BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848767.2.1
(1467 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB646666.1|CB646666 OSJNEb09E07.f OSJNEb Oryza sativa (j... 101 1e-018
gb|CB677654.1|CB677654 OSJNEe14N14.f OSJNEe Oryza sativa (j... 101 1e-018
dbj|D90406.1|RICOZA Oryza sativa (japonica cultivar-group) ... 101 1e-018
dbj|AK071913.1| Oryza sativa (japonica cultivar-group) cDNA... 101 1e-018
dbj|AK098910.1| Oryza sativa (japonica cultivar-group) cDNA... 101 1e-018
dbj|AK121500.1| Oryza sativa (japonica cultivar-group) cDNA... 101 1e-018
gb|AACV01010587.1| Oryza sativa (japonica cultivar-group) c... 101 1e-018
ref|XM_474131.1| Oryza sativa (japonica cultivar-group), p... 101 1e-018
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 101 1e-018
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 101 1e-018
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 101 1e-018
emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromoso... 101 1e-018
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 101 1e-018
gb|AU090528.1|AU090528 AU090528 Rice shoot Oryza sativa (ja... 98 2e-017
dbj|AK106508.1| Oryza sativa (japonica cultivar-group) cDNA... 96 7e-017
gb|AY335487.1| Oryza sativa (japonica cultivar-group) cyste... 96 7e-017
gb|AC129716.3| Oryza sativa (japonica cultivar-group) chrom... 96 7e-017
gb|AACV01010747.1| Oryza sativa (japonica cultivar-group) c... 96 7e-017
ref|NT_079870.2| Oryza sativa (japonica cultivar-group) 96 7e-017
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 96 7e-017
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 96 7e-017
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 96 7e-017
gb|CB682399.1|CB682399 OSJNEf09L02.f OSJNEf Oryza sativa (j... 94 3e-016
gb|CB652545.1|CB652545 OSJNEc02K12.f OSJNEc Oryza sativa (j... 90 4e-015
dbj|AP005711.1| Oryza sativa (japonica cultivar-group) chro... 90 4e-015
ref|NT_107078.1| Oryza sativa (japonica cultivar-group) 90 4e-015
gb|AACV01027690.1| Oryza sativa (japonica cultivar-group) C... 90 4e-015
dbj|AP006170.2| Oryza sativa (japonica cultivar-group) geno... 90 4e-015
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 90 4e-015
gb|AACV01000451.1| Oryza sativa (japonica cultivar-group) c... 80 4e-012
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 80 4e-012
ref|NM_188466.1| Oryza sativa (japonica cultivar-group), Oz... 80 4e-012
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 80 4e-012
dbj|AP001633.2| Oryza sativa (japonica cultivar-group) geno... 80 4e-012
dbj|AP002861.2| Oryza sativa (japonica cultivar-group) geno... 80 4e-012
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 80 4e-012
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 80 4e-012
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 80 4e-012
dbj|D76415.1| Rice seedling mRNA for cysteine proteinase, c... 76 6e-011
gb|AC091089.1|AC091089 Oryza sativa (japonica cultivar-grou... 76 6e-011
dbj|AP003380.3| Oryza sativa (japonica cultivar-group) geno... 76 6e-011
gb|AACV01002890.1| Oryza sativa (japonica cultivar-group) c... 76 6e-011
ref|XM_463580.1| Oryza sativa (japonica cultivar-group), p... 76 6e-011
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 76 6e-011
dbj|AP006531.3| Oryza sativa (japonica cultivar-group) geno... 76 6e-011
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 76 6e-011
gb|CA998169.1|CA998169 S345A_B07 Rice cold stress germinati... 74 2e-010
dbj|AK061729.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
dbj|AK071733.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
gb|AACV01020548.1| Oryza sativa (japonica cultivar-group) c... 74 2e-010
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 74 2e-010
dbj|AP002869.1| Oryza sativa (japonica cultivar-group) geno... 72 9e-010
dbj|AP003143.2| Oryza sativa (japonica cultivar-group) geno... 72 9e-010
gb|AACV01000934.1| Oryza sativa (japonica cultivar-group) c... 72 9e-010
ref|NM_183860.1| Oryza sativa (japonica cultivar-group), p... 72 9e-010
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 72 9e-010
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 72 9e-010
dbj|AK059528.1| Oryza sativa (japonica cultivar-group) cDNA... 70 4e-009
dbj|AK105881.1| Oryza sativa (japonica cultivar-group) cDNA... 70 4e-009
dbj|AK106011.1| Oryza sativa (japonica cultivar-group) cDNA... 70 4e-009
dbj|AK107506.1| Oryza sativa (japonica cultivar-group) cDNA... 70 4e-009
dbj|AK119182.1| Oryza sativa (japonica cultivar-group) cDNA... 70 4e-009
gb|AACV01003113.1| Oryza sativa (japonica cultivar-group) c... 70 4e-009
gb|AACV01010644.1| Oryza sativa (japonica cultivar-group) c... 70 4e-009
ref|NM_189456.1| Oryza sativa (japonica cultivar-group), p... 70 4e-009
ref|XM_474296.1| Oryza sativa (japonica cultivar-group), p... 70 4e-009
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 70 4e-009
dbj|AP003277.2| Oryza sativa (japonica cultivar-group) geno... 70 4e-009
emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromoso... 70 4e-009
gb|D16051.1|D16051 RICC2501A Rice callus Oryza sativa (japo... 68 1e-008
gb|AU166714.1|AU166714 AU166714 Rice callus (2001) Oryza sa... 66 6e-008
gb|CB645294.1|CB645294 OSJNEb06O03.f OSJNEb Oryza sativa (j... 66 6e-008
gb|CB645295.1|CB645295 OSJNEb06O03.r OSJNEb Oryza sativa (j... 66 6e-008
gb|CB682400.1|CB682400 OSJNEf09L02.r OSJNEf Oryza sativa (j... 66 6e-008
dbj|AK108733.1| Oryza sativa (japonica cultivar-group) cDNA... 66 6e-008
dbj|AP005396.3| Oryza sativa (japonica cultivar-group) geno... 66 6e-008
gb|AACV01020542.1| Oryza sativa (japonica cultivar-group) c... 66 6e-008
gb|AACV01020549.1| Oryza sativa (japonica cultivar-group) c... 66 6e-008
gb|C72666.1|C72666 C72666 Rice panicle at flowering stage O... 64 2e-007
gb|AC108757.1| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
dbj|AK072767.1| Oryza sativa (japonica cultivar-group) cDNA... 64 2e-007
