BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404858.2.1
(958 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF384992.1|CF384992 RTDR1_1_A09.b1_A015 Loblolly pine ro... 44 0.010
gb|CF385097.1|CF385097 RTDR1_1_A09.g1_A015 Loblolly pine ro... 44 0.010
gb|CF385521.1|CF385521 RTDR1_4_C11.g1_A015 Loblolly pine ro... 44 0.010
gb|CF387173.1|CF387173 RTDR1_11_F05.b1_A015 Loblolly pine r... 44 0.010
gb|CF387180.1|CF387180 RTDR1_11_A03.b1_A015 Loblolly pine r... 44 0.010
gb|CF387185.1|CF387185 RTDR1_11_G01.b1_A015 Loblolly pine r... 44 0.010
gb|CF387199.1|CF387199 RTDR1_11_F05.g1_A015 Loblolly pine r... 44 0.010
gb|CF387208.1|CF387208 RTDR1_11_A03.g1_A015 Loblolly pine r... 44 0.010
gb|CF387216.1|CF387216 RTDR1_11_G01.g1_A015 Loblolly pine r... 44 0.010
gb|CF387738.1|CF387738 RTDR1_19_B05.g1_A015 Loblolly pine r... 44 0.010
gb|CF388275.1|CF388275 RTDR2_2_H08.b1_A021 Loblolly pine ro... 44 0.010
gb|CF388365.1|CF388365 RTDR2_2_H08.g1_A021 Loblolly pine ro... 44 0.010
gb|CF391123.1|CF391123 RTDR3_4_B07.b1_A022 Loblolly pine ro... 44 0.010
gb|CF391226.1|CF391226 RTDR3_4_B07.g1_A022 Loblolly pine ro... 44 0.010
gb|CF400596.1|CF400596 RTWW1_6_F01.g1_A015 Well-watered lob... 44 0.010
gb|CF400634.1|CF400634 RTWW1_6_G01.g1_A015 Well-watered lob... 44 0.010
gb|CF402277.1|CF402277 RTWW1_19_H09.g1_A015 Well-watered lo... 44 0.010
gb|CF402651.1|CF402651 RTWW1_22_H01.b1_A015 Well-watered lo... 44 0.010
gb|CF402750.1|CF402750 RTWW1_22_H01.g1_A015 Well-watered lo... 44 0.010
gb|CF471464.1|CF471464 RTDS1_3_B01.g1_A015 Drought-stressed... 44 0.010
gb|CF664334.1|CF664334 RTCNT1_9_D05.b1_A029 Root control Pi... 44 0.010
gb|CF664416.1|CF664416 RTCNT1_9_D05.g1_A029 Root control Pi... 44 0.010
gb|CF667726.1|CF667726 RTCNT1_32_E01.b1_A029 Root control P... 44 0.010
gb|CF667812.1|CF667812 RTCNT1_32_E01.g1_A029 Root control P... 44 0.010
gb|CO161978.1|CO161978 FLD1_32_H10.b1_A029 Root flooded Pin... 44 0.010
gb|CO162051.1|CO162051 FLD1_32_H10.g1_A029 Root flooded Pin... 44 0.010
gb|CV033509.1|CV033509 RTNACL1_35_A08.b1_A029 Roots plus ad... 44 0.010
gb|CV036197.1|CV036197 RTNACL1_57_H11.b1_A029 Roots plus ad... 44 0.010
gb|CV036263.1|CV036263 RTNACL1_57_H11.g1_A029 Roots plus ad... 44 0.010
gb|DR053744.1|DR053744 RTCA1_13_C03.b1_A029 Roots minus cal... 44 0.010
gb|DR053823.1|DR053823 RTCA1_13_C03.g1_A029 Roots minus cal... 44 0.010
gb|DR057648.1|DR057648 RTNIT1_7_B06.b1_A029 Roots minus nit... 44 0.010
gb|DR058361.1|DR058361 RTNIT1_11_G12.b1_A029 Roots minus ni... 44 0.010
gb|DR058444.1|DR058444 RTNIT1_11_G06.g1_A029 Roots minus ni... 44 0.010
gb|DR058829.1|DR058829 RTNIT1_14_D09.b1_A029 Roots minus ni... 44 0.010
gb|DR058916.1|DR058916 RTNIT1_14_D09.g1_A029 Roots minus ni... 44 0.010
gb|DR078833.1|DR078833 RTFEPL1_7_D07.b1_A029 Roots plus add... 44 0.010
gb|DR078907.1|DR078907 RTFEPL1_7_D07.g1_A029 Roots plus add... 44 0.010
gb|DR088948.1|DR088948 RTAL1_5_D08.g1_A029 Roots plus added... 44 0.010
gb|DR089483.1|DR089483 RTAL1_9_B01.b1_A029 Roots plus added... 44 0.010
gb|DR110044.1|DR110044 RTS1_7_C01.b1_A029 Roots minus sulfu... 44 0.010
gb|DR110048.1|DR110048 RTS1_7_D01.b1_A029 Roots minus sulfu... 44 0.010
gb|DR160268.1|DR160268 RTFE1_5_B07.b1_A029 Roots minus iron... 44 0.010
gb|DR163899.1|DR163899 RTFE1_45_D04.g1_A029 Roots minus iro... 44 0.010
gb|DR179154.1|DR179154 RTMNUT1_16_G08.b1_A029 Roots minus m... 44 0.010
gb|DR179233.1|DR179233 RTMNUT1_16_G08.g1_A029 Roots minus m... 44 0.010
gb|DR181295.1|DR181295 RTMNUT1_38_B03.b2_A029 Roots minus m... 44 0.010
gb|DR181370.1|DR181370 RTMNUT1_38_B03.g2_A029 Roots minus m... 44 0.010
gb|DR181968.1|DR181968 RTMNUT1_42_D02.b1_A029 Roots minus m... 44 0.010
gb|DR182052.1|DR182052 RTMNUT1_42_D02.g1_A029 Roots minus m... 44 0.010
gb|DR388738.1|DR388738 RTHG1_30_E06.b1_A029 Roots plus adde... 44 0.010
gb|DR742204.1|DR742204 RTCU1_2_B03.g1_A029 Roots plus added... 44 0.010
gb|DR743617.1|DR743617 RTCU1_17_C02.b1_A029 Roots plus adde... 44 0.010
gb|DR743685.1|DR743685 RTCU1_17_C02.g1_A029 Roots plus adde... 44 0.010
