BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL35a05.yg.2.1
(567 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP004789.3| Oryza sativa (japonica cultivar-group) geno... 287 3e-075
dbj|AP005778.3| Oryza sativa (japonica cultivar-group) geno... 287 3e-075
gb|AACV01004078.1| Oryza sativa (japonica cultivar-group) c... 287 3e-075
ref|XM_465291.1| Oryza sativa (japonica cultivar-group), mRNA 287 3e-075
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 287 3e-075
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 287 3e-075
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 287 3e-075
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 287 3e-075
gb|AQ258518.1|AQ258518 nbxb0020D06f CUGI Rice BAC Library O... 274 5e-071
gb|CB685927.1|CB685927 OSJNEf16M10.f OSJNEf Oryza sativa (j... 206 9e-051
>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0476C12
Length = 157570
Score = 287 bits (145), Expect = 3e-075
Identities = 283/333 (84%)
Strand = Plus / Minus
Query: 101 atctgaagaggattcctgatcatcagttgtatcaccagtgaggcgaccaggaagaagtcc 160
|||||| ||||| ||||||||||||| ||| ||||| ||||||| ||||||||| || |
Sbjct: 123668 atctgatgaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggct 123609
Query: 161 tatcttatgcannnttaaaatacaatctattatgttcctccatccactgcgtatgtgatc 220
||| ||||||| ||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 123608 tattttatgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatc 123549
Query: 221 accataagcagttgctatagtgaaaacagcttctgttgccatcctagctttggtatcctc 280
||||| || |||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 123548 accatgagtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctc 123489
Query: 281 cccgaaaactattacaggatcatcaatgtaggaagtgttcaacaaagtagtgaatttaga 340
|||||| | |||||||||||| ||| ||||||||||||| ||| || ||||| ||| |
Sbjct: 123488 accgaaagttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttaca 123429
Query: 341 tagtgccacaacaagatcattcagaacatcatcaagatgatagnnnnnngccagtttcgc 400
||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct: 123428 tagtgccacaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgc 123369
Query: 401 caccgatagnnnaccatcaatgcatcctgtaag 433
||| ||||| ||||| |||||||||||||||
Sbjct: 123368 cactgatagaaaaccattaatgcatcctgtaag 123336
>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0042G06
Length = 123571
Score = 287 bits (145), Expect = 3e-075
Identities = 283/333 (84%)
Strand = Plus / Minus
Query: 101 atctgaagaggattcctgatcatcagttgtatcaccagtgaggcgaccaggaagaagtcc 160
|||||| ||||| ||||||||||||| ||| ||||| ||||||| ||||||||| || |
Sbjct: 17121 atctgatgaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggct 17062
Query: 161 tatcttatgcannnttaaaatacaatctattatgttcctccatccactgcgtatgtgatc 220
||| ||||||| ||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 17061 tattttatgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatc 17002
Query: 221 accataagcagttgctatagtgaaaacagcttctgttgccatcctagctttggtatcctc 280
||||| || |||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 17001 accatgagtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctc 16942
Query: 281 cccgaaaactattacaggatcatcaatgtaggaagtgttcaacaaagtagtgaatttaga 340
|||||| | |||||||||||| ||| ||||||||||||| ||| || ||||| ||| |
Sbjct: 16941 accgaaagttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttaca 16882
Query: 341 tagtgccacaacaagatcattcagaacatcatcaagatgatagnnnnnngccagtttcgc 400
||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct: 16881 tagtgccacaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgc 16822
Query: 401 caccgatagnnnaccatcaatgcatcctgtaag 433
||| ||||| ||||| |||||||||||||||
Sbjct: 16821 cactgatagaaaaccattaatgcatcctgtaag 16789
>gb|AACV01004078.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004078, whole
genome shotgun sequence
Length = 22546