dbj|AK099197.1| Oryza sativa (japonica cultivar-group) cDNA... 64 2e-007
gb|AACV01020338.1| Oryza sativa (japonica cultivar-group) c... 64 2e-007
gb|C96856.1|C96856 C96856 Rice callus Oryza sativa (japonic... 62 9e-007
gb|AU065451.1|AU065451 AU065451 Rice root Oryza sativa (jap... 62 9e-007
gb|AACV01008740.1| Oryza sativa (japonica cultivar-group) c... 62 9e-007
ref|XM_474851.1| Oryza sativa (japonica cultivar-group), p... 62 9e-007
ref|NT_107203.1| Oryza sativa (japonica cultivar-group) 62 9e-007
gb|CH401185.1| Oryza sativa (japonica cultivar-group) chrom... 62 9e-007
emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromoso... 62 9e-007
gb|AY781344.1| Oryza sativa (japonica cultivar-group) putat... 62 9e-007
gb|AU092094.1|AU092094 AU092094 Rice callus Oryza sativa (j... 60 4e-006
gb|AU182034.1|AU182034 AU182034 Rice callus (2001) Oryza sa... 60 4e-006
gb|CA997922.1|CA997922 S234C1_G02 Rice cold stress germinat... 60 4e-006
gb|AACV01020554.1| Oryza sativa (japonica cultivar-group) c... 60 4e-006
dbj|AP006171.2| Oryza sativa (japonica cultivar-group) geno... 60 4e-006
gb|CB656442.1|CB656442 OSJNEc10M19.f OSJNEc Oryza sativa (j... 56 6e-005
gb|CF323898.1|CF323898 HDN--05-B01.g1 OsHDAC1-overexpressin... 56 6e-005
dbj|AB004648.1| Oryza sativa (japonica cultivar-group) RepA... 56 6e-005
dbj|AK071495.1| Oryza sativa (japonica cultivar-group) cDNA... 56 6e-005
gb|AC130605.3| Oryza sativa (japonica cultivar-group) chrom... 56 6e-005
dbj|AP004037.3| Oryza sativa (japonica cultivar-group) geno... 56 6e-005
ref|NT_107115.1| Oryza sativa (japonica cultivar-group) 56 6e-005
gb|AC113332.2| Oryza sativa (japonica cultivar-group) chrom... 56 6e-005
gb|AC108500.3| Oryza sativa (japonica cultivar-group) chrom... 56 6e-005
dbj|AP003852.2| Oryza sativa (japonica cultivar-group) geno... 56 6e-005
gb|AACV01001024.1| Oryza sativa (japonica cultivar-group) c... 56 6e-005
gb|AACV01001025.1| Oryza sativa (japonica cultivar-group) c... 56 6e-005
gb|AACV01012356.1| Oryza sativa (japonica cultivar-group) c... 56 6e-005
gb|AACV01012493.1| Oryza sativa (japonica cultivar-group) c... 56 6e-005
gb|AACV01022682.1| Oryza sativa (japonica cultivar-group) c... 56 6e-005
gb|AACV01027990.1| Oryza sativa (japonica cultivar-group) C... 56 6e-005
ref|NM_183998.1| Oryza sativa (japonica cultivar-group), p... 56 6e-005
ref|NM_184000.1| Oryza sativa (japonica cultivar-group), p... 56 6e-005
ref|XM_469786.1| Oryza sativa (japonica cultivar-group), mRNA 56 6e-005
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 56 6e-005
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 56 6e-005
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 56 6e-005
ref|NM_188465.1| Oryza sativa (japonica cultivar-group), Oz... 56 6e-005
gb|CH401261.1| Oryza sativa (japonica cultivar-group) chrom... 56 6e-005
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 56 6e-005
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 56 6e-005
emb|X80876.1|OSCYSPRO O.sativa mRNA for cysteine protease 56 6e-005
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 56 6e-005
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 56 6e-005
gb|AC145324.3| Oryza sativa (japonica cultivar-group) chrom... 56 6e-005
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 56 6e-005
gb|AU092283.1|AU092283 AU092283 Rice callus Oryza sativa (j... 54 2e-004
gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 gen... 52 9e-004
gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 ... 52 9e-004
gb|AACV01007933.1| Oryza sativa (japonica cultivar-group) c... 52 9e-004
ref|NT_107186.1| Oryza sativa (japonica cultivar-group) 52 9e-004
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 52 9e-004
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 52 9e-004
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 52 9e-004
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 52 9e-004
gb|AF377947.3| Oryza sativa (japonica cultivar-group) chrom... 52 9e-004
gb|AU095021.1|AU095021 AU095021 Rice immature leaf includin... 50 0.003
gb|AU183190.1|AU183190 AU183190 Rice immature leaf includin... 50 0.003
gb|AU197384.1|AU197384 AU197384 Rice cDNA from immature lea... 50 0.003
gb|AU223258.1|AU223258 AU223258 Rice shoot Oryza sativa (ja... 50 0.003
gb|CF280609.1|CF280609 14ETL--07-F15.g1 Rice etiolated leaf... 50 0.003
gb|CF292707.1|CF292707 30DGS--01-K03.b1 Rice leaf plasmid c... 50 0.003
gb|CF296380.1|CF296380 30DGS--06-L12.g1 Rice leaf plasmid c... 50 0.003
gb|CF300341.1|CF300341 7LEAF--04-L06.b1 Rice leaf plasmid c... 50 0.003
gb|CF301587.1|CF301587 7LEAF--06-I04.b1 Rice leaf plasmid c... 50 0.003
gb|CF314903.1|CF314903 HD--03-J23.g1 OsHDAC1-overexpressing... 50 0.003
gb|CF320905.1|CF320905 HD--11-P10.g1 OsHDAC1-overexpressing... 50 0.003
gb|CV723114.1|CV723114 root--02-I17.g1 Rice root lambda pha... 50 0.003
gb|CV726519.1|CV726519 14Salt--04-D10.g1 Salt treated rice ... 50 0.003
gb|CV726573.1|CV726573 14Salt--04-E16.g1 Salt treated rice ... 50 0.003
gb|CV728889.1|CV728889 FLO--01-H04.g1 Rice flower lambda ph... 50 0.003
gb|CV729566.1|CV729566 FLO--02-J06.g1 Rice flower lambda ph... 50 0.003
gb|CV729656.1|CV729656 FLO--02-M04.b1 Rice flower lambda ph... 50 0.003
gb|CV730891.1|CV730891 FLO--04-K16.b1 Rice flower lambda ph... 50 0.003
gb|CV731375.1|CV731375 FLO--05-G04.g1 Rice flower lambda ph... 50 0.003
gb|CX728877.1|CX728877 OSJNEf14O23.r OSJNEf Oryza sativa (j... 50 0.003
dbj|AK059098.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
dbj|AK070448.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
gb|AC073166.7| Oryza sativa chromosome 10 BAC OSJNBb0064P21... 50 0.003
gb|AC096782.6| Oryza sativa chromosome 10 BAC OSJNBa0025B05... 50 0.003
gb|AACV01001819.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01022013.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
ref|NM_192771.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 50 0.003