gb|DR016627.1|DR016627 STRS1_11_F01.b1_A034 Shoot tip pitch... 42 0.041
gb|DR090688.1|DR090688 RTAL1_16_F06.g1_A029 Roots plus adde... 42 0.041
gb|DR180740.1|DR180740 RTMNUT1_34_B11.g1_A029 Roots minus m... 42 0.041
gb|DR694973.1|DR694973 EST1085066 Normalized pine embryo li... 42 0.041
gb|DT638957.1|DT638957 EST1153888 Normalized pine embryo li... 42 0.041
>gb|CF384992.1|CF384992 RTDR1_1_A09.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_1_A09_A015 3', mRNA
sequence
Length = 600
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 49 cagcacggcattcgggtgaactgcgt 74
>gb|CF385097.1|CF385097 RTDR1_1_A09.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_1_A09_A015 5', mRNA
sequence
Length = 798
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 478 cagcacggcattcgggtgaactgcgt 503
>gb|CF385521.1|CF385521 RTDR1_4_C11.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_4_C11_A015 5', mRNA
sequence
Length = 728
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 502 cagcacggcattcgggtgaactgcgt 527
>gb|CF387173.1|CF387173 RTDR1_11_F05.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_F05_A015 3', mRNA
sequence
Length = 625
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 205 cagcacggcattcgggtgaactgcgt 230
>gb|CF387180.1|CF387180 RTDR1_11_A03.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_A03_A015 3', mRNA
sequence
Length = 494
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 49 cagcacggcattcgggtgaactgcgt 74
>gb|CF387185.1|CF387185 RTDR1_11_G01.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_G01_A015 3', mRNA
sequence
Length = 606
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 142 cagcacggcattcgggtgaactgcgt 167
>gb|CF387199.1|CF387199 RTDR1_11_F05.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_F05_A015 5', mRNA
sequence
Length = 761
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 552 cagcacggcattcgggtgaactgcgt 577
>gb|CF387208.1|CF387208 RTDR1_11_A03.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_A03_A015 5', mRNA
sequence
Length = 762
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 521 cagcacggcattcgggtgaactgcgt 546
>gb|CF387216.1|CF387216 RTDR1_11_G01.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_G01_A015 5', mRNA
sequence
Length = 628
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 522 cagcacggcattcgggtgaactgcgt 547
>gb|CF387738.1|CF387738 RTDR1_19_B05.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_19_B05_A015 5', mRNA
sequence
Length = 716
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 507 cagcacggcattcgggtgaactgcgt 532
>gb|CF388275.1|CF388275 RTDR2_2_H08.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_2_H08_A021 3', mRNA
sequence
Length = 659
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 231 cagcacggcattcgggtgaactgcgt 256
>gb|CF388365.1|CF388365 RTDR2_2_H08.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_2_H08_A021 5', mRNA
sequence
Length = 735
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 542 cagcacggcattcgggtgaactgcgt 567
>gb|CF391123.1|CF391123 RTDR3_4_B07.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_4_B07_A022 3', mRNA
sequence
Length = 583
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 172 cagcacggcattcgggtgaactgcgt 197
>gb|CF391226.1|CF391226 RTDR3_4_B07.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_4_B07_A022 5', mRNA
sequence
Length = 612
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 500 cagcacggcattcgggtgaactgcgt 525
>gb|CF400596.1|CF400596 RTWW1_6_F01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_6_F01_A015 5', mRNA sequence
Length = 716
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 272 cagcacggcattcgggtgaactgcgt 297
>gb|CF400634.1|CF400634 RTWW1_6_G01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_6_G01_A015 5', mRNA sequence
Length = 714
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 270 cagcacggcattcgggtgaactgcgt 295
>gb|CF402277.1|CF402277 RTWW1_19_H09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_19_H09_A015 5', mRNA sequence