Score = 287 bits (145), Expect = 3e-075
Identities = 283/333 (84%)
Strand = Plus / Minus
Query: 101 atctgaagaggattcctgatcatcagttgtatcaccagtgaggcgaccaggaagaagtcc 160
|||||| ||||| ||||||||||||| ||| ||||| ||||||| ||||||||| || |
Sbjct: 10318 atctgatgaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggct 10259
Query: 161 tatcttatgcannnttaaaatacaatctattatgttcctccatccactgcgtatgtgatc 220
||| ||||||| ||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 10258 tattttatgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatc 10199
Query: 221 accataagcagttgctatagtgaaaacagcttctgttgccatcctagctttggtatcctc 280
||||| || |||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 10198 accatgagtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctc 10139
Query: 281 cccgaaaactattacaggatcatcaatgtaggaagtgttcaacaaagtagtgaatttaga 340
|||||| | |||||||||||| ||| ||||||||||||| ||| || ||||| ||| |
Sbjct: 10138 accgaaagttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttaca 10079
Query: 341 tagtgccacaacaagatcattcagaacatcatcaagatgatagnnnnnngccagtttcgc 400
||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct: 10078 tagtgccacaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgc 10019
Query: 401 caccgatagnnnaccatcaatgcatcctgtaag 433
||| ||||| ||||| |||||||||||||||
Sbjct: 10018 cactgatagaaaaccattaatgcatcctgtaag 9986
>ref|XM_465291.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 4275
Score = 287 bits (145), Expect = 3e-075
Identities = 283/333 (84%)
Strand = Plus / Minus
Query: 101 atctgaagaggattcctgatcatcagttgtatcaccagtgaggcgaccaggaagaagtcc 160
|||||| ||||| ||||||||||||| ||| ||||| ||||||| ||||||||| || |
Sbjct: 2703 atctgatgaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggct 2644
Query: 161 tatcttatgcannnttaaaatacaatctattatgttcctccatccactgcgtatgtgatc 220
||| ||||||| ||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 2643 tattttatgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatc 2584
Query: 221 accataagcagttgctatagtgaaaacagcttctgttgccatcctagctttggtatcctc 280
||||| || |||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 2583 accatgagtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctc 2524
Query: 281 cccgaaaactattacaggatcatcaatgtaggaagtgttcaacaaagtagtgaatttaga 340
|||||| | |||||||||||| ||| ||||||||||||| ||| || ||||| ||| |
Sbjct: 2523 accgaaagttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttaca 2464
Query: 341 tagtgccacaacaagatcattcagaacatcatcaagatgatagnnnnnngccagtttcgc 400
||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct: 2463 tagtgccacaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgc 2404
Query: 401 caccgatagnnnaccatcaatgcatcctgtaag 433
||| ||||| ||||| |||||||||||||||
Sbjct: 2403 cactgatagaaaaccattaatgcatcctgtaag 2371
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 287 bits (145), Expect = 3e-075
Identities = 283/333 (84%)
Strand = Plus / Minus
Query: 101 atctgaagaggattcctgatcatcagttgtatcaccagtgaggcgaccaggaagaagtcc 160
|||||| ||||| ||||||||||||| ||| ||||| ||||||| ||||||||| || |
Sbjct: 7180043 atctgatgaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggct 7179984
Query: 161 tatcttatgcannnttaaaatacaatctattatgttcctccatccactgcgtatgtgatc 220
||| ||||||| ||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 7179983 tattttatgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatc 7179924
Query: 221 accataagcagttgctatagtgaaaacagcttctgttgccatcctagctttggtatcctc 280
||||| || |||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 7179923 accatgagtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctc 7179864
Query: 281 cccgaaaactattacaggatcatcaatgtaggaagtgttcaacaaagtagtgaatttaga 340
|||||| | |||||||||||| ||| ||||||||||||| ||| || ||||| ||| |
Sbjct: 7179863 accgaaagttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttaca 7179804