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|C19617.2|C19617 C19617 Rice panicle at ripening stage Or... 48 0.014
dbj|AK071619.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.014
emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC O... 48 0.014
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 48 0.014
dbj|AP003764.3| Oryza sativa (japonica cultivar-group) geno... 48 0.014
gb|AACV01001023.1| Oryza sativa (japonica cultivar-group) c... 48 0.014
gb|AACV01024705.1| Oryza sativa (japonica cultivar-group) c... 48 0.014
ref|NM_183997.1| Oryza sativa (japonica cultivar-group), p... 48 0.014
ref|NM_184003.1| Oryza sativa (japonica cultivar-group), p... 48 0.014
gb|CH401275.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.014
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.014
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 48 0.014
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.014
gb|D46274.1|D46274 RICS10840A Rice green shoot Oryza sativa... 46 0.054
dbj|AP003839.1| Oryza sativa (japonica cultivar-group) chro... 46 0.054
dbj|AK063422.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.054
dbj|AK109160.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.054
gb|AACV01016188.1| Oryza sativa (japonica cultivar-group) c... 46 0.054
ref|NM_183859.1| Oryza sativa (japonica cultivar-group), p... 46 0.054
ref|NM_187324.2| Oryza sativa (japonica cultivar-group), mRNA 46 0.054
dbj|AP004299.2| Oryza sativa (japonica cultivar-group) geno... 46 0.054
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 46 0.054
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.054
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.054
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 46 0.054
dbj|AB157484.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.21
gb|C96846.1|C96846 C96846 Rice callus Oryza sativa (japonic... 44 0.21
gb|CB643267.1|CB643267 OSJNEb03N19.f OSJNEb Oryza sativa (j... 44 0.21
gb|CB643270.1|CB643270 OSJNEb03N21.f OSJNEb Oryza sativa (j... 44 0.21
gb|CB645335.1|CB645335 OSJNEb06P02.f OSJNEb Oryza sativa (j... 44 0.21
gb|CB671635.1|CB671635 OSJNEe05E21.f OSJNEe Oryza sativa (j... 44 0.21
gb|CV726518.1|CV726518 14Salt--04-D10.b1 Salt treated rice ... 44 0.21
gb|CV734256.1|CV734256 FLO--09-I16.b1 Rice flower lambda ph... 44 0.21
dbj|AK067433.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.21
dbj|AK101833.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.21
dbj|AK105719.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.21
dbj|AK106834.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.21
dbj|AK119887.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.21
dbj|AP004119.3| Oryza sativa (japonica cultivar-group) geno... 44 0.21
dbj|AP004774.3| Oryza sativa (japonica cultivar-group) geno... 44 0.21
emb|AL732642.4|CNS08C9H Oryza sativa chromosome 12, . BAC O... 44 0.21
gb|AC130601.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC O... 44 0.21
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 44 0.21
ref|NT_107238.1| Oryza sativa (japonica cultivar-group) 44 0.21
dbj|AP005723.2| Oryza sativa (japonica cultivar-group) geno... 44 0.21
dbj|AP004818.3| Oryza sativa (japonica cultivar-group) geno... 44 0.21
dbj|AP002866.1| Oryza sativa (japonica cultivar-group) geno... 44 0.21
gb|AACV01001214.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
gb|AACV01005431.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
gb|AACV01011286.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
gb|AACV01012535.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
gb|AACV01014227.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
gb|AACV01017230.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
gb|AACV01020550.1| Oryza sativa (japonica cultivar-group) c... 44 0.21
dbj|AP004613.3| Oryza sativa (japonica cultivar-group) geno... 44 0.21
ref|NM_189239.1| Oryza sativa (japonica cultivar-group), p... 44 0.21
ref|XM_467832.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.21
ref|XM_472565.1| Oryza sativa (japonica cultivar-group), p... 44 0.21
ref|XM_475664.1| Oryza sativa (japonica cultivar-group), p... 44 0.21
ref|XM_480012.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.21
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 44 0.21
ref|NT_079947.2| Oryza sativa (japonica cultivar-group) 44 0.21
ref|NT_107217.1| Oryza sativa (japonica cultivar-group) 44 0.21
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 44 0.21
dbj|AP003876.3| Oryza sativa (japonica cultivar-group) geno... 44 0.21
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.21
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
gb|CH401194.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.21
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.21
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.21
>gb|CB646666.1|CB646666 OSJNEb09E07.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09E07 5', mRNA sequence
Length = 740
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 323 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 264
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 263 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 217
>gb|CB677654.1|CB677654 OSJNEe14N14.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe14N14 5', mRNA sequence
Length = 790
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 348 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 289
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 288 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 242
>dbj|D90406.1|RICOZA Oryza sativa (japonica cultivar-group) mRNA for oryzain alpha,
complete cds
Length = 1929
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 347 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 288