Length = 782
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 455 cagcacggcattcgggtgaactgcgt 480
>gb|CF402651.1|CF402651 RTWW1_22_H01.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_22_H01_A015 3', mRNA sequence
Length = 578
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 154 cagcacggcattcgggtgaactgcgt 179
>gb|CF402750.1|CF402750 RTWW1_22_H01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_22_H01_A015 5', mRNA sequence
Length = 626
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 520 cagcacggcattcgggtgaactgcgt 545
>gb|CF471464.1|CF471464 RTDS1_3_B01.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_3_B01_A015 5', mRNA sequence
Length = 670
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 479 cagcacggcattcgggtgaactgcgt 504
>gb|CF664334.1|CF664334 RTCNT1_9_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_D05_A029 3', mRNA sequence
Length = 679
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 237 cagcacggcattcgggtgaactgcgt 262
>gb|CF664416.1|CF664416 RTCNT1_9_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_D05_A029 5', mRNA sequence
Length = 588
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 523 cagcacggcattcgggtgaactgcgt 548
>gb|CF667726.1|CF667726 RTCNT1_32_E01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_32_E01_A029 3', mRNA sequence
Length = 504
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 433 cagcacggcattcgggtgaactgcgt 408
>gb|CF667812.1|CF667812 RTCNT1_32_E01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_32_E01_A029 5', mRNA sequence
Length = 396
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 383 cagcacggcattcgggtgaactgcgt 358
>gb|CO161978.1|CO161978 FLD1_32_H10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_32_H10_A029 3', mRNA sequence
Length = 627
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 200 cagcacggcattcgggtgaactgcgt 225
>gb|CO162051.1|CO162051 FLD1_32_H10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_32_H10_A029 5', mRNA sequence
Length = 615
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 186 cagcacggcattcgggtgaactgcgt 211
>gb|CV033509.1|CV033509 RTNACL1_35_A08.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_A08_A029 3', mRNA sequence
Length = 891
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 466 cagcacggcattcgggtgaactgcgt 491
>gb|CV036197.1|CV036197 RTNACL1_57_H11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_H11_A029 3', mRNA sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 312 cagcacggcattcgggtgaactgcgt 337
>gb|CV036263.1|CV036263 RTNACL1_57_H11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_H11_A029 5', mRNA sequence
Length = 708
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 520 cagcacggcattcgggtgaactgcgt 545
>gb|DR053744.1|DR053744 RTCA1_13_C03.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_13_C03_A029 3', mRNA sequence
Length = 699
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 252 cagcacggcattcgggtgaactgcgt 277
>gb|DR053823.1|DR053823 RTCA1_13_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_13_C03_A029 5', mRNA sequence
Length = 619
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 549 cagcacggcattcgggtgaactgcgt 574
>gb|DR057648.1|DR057648 RTNIT1_7_B06.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_7_B06_A029 3', mRNA sequence
Length = 831
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 359 cagcacggcattcgggtgaactgcgt 384
>gb|DR058361.1|DR058361 RTNIT1_11_G12.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_G12_A029 3', mRNA sequence
Length = 707
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 279 cagcacggcattcgggtgaactgcgt 304
>gb|DR058444.1|DR058444 RTNIT1_11_G06.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_G06_A029 5', mRNA sequence
Length = 765
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 500 cagcacggcattcgggtgaactgcgt 525
>gb|DR058829.1|DR058829 RTNIT1_14_D09.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_D09_A029 3', mRNA sequence
Length = 626
