattgaaaaca 757
||||||||| |||||||||||||||
Sbjct: 235 tttcttgggctggaaattgaaaaca 211
>gb|DT639042.1|DT639042 EST1153973 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHM39 3' end, mRNA sequence
Length = 792
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 733 tttcttgggatggaaattgaaaaca 757
||||||||| |||||||||||||||
Sbjct: 235 tttcttgggctggaaattgaaaaca 211
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 336,571
Number of Sequences: 355925
Number of extensions: 336571
Number of successful extensions: 82732
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82705
Number of HSP's gapped (non-prelim): 24
length of query: 2812
length of database: 217,277,237
effective HSP length: 20
effective length of query: 2792
effective length of database: 210,158,737
effective search space: 586763193704
effective search space used: 586763193704
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)