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 287 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 241
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 1023 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 964
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 963 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 907
>dbj|AK071913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065M08, full
insert sequence
Length = 1774
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 367 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 308
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 307 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 261
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 1043 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 984
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 983 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 927
>dbj|AK098910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H09, full
insert sequence
Length = 1753
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 367 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 308
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 307 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 261
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 1043 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 984
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 983 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 927
>dbj|AK121500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022A11, full
insert sequence
Length = 752
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 367 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 308
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 307 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 261
>gb|AACV01010587.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010587, whole
genome shotgun sequence
Length = 31305
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 18860 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 18801
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 18800 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 18754
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 21327 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 21268
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 21267 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 21211
>ref|XM_474131.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1377
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 302 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 243
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 242 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 196
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 978 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 919
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 918 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 862
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 555548 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 555607
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 555608 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 555654
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 553081 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 553140
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 553141 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 553197
Score = 69.9 bits (35), Expect = 4e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 313 gggtaggacgcgtccatggcgatgccgcacttgcccgtgggccggggcacgttgcgcctc 372
||||||||||| ||||||||||||||||||||| ||| || || ||||||||| |
Sbjct: 1636156 gggtaggacgccatcatggcgatgccgcacttgccggtgcgcgcggtgacgttgcgctcc 1636097
Query: 373 atgcggatgtagccggcctcgccccag 399
||||||||||||||| ||||||||||
Sbjct: 1636096 atgcggatgtagccgttctcgccccag 1636070
Score = 63.9 bits (32), Expect = 2e-007
Identities = 116/144 (80%)
Strand = Plus / Minus
Query: 449 tgccgtagcccaccgccgtgacgccgtggtccaggctcgtcccgcatggcccgttgaaga 508
||||||| ||||||||| ||||||||||||||| | || ||||| | ||| |||| |
Sbjct: 1636014 tgccgtaccccaccgccaccacgccgtggtccaggttggtgccgcaccggccggtgaaca 1635955
Query: 509 tgcccgaactgtagtgctggaacgcacgcccgcctgcgtcgatggcgacactgacgggct 568
||| || |||| |||||||| | || ||||| |||||||||||||| ||||||||||
Sbjct: 1635954 cgccggagtcgtagagctggaactcgcggccgccggcgtcgatggcgacgctgacgggct 1635895
Query: 569 ggatcgccaccgcctcctgcagcg 592
|| |||||| |||| ||| ||||
Sbjct: 1635894 ggtgcgccacggccttctggagcg 1635871
Score = 56.0 bits (28), Expect = 6e-005
Identities = 79/96 (82%)
Strand = Plus / Minus
Query: 801 ctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggc 860
|||||||||||||||||||||||| | || || ||||| ||| | ||||| | |||
Sbjct: 1635659 ctcctgctccgacagcgacaccagctcgccggtgacgatcttgttgatgccctccacggc 1635600
Query: 861 cgccaccgccgagaacgcccagcacccaccgcactg 896
|| |||||||||||||||||||| | |||||||||
Sbjct: 1635599 ggcgaccgccgagaacgcccagcagctaccgcactg 1635564
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 10801488 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 10801547
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 10801548 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 10801594
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 10799021 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 10799080
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 10799081 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 10799137
Score = 69.9 bits (35), Expect = 4e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 313 gggtaggacgcgtccatggcgatgccgcacttgcccgtgggccggggcacgttgcgcctc 372
||||||||||| ||||||||||||||||||||| ||| || || ||||||||| |
Sbjct: 11825630 gggtaggacgccatcatggcgatgccgcacttgccggtgcgcgcggtgacgttgcgctcc 11825571
Query: 373 atgcggatgtagccggcctcgccccag 399
||||||||||||||| ||||||||||
Sbjct: 11825570 atgcggatgtagccgttctcgccccag 11825544