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 198 cagcacggcattcgggtgaactgcgt 223
>gb|DR058916.1|DR058916 RTNIT1_14_D09.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_D09_A029 5', mRNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 512 cagcacggcattcgggtgaactgcgt 537
>gb|DR078833.1|DR078833 RTFEPL1_7_D07.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_7_D07_A029 3', mRNA sequence
Length = 868
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 321 cagcacggcattcgggtgaactgcgt 296
>gb|DR078907.1|DR078907 RTFEPL1_7_D07.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_7_D07_A029 5', mRNA sequence
Length = 835
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 503 cagcacggcattcgggtgaactgcgt 478
>gb|DR088948.1|DR088948 RTAL1_5_D08.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_D08_A029 5', mRNA sequence
Length = 821
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 501 cagcacggcattcgggtgaactgcgt 526
>gb|DR089483.1|DR089483 RTAL1_9_B01.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_9_B01_A029 3', mRNA sequence
Length = 764
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 215 cagcacggcattcgggtgaactgcgt 190
>gb|DR110044.1|DR110044 RTS1_7_C01.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_7_C01_A029 3', mRNA sequence
Length = 660
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 215 cagcacggcattcgggtgaactgcgt 240
>gb|DR110048.1|DR110048 RTS1_7_D01.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_7_D01_A029 3', mRNA sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 132 cagcacggcattcgggtgaactgcgt 157
>gb|DR160268.1|DR160268 RTFE1_5_B07.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_5_B07_A029 3', mRNA sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 235 cagcacggcattcgggtgaactgcgt 260
>gb|DR163899.1|DR163899 RTFE1_45_D04.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_45_D04_A029 5', mRNA sequence
Length = 852
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 524 cagcacggcattcgggtgaactgcgt 549
>gb|DR179154.1|DR179154 RTMNUT1_16_G08.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_G08_A029 3', mRNA sequence
Length = 781
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 340 cagcacggcattcgggtgaactgcgt 365
>gb|DR179233.1|DR179233 RTMNUT1_16_G08.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_G08_A029 5', mRNA sequence
Length = 671
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 501 cagcacggcattcgggtgaactgcgt 526
>gb|DR181295.1|DR181295 RTMNUT1_38_B03.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_38_B03_A029 3', mRNA sequence
Length = 762
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 321 cagcacggcattcgggtgaactgcgt 346
>gb|DR181370.1|DR181370 RTMNUT1_38_B03.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_38_B03_A029 5', mRNA sequence
Length = 734
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 481 cagcacggcattcgggtgaactgcgt 506
>gb|DR181968.1|DR181968 RTMNUT1_42_D02.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_42_D02_A029 3', mRNA sequence
Length = 889
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 459 cagcacggcattcgggtgaactgcgt 484
>gb|DR182052.1|DR182052 RTMNUT1_42_D02.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_42_D02_A029 5', mRNA sequence
Length = 854
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 394 cagcacggcattcgcgtgaactgcgt 419
|||||||||||||| |||||||||||
Sbjct: 518 cagcacggcattcgggtgaactgcgt 543
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,277
Number of Sequences: 355925
Number of extensions: 77277
Number of successful extensions: 19134
Number of sequences better than 0.5: 59
Number of HSP's better than 0.5 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18997
Number of HSP's gapped (non-prelim): 137
length of query: 958
length of database: 217,277,237
effective HSP length: 19
effective length of query: 939
effective length of database: 210,514,662
effective search space: 197673267618
effective search space used: 197673267618
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)