Query: 341 tagtgccacaacaagatcattcagaacatcatcaagatgatagnnnnnngccagtttcgc 400
||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct: 7179803 tagtgccacaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgc 7179744
Query: 401 caccgatagnnnaccatcaatgcatcctgtaag 433
||| ||||| ||||| |||||||||||||||
Sbjct: 7179743 cactgatagaaaaccattaatgcatcctgtaag 7179711
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 287 bits (145), Expect = 3e-075
Identities = 283/333 (84%)
Strand = Plus / Minus
Query: 101 atctgaagaggattcctgatcatcagttgtatcaccagtgaggcgaccaggaagaagtcc 160
|||||| ||||| ||||||||||||| ||| ||||| ||||||| ||||||||| || |
Sbjct: 13100640 atctgatgaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggct 13100581
Query: 161 tatcttatgcannnttaaaatacaatctattatgttcctccatccactgcgtatgtgatc 220
||| ||||||| ||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 13100580 tattttatgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatc 13100521
Query: 221 accataagcagttgctatagtgaaaacagcttctgttgccatcctagctttggtatcctc 280
||||| || |||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 13100520 accatgagtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctc 13100461
Query: 281 cccgaaaactattacaggatcatcaatgtaggaagtgttcaacaaagtagtgaatttaga 340
|||||| | |||||||||||| ||| ||||||||||||| ||| || ||||| ||| |
Sbjct: 13100460 accgaaagttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttaca 13100401
Query: 341 tagtgccacaacaagatcattcagaacatcatcaagatgatagnnnnnngccagtttcgc 400
||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct: 13100400 tagtgccacaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgc 13100341
Query: 401 caccgatagnnnaccatcaatgcatcctgtaag 433
||| ||||| ||||| |||||||||||||||
Sbjct: 13100340 cactgatagaaaaccattaatgcatcctgtaag 13100308
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 287 bits (145), Expect = 3e-075
Identities = 283/333 (84%)
Strand = Plus / Minus
Query: 101 atctgaagaggattcctgatcatcagttgtatcaccagtgaggcgaccaggaagaagtcc 160
|||||| ||||| ||||||||||||| ||| ||||| ||||||| ||||||||| || |
Sbjct: 13100640 atctgatgaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggct 13100581
Query: 161 tatcttatgcannnttaaaatacaatctattatgttcctccatccactgcgtatgtgatc 220
||| ||||||| ||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 13100580 tattttatgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatc 13100521
Query: 221 accataagcagttgctatagtgaaaacagcttctgttgccatcctagctttggtatcctc 280
||||| || |||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 13100520 accatgagtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctc 13100461
Query: 281 cccgaaaactattacaggatcatcaatgtaggaagtgttcaacaaagtagtgaatttaga 340
|||||| | |||||||||||| ||| ||||||||||||| ||| || ||||| ||| |
Sbjct: 13100460 accgaaagttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttaca 13100401
Query: 341 tagtgccacaacaagatcattcagaacatcatcaagatgatagnnnnnngccagtttcgc 400
||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct: 13100400 tagtgccacaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgc 13100341
Query: 401 caccgatagnnnaccatcaatgcatcctgtaag 433
||| ||||| ||||| |||||||||||||||
Sbjct: 13100340 cactgatagaaaaccattaatgcatcctgtaag 13100308
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 287 bits (145), Expect = 3e-075
Identities = 283/333 (84%)
Strand = Plus / Minus
Query: 101 atctgaagaggattcctgatcatcagttgtatcaccagtgaggcgaccaggaagaagtcc 160
|||||| ||||| ||||||||||||| ||| ||||| ||||||| ||||||||| || |
Sbjct: 13147091 atctgatgaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggct 13147032
Query: 161 tatcttatgcannnttaaaatacaatctattatgttcctccatccactgcgtatgtgatc 220
||| ||||||| ||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 13147031 tattttatgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatc 13146972