Score = 63.9 bits (32), Expect = 2e-007
Identities = 116/144 (80%)
Strand = Plus / Minus
Query: 449 tgccgtagcccaccgccgtgacgccgtggtccaggctcgtcccgcatggcccgttgaaga 508
||||||| ||||||||| ||||||||||||||| | || ||||| | ||| |||| |
Sbjct: 11825488 tgccgtaccccaccgccaccacgccgtggtccaggttggtgccgcaccggccggtgaaca 11825429
Query: 509 tgcccgaactgtagtgctggaacgcacgcccgcctgcgtcgatggcgacactgacgggct 568
||| || |||| |||||||| | || ||||| |||||||||||||| ||||||||||
Sbjct: 11825428 cgccggagtcgtagagctggaactcgcggccgccggcgtcgatggcgacgctgacgggct 11825369
Query: 569 ggatcgccaccgcctcctgcagcg 592
|| |||||| |||| ||| ||||
Sbjct: 11825368 ggtgcgccacggccttctggagcg 11825345
Score = 56.0 bits (28), Expect = 6e-005
Identities = 79/96 (82%)
Strand = Plus / Minus
Query: 801 ctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggc 860
|||||||||||||||||||||||| | || || ||||| ||| | ||||| | |||
Sbjct: 11825134 ctcctgctccgacagcgacaccagctcgccggtgacgatcttgttgatgccctccacggc 11825075
Query: 861 cgccaccgccgagaacgcccagcacccaccgcactg 896
|| |||||||||||||||||||| | |||||||||
Sbjct: 11825074 ggcgaccgccgagaacgcccagcagctaccgcactg 11825039
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 29945587 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 29945646
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 29945647 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 29945693
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 29943120 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 29943179
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 29943180 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 29943236
Score = 69.9 bits (35), Expect = 4e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 313 gggtaggacgcgtccatggcgatgccgcacttgcccgtgggccggggcacgttgcgcctc 372
||||||||||| ||||||||||||||||||||| ||| || || ||||||||| |
Sbjct: 30969729 gggtaggacgccatcatggcgatgccgcacttgccggtgcgcgcggtgacgttgcgctcc 30969670
Query: 373 atgcggatgtagccggcctcgccccag 399
||||||||||||||| ||||||||||
Sbjct: 30969669 atgcggatgtagccgttctcgccccag 30969643
Score = 63.9 bits (32), Expect = 2e-007
Identities = 116/144 (80%)
Strand = Plus / Minus
Query: 449 tgccgtagcccaccgccgtgacgccgtggtccaggctcgtcccgcatggcccgttgaaga 508
||||||| ||||||||| ||||||||||||||| | || ||||| | ||| |||| |
Sbjct: 30969587 tgccgtaccccaccgccaccacgccgtggtccaggttggtgccgcaccggccggtgaaca 30969528
Query: 509 tgcccgaactgtagtgctggaacgcacgcccgcctgcgtcgatggcgacactgacgggct 568
||| || |||| |||||||| | || ||||| |||||||||||||| ||||||||||
Sbjct: 30969527 cgccggagtcgtagagctggaactcgcggccgccggcgtcgatggcgacgctgacgggct 30969468
Query: 569 ggatcgccaccgcctcctgcagcg 592
|| |||||| |||| ||| ||||
Sbjct: 30969467 ggtgcgccacggccttctggagcg 30969444
Score = 61.9 bits (31), Expect = 9e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 850 ccctcgatggccgccaccgccgagaacgcccagca 884
||||| |||||||||||||||||||||||||||||
Sbjct: 4715418 ccctccatggccgccaccgccgagaacgcccagca 4715384
Score = 56.0 bits (28), Expect = 6e-005
Identities = 79/96 (82%)
Strand = Plus / Minus
Query: 801 ctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggc 860
|||||||||||||||||||||||| | || || ||||| ||| | ||||| | |||
Sbjct: 30969233 ctcctgctccgacagcgacaccagctcgccggtgacgatcttgttgatgccctccacggc 30969174
Query: 861 cgccaccgccgagaacgcccagcacccaccgcactg 896
|| |||||||||||||||||||| | |||||||||
Sbjct: 30969173 ggcgaccgccgagaacgcccagcagctaccgcactg 30969138
>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02,
complete sequence
Length = 165745
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 43169 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 43228
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 43229 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 43275
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 40702 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 40761
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 40762 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 40818
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 101 bits (51), Expect = 1e-018
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 33160520 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 33160579
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 33160580 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 33160626
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 33158052 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 33158111
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 33158112 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 33158168
Score = 69.9 bits (35), Expect = 4e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 313 gggtaggacgcgtccatggcgatgccgcacttgcccgtgggccggggcacgttgcgcctc 372
||||||||||| ||||||||||||||||||||| ||| || || ||||||||| |
Sbjct: 34241030 gggtaggacgccatcatggcgatgccgcacttgccggtgcgcgcggtgacgttgcgctcc 34240971
Query: 373 atgcggatgtagccggcctcgccccag 399
||||||||||||||| ||||||||||
Sbjct: 34240970 atgcggatgtagccgttctcgccccag 34240944
Score = 63.9 bits (32), Expect = 2e-007
Identities = 116/144 (80%)
Strand = Plus / Minus
Query: 449 tgccgtagcccaccgccgtgacgccgtggtccaggctcgtcccgcatggcccgttgaaga 508
||||||| ||||||||| ||||||||||||||| | || ||||| | ||| |||| |
Sbjct: 34240888 tgccgtaccccaccgccaccacgccgtggtccaggttggtgccgcaccggccggtgaaca 34240829
Query: 509 tgcccgaactgtagtgctggaacgcacgcccgcctgcgtcgatggcgacactgacgggct 568
||| || |||| |||||||| | || ||||| |||||||||||||| ||||||||||
Sbjct: 34240828 cgccggagtcgtagagctggaactcgcggccgccggcgtcgatggcgacgctgacgggct 34240769
Query: 569 ggatcgccaccgcctcctgcagcg 592
|| |||||| |||| ||| ||||
Sbjct: 34240768 ggtgcgccacggccttctggagcg 34240745
Score = 61.9 bits (31), Expect = 9e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 850 ccctcgatggccgccaccgccgagaacgcccagca 884
||||| |||||||||||||||||||||||||||||
Sbjct: 7212985 ccctccatggccgccaccgccgagaacgcccagca 7212951
Score = 56.0 bits (28), Expect = 6e-005
Identities = 79/96 (82%)
Strand = Plus / Minus
Query: 801 ctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggc 860
|||||||||||||||||||||||| | || || ||||| ||| | ||||| | |||
Sbjct: 34240533 ctcctgctccgacagcgacaccagctcgccggtgacgatcttgttgatgccctccacggc 34240474
Query: 861 cgccaccgccgagaacgcccagcacccaccgcactg 896
|| |||||||||||||||||||| | |||||||||
Sbjct: 34240473 ggcgaccgccgagaacgcccagcagctaccgcactg 34240438
>gb|AU090528.1|AU090528 AU090528 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S0035, mRNA sequence
Length = 357
Score = 97.6 bits (49), Expect = 2e-017
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || ||||||||| |||||||| ||||| |
Sbjct: 177 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgangcggaaggagtgganc 118
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 117 ccggcgtcggcggcggcgttgtgctcgtcgatgtaccggaggttgtc 71
>dbj|AK106508.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G09, full
insert sequence
Length = 1409
Score = 95.6 bits (48), Expect = 7e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcac 848
||||||||| | ||||||||||||||||||| |||||| |||||| |||||||||| |
Sbjct: 661 gcagtcgatcagctcctgctccgacagcgacgtcaggttccccgtcacgatcgcgttgat 602
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | |||||||||| |||||||||||||||
Sbjct: 601 cccctccaccgccgccaccgtcgagaacgcccagca 566
>gb|AY335487.1| Oryza sativa (japonica cultivar-group) cysteine protease CP1 mRNA,
complete cds
Length = 1227
Score = 95.6 bits (48), Expect = 7e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcac 848
||||||||| | ||||||||||||||||||| |||||| |||||| |||||||||| |
Sbjct: 603 gcagtcgatcagctcctgctccgacagcgacgtcaggttccccgtcacgatcgcgttgat 544
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | |||||||||| |||||||||||||||
Sbjct: 543 cccctccaccgccgccaccgtcgagaacgcccagca 508
>gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0068N01,
complete sequence
Length = 152233
Score = 95.6 bits (48), Expect = 7e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcac 848
||||||||| | ||||||||||||||||||| |||||| |||||| |||||||||| |
Sbjct: 117020 gcagtcgatcagctcctgctccgacagcgacgtcaggttccccgtcacgatcgcgttgat 116961
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | |||||||||| |||||||||||||||
Sbjct: 116960 cccctccaccgccgccaccgtcgagaacgcccagca 116925
>gb|AACV01010747.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010747, whole
genome shotgun sequence
Length = 81998
Score = 95.6 bits (48), Expect = 7e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcac 848
||||||||| | ||||||||||||||||||| |||||| |||||| |||||||||| |
Sbjct: 80036 gcagtcgatcagctcctgctccgacagcgacgtcaggttccccgtcacgatcgcgttgat 79977
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | |||||||||| |||||||||||||||
Sbjct: 79976 cccctccaccgccgccaccgtcgagaacgcccagca 79941
>ref|NT_079870.2| Oryza sativa (japonica cultivar-group)
Length = 867822
Score = 95.6 bits (48), Expect = 7e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcac 848
||||||||| | ||||||||||||||||||| |||||| |||||| |||||||||| |
Sbjct: 455373 gcagtcgatcagctcctgctccgacagcgacgtcaggttccccgtcacgatcgcgttgat 455314
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | |||||||||| |||||||||||||||
Sbjct: 455313 cccctccaccgccgccaccgtcgagaacgcccagca 455278
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028
genomic scaffold, whole genome shotgun sequence
Length = 7678539
Score = 95.6 bits (48), Expect = 7e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcac 848
||||||||| | ||||||||||||||||||| |||||| |||||| |||||||||| |
Sbjct: 446071 gcagtcgatcagctcctgctccgacagcgacgtcaggttccccgtcacgatcgcgttgat 446012
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | |||||||||| |||||||||||||||
Sbjct: 446011 cccctccaccgccgccaccgtcgagaacgcccagca 445976
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 95.6 bits (48), Expect = 7e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcac 848
||||||||| | ||||||||||||||||||| |||||| |||||| |||||||||| |
Sbjct: 446071 gcagtcgatcagctcctgctccgacagcgacgtcaggttccccgtcacgatcgcgttgat 446012
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | |||||||||| |||||||||||||||
Sbjct: 446011 cccctccaccgccgccaccgtcgagaacgcccagca 445976
Score = 56.0 bits (28), Expect = 6e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 785 cgtcgcagtcgatgatctcctgctccgacagcgacaccag 824
|||||||||| | || ||||||||||||||||||||||||
Sbjct: 24154803 cgtcgcagtctacgagctcctgctccgacagcgacaccag 24154764
Score = 56.0 bits (28), Expect = 6e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 785 cgtcgcagtcgatgatctcctgctccgacagcgacaccag 824
|||||||||| | || ||||||||||||||||||||||||
Sbjct: 22287349 cgtcgcagtctacgagctcctgctccgacagcgacaccag 22287310
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 901 tggtccttgacctcggtgacggcgcc 926
||||||||||||| ||||||||||||
Sbjct: 24703204 tggtccttgaccttggtgacggcgcc 24703179
Score = 44.1 bits (22), Expect = 0.21
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 785 cgtcgcagtcgatgatctcctgctccgacagcga 818
|||||||||||| | ||||||||||||||||||
Sbjct: 8602824 cgtcgcagtcgaccagctcctgctccgacagcga 8602791
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
complete sequence
Length = 29737217
Score = 95.6 bits (48), Expect = 7e-017
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 789 gcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcac 848
||||||||| | ||||||||||||||||||| |||||| |||||| |||||||||| |
Sbjct: 455373 gcagtcgatcagctcctgctccgacagcgacgtcaggttccccgtcacgatcgcgttgat 455314
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
|||||| | |||||||||| |||||||||||||||
Sbjct: 455313 cccctccaccgccgccaccgtcgagaacgcccagca 455278
Score = 56.0 bits (28), Expect = 6e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 785 cgtcgcagtcgatgatctcctgctccgacagcgacaccag 824
|||||||||| | || ||||||||||||||||||||||||
Sbjct: 24434122 cgtcgcagtctacgagctcctgctccgacagcgacaccag 24434083