Query: 221 accataagcagttgctatagtgaaaacagcttctgttgccatcctagctttggtatcctc 280
||||| || |||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 13146971 accatgagtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctc 13146912
Query: 281 cccgaaaactattacaggatcatcaatgtaggaagtgttcaacaaagtagtgaatttaga 340
|||||| | |||||||||||| ||| ||||||||||||| ||| || ||||| ||| |
Sbjct: 13146911 accgaaagttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttaca 13146852
Query: 341 tagtgccacaacaagatcattcagaacatcatcaagatgatagnnnnnngccagtttcgc 400
||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct: 13146851 tagtgccacaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgc 13146792
Query: 401 caccgatagnnnaccatcaatgcatcctgtaag 433
||| ||||| ||||| |||||||||||||||
Sbjct: 13146791 cactgatagaaaaccattaatgcatcctgtaag 13146759
>gb|AQ258518.1|AQ258518 nbxb0020D06f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0020D06f, DNA sequence
Length = 783
Score = 274 bits (138), Expect = 5e-071
Identities = 283/334 (84%), Gaps = 1/334 (0%)
Strand = Plus / Plus
Query: 101 atctgaagaggattcctgatcatcagttgtatcac-cagtgaggcgaccaggaagaagtc 159
|||||| ||||| ||||||||||||| ||| |||| | ||||||| ||||||||| || |
Sbjct: 103 atctgatgaggactcctgatcatcagctgtgtcactcggtgaggcaaccaggaagtaggc 162
Query: 160 ctatcttatgcannnttaaaatacaatctattatgttcctccatccactgcgtatgtgat 219
||| ||||||| ||||||| ||||||| |||||||||||| ||||||||||||||||
Sbjct: 163 ttattttatgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgat 222
Query: 220 caccataagcagttgctatagtgaaaacagcttctgttgccatcctagctttggtatcct 279
|||||| || |||||||||||| |||||||| || |||||||| ||||| ||||| ||||
Sbjct: 223 caccatgagtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcct 282
Query: 280 ccccgaaaactattacaggatcatcaatgtaggaagtgttcaacaaagtagtgaatttag 339
| |||||| | |||||||||||| ||| ||||||||||||| ||| || ||||| |||
Sbjct: 283 caccgaaagttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttac 342
Query: 340 atagtgccacaacaagatcattcagaacatcatcaagatgatagnnnnnngccagtttcg 399
|||||||||||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct: 343 atagtgccacaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcg 402
Query: 400 ccaccgatagnnnaccatcaatgcatcctgtaag 433
|||| ||||| ||||| |||||||||||||||
Sbjct: 403 ccactgatagaaaaccattaatgcatcctgtaag 436
>gb|CB685927.1|CB685927 OSJNEf16M10.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf16M10 5', mRNA sequence
Length = 760
Score = 206 bits (104), Expect = 9e-051
Identities = 191/221 (86%)
Strand = Plus / Minus
Query: 101 atctgaagaggattcctgatcatcagttgtatcaccagtgaggcgaccaggaagaagtcc 160
|||||| ||||| ||||||||||||| ||| ||||| ||||||| ||||||||| || |
Sbjct: 230 atctgatgaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggct 171
Query: 161 tatcttatgcannnttaaaatacaatctattatgttcctccatccactgcgtatgtgatc 220
||| ||||||| ||||||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 170 tattttatgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatc 111
Query: 221 accataagcagttgctatagtgaaaacagcttctgttgccatcctagctttggtatcctc 280
||||| || |||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 110 accatgagtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctc 51
Query: 281 cccgaaaactattacaggatcatcaatgtaggaagtgttca 321
|||||| | |||||||||||| ||| |||||||||||||
Sbjct: 50 accgaaagttgttacaggatcattaatataggaagtgttca 10
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 551,234
Number of Sequences: 438736
Number of extensions: 551234
Number of successful extensions: 8995
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8899
Number of HSP's gapped (non-prelim): 86
length of query: 567
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 546
effective length of database: 2,791,206,460
effective search space: 1523998727160
effective search space used: 1523998727160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)