Score = 56.0 bits (28), Expect = 6e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 785 cgtcgcagtcgatgatctcctgctccgacagcgacaccag 824
|||||||||| | || ||||||||||||||||||||||||
Sbjct: 22607164 cgtcgcagtctacgagctcctgctccgacagcgacaccag 22607125
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 901 tggtccttgacctcggtgacggcgcc 926
||||||||||||| ||||||||||||
Sbjct: 24954348 tggtccttgaccttggtgacggcgcc 24954323
>gb|CB682399.1|CB682399 OSJNEf09L02.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf09L02 5', mRNA sequence
Length = 482
Score = 93.7 bits (47), Expect = 3e-016
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 1039 cggtactcctccagggtgaggtcggcgaagggggtgaggccgaggcggaaggtgtggagc 1098
||||||||||| |||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct: 107 cggtactcctcgttggtgaggtcggcgaagcggttgaggccgaggcggaaggagtggacc 48
Query: 1099 ccagcgtccgcctccgcgttgtgcgcgtcgatgtaccgaaggttgtc 1145
|| ||||| || | ||||||||| ||| ||||||||| ||||||||
Sbjct: 47 ccggcgtcggcggcggcgttgtgctcgtagatgtaccggaggttgtc 1
>gb|CB652545.1|CB652545 OSJNEc02K12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02K12 5', mRNA sequence
Length = 618
Score = 89.7 bits (45), Expect = 4e-015
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 1057 aggtcggcgaagggggtgaggccgaggcggaaggtgtggagcccagcgtccgcctccgcg 1116
|||||||||||| || |||||||||||||||||| ||||| ||| ||||| || | |||
Sbjct: 253 aggtcggcgaagcggttgaggccgaggcggaaggagtggaccccggcgtcggcggcggcg 194
Query: 1117 ttgtgcgcgtcgatgtaccgaaggttgtc 1145
|||||| ||||||||||||| ||||||||
Sbjct: 193 ttgtgctcgtcgatgtaccggaggttgtc 165
>dbj|AP005711.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone P0646H10,
*** SEQUENCING IN PROGRESS ***
Length = 152406
Score = 89.7 bits (45), Expect = 4e-015
Identities = 72/81 (88%)
Strand = Plus / Minus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
||||||||||||| || |||||| || ||||||||||||||||||||||| | ||| |
Sbjct: 1914 ctgctccgacagcctcagcaggttccctgtcgcgatcgcgttcaccccctccaccgcccc 1855
Query: 864 caccgccgagaacgcccagca 884
|||||||||||||||||||||
Sbjct: 1854 caccgccgagaacgcccagca 1834
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
|||||||||||||| |||||| || |||||||||||||||||| | ||||| | || |
Sbjct: 47329 ctgctccgacagcgtcaccagcttccccgtcgcgatcgcgttcgcgccctccaccgcgcc 47270
Query: 864 caccgccgagaacgcccagca 884
||||||||||||||||||||
Sbjct: 47269 aaccgccgagaacgcccagca 47249
Score = 65.9 bits (33), Expect = 6e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 760 ccgccgtcgcagccgctgtcctgggcgtcgcagtcgatgatctcctgctccgacagcgac 819
|||||||||||||||||||| | | ||||||||||| | ||||||||||||||| |||
Sbjct: 116479 ccgccgtcgcagccgctgtcgagcgtgtcgcagtcgaccagctcctgctccgacagtgac 116420
Query: 820 accag 824
|||||
Sbjct: 116419 accag 116415
Score = 65.9 bits (33), Expect = 6e-008
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
|||||||||||||| || |||||| |||||| ||||||||| | |||||| | ||| |
Sbjct: 29222 ctgctccgacagcgtcaacaggttccccgtcatgatcgcgttgatcccctccaccgcccc 29163
Query: 864 caccgccgagaacgcccagca 884
||||||||||||| |||||||
Sbjct: 29162 caccgccgagaacacccagca 29142
Score = 50.1 bits (25), Expect = 0.003
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 371 tcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagt 430
|||| ||||||||||| |||||||||||| || |||||||||||| ||||||||||
Sbjct: 29814 tcatacggatgtagccaccctcgccccagcctttgccccacgagttcttaacgatccagt 29755
Query: 431 a 431
|
Sbjct: 29754 a 29754
Score = 44.1 bits (22), Expect = 0.21
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
|||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 11635 ctgctccgacagcgtcaggaggttccccgtcgcgattgcgtt 11594
>ref|NT_107078.1| Oryza sativa (japonica cultivar-group)
Length = 747721
Score = 89.7 bits (45), Expect = 4e-015
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
||||||||||||| || |||||| || ||||||||||||||||||||||| | ||| |
Sbjct: 295411 ctgctccgacagcctcagcaggttccctgtcgcgatcgcgttcaccccctccaccgcccc 295470
Query: 864 caccgccgagaacgcccagca 884
|||||||||||||||||||||
Sbjct: 295471 caccgccgagaacgcccagca 295491
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
|||||||||||||| |||||| || |||||||||||||||||| | ||||| | || |
Sbjct: 250825 ctgctccgacagcgtcaccagcttccccgtcgcgatcgcgttcgcgccctccaccgcgcc 250884
Query: 864 caccgccgagaacgcccagca 884
||||||||||||||||||||
Sbjct: 250885 aaccgccgagaacgcccagca 250905
Score = 65.9 bits (33), Expect = 6e-008
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
|||||||||||||| || |||||| |||||| ||||||||| | |||||| | ||| |
Sbjct: 268103 ctgctccgacagcgtcaacaggttccccgtcatgatcgcgttgatcccctccaccgcccc 268162
Query: 864 caccgccgagaacgcccagca 884
||||||||||||| |||||||
Sbjct: 268163 caccgccgagaacacccagca 268183
Score = 65.9 bits (33), Expect = 6e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 760 ccgccgtcgcagccgctgtcctgggcgtcgcagtcgatgatctcctgctccgacagcgac 819
|||||||||||||||||||| | | ||||||||||| | ||||||||||||||| |||
Sbjct: 181653 ccgccgtcgcagccgctgtcgagcgtgtcgcagtcgaccagctcctgctccgacagtgac 181712
Query: 820 accag 824
|||||
Sbjct: 181713 accag 181717
Score = 60.0 bits (30), Expect = 4e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 371 tcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagt 430
||||||||||||||||| ||||||||| | |||| |||||||||||| || |||||||
Sbjct: 319382 tcatgcggatgtagccgctctcgccccatcctgcgccccacgagttcttgactatccagt 319323
Query: 431 ag 432
||
Sbjct: 319322 ag 319321
Score = 50.1 bits (25), Expect = 0.003
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 808 tccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgccacc 867
|||||||||| || |||||| || ||| ||||||||| | |||||| | || |||||
Sbjct: 321689 tccgacagcgtcagcaggttccctgtcatgatcgcgtttatcccctccaccgcgcccacc 321748
Query: 868 gccgagaacgcccagca 884
|||||||||||||||||
Sbjct: 321749 gccgagaacgcccagca 321765
Score = 50.1 bits (25), Expect = 0.003
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 371 tcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagt 430
|||| ||||||||||| |||||||||||| || |||||||||||| ||||||||||
Sbjct: 267511 tcatacggatgtagccaccctcgccccagcctttgccccacgagttcttaacgatccagt 267570
Query: 431 a 431
|
Sbjct: 267571 a 267571
Score = 46.1 bits (23), Expect = 0.054
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 371 tcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccag 429
||||||||||||||||| |||| ||||| | |||| ||| || ||||| |||||||||
Sbjct: 321140 tcatgcggatgtagccgctctcggcccagtttgcgccccatgaattcttgacgatccag 321198
Score = 44.1 bits (22), Expect = 0.21
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
|||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 285690 ctgctccgacagcgtcaggaggttccccgtcgcgattgcgtt 285731
>gb|AACV01027690.1| Oryza sativa (japonica cultivar-group) Ctg027690, whole genome
shotgun sequence
Length = 7180
Score = 89.7 bits (45), Expect = 4e-015
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
||||||||||||| || |||||| || ||||||||||||||||||||||| | ||| |
Sbjct: 1861 ctgctccgacagcctcagcaggttccctgtcgcgatcgcgttcaccccctccaccgcccc 1920
Query: 864 caccgccgagaacgcccagca 884
|||||||||||||||||||||
Sbjct: 1921 caccgccgagaacgcccagca 1941
>dbj|AP006170.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBa0042B15
Length = 157981
Score = 89.7 bits (45), Expect = 4e-015
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
||||||||||||| || |||||| || ||||||||||||||||||||||| | ||| |
Sbjct: 86187 ctgctccgacagcctcagcaggttccctgtcgcgatcgcgttcaccccctccaccgcccc 86246
Query: 864 caccgccgagaacgcccagca 884
|||||||||||||||||||||
Sbjct: 86247 caccgccgagaacgcccagca 86267
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
|||||||||||||| |||||| || |||||||||||||||||| | ||||| | || |
Sbjct: 41601 ctgctccgacagcgtcaccagcttccccgtcgcgatcgcgttcgcgccctccaccgcgcc 41660
Query: 864 caccgccgagaacgcccagca 884
||||||||||||||||||||
Sbjct: 41661 aaccgccgagaacgcccagca 41681
Score = 65.9 bits (33), Expect = 6e-008
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
|||||||||||||| || |||||| |||||| ||||||||| | |||||| | ||| |
Sbjct: 58879 ctgctccgacagcgtcaacaggttccccgtcatgatcgcgttgatcccctccaccgcccc 58938
Query: 864 caccgccgagaacgcccagca 884
||||||||||||| |||||||
Sbjct: 58939 caccgccgagaacacccagca 58959
Score = 60.0 bits (30), Expect = 4e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 371 tcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagt 430
||||||||||||||||| ||||||||| | |||| |||||||||||| || |||||||
Sbjct: 110158 tcatgcggatgtagccgctctcgccccatcctgcgccccacgagttcttgactatccagt 110099
Query: 431 ag 432
||
Sbjct: 110098 ag 110097
Score = 50.1 bits (25), Expect = 0.003
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 808 tccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgccacc 867
|||||||||| || |||||| || ||| ||||||||| | |||||| | || |||||
Sbjct: 112465 tccgacagcgtcagcaggttccctgtcatgatcgcgtttatcccctccaccgcgcccacc 112524
Query: 868 gccgagaacgcccagca 884
|||||||||||||||||
Sbjct: 112525 gccgagaacgcccagca 112541
Score = 50.1 bits (25), Expect = 0.003
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 371 tcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagt 430
|||| ||||||||||| |||||||||||| || |||||||||||| ||||||||||
Sbjct: 58287 tcatacggatgtagccaccctcgccccagcctttgccccacgagttcttaacgatccagt 58346
Query: 431 a 431
|
Sbjct: 58347 a 58347
Score = 46.1 bits (23), Expect = 0.054
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 371 tcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccag 429
||||||||||||||||| |||| ||||| | |||| ||| || ||||| |||||||||
Sbjct: 111916 tcatgcggatgtagccgctctcggcccagtttgcgccccatgaattcttgacgatccag 111974
Score = 44.1 bits (22), Expect = 0.21
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
|||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 76466 ctgctccgacagcgtcaggaggttccccgtcgcgattgcgtt 76507
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 89.7 bits (45), Expect = 4e-015
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
||||||||||||| || |||||| || ||||||||||||||||||||||| | ||| |
Sbjct: 22164694 ctgctccgacagcctcagcaggttccctgtcgcgatcgcgttcaccccctccaccgcccc 22164753
Query: 864 caccgccgagaacgcccagca 884
|||||||||||||||||||||
Sbjct: 22164754 caccgccgagaacgcccagca 22164774
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
|||||||||||||| |||||| || |||||||||||||||||| | ||||| | || |
Sbjct: 22120108 ctgctccgacagcgtcaccagcttccccgtcgcgatcgcgttcgcgccctccaccgcgcc 22120167
Query: 864 caccgccgagaacgcccagca 884
||||||||||||||||||||
Sbjct: 22120168 aaccgccgagaacgcccagca 22120188
Score = 65.9 bits (33), Expect = 6e-008
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
|||||||||||||| || |||||| |||||| ||||||||| | |||||| | ||| |
Sbjct: 22137386 ctgctccgacagcgtcaacaggttccccgtcatgatcgcgttgatcccctccaccgcccc 22137445
Query: 864 caccgccgagaacgcccagca 884
||||||||||||| |||||||
Sbjct: 22137446 caccgccgagaacacccagca 22137466
Score = 65.9 bits (33), Expect = 6e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 760 ccgccgtcgcagccgctgtcctgggcgtcgcagtcgatgatctcctgctccgacagcgac 819
|||||||||||||||||||| | | ||||||||||| | ||||||||||||||| |||
Sbjct: 22050936 ccgccgtcgcagccgctgtcgagcgtgtcgcagtcgaccagctcctgctccgacagtgac 22050995
Query: 820 accag 824
|||||
Sbjct: 22050996 accag 22051000
Score = 63.9 bits (32), Expect = 2e-007
Identities = 83/100 (83%)
Strand = Plus / Plus
Query: 785 cgtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgt 844
|||||||||| | || |||||||||||||||||||||||| | || || |||| ||
Sbjct: 18948684 cgtcgcagtccacgagctcctgctccgacagcgacaccagctcgccgttcttgatctggt 18948743
Query: 845 tcaccccctcgatggccgccaccgccgagaacgcccagca 884
| | |||||| || ||||||||||| ||||||||||||||
Sbjct: 18948744 tgatcccctctatcgccgccaccgcggagaacgcccagca 18948783
Score = 60.0 bits (30), Expect = 4e-006
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 371 tcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagt 430
||||||||||||||||| ||||||||| | |||| |||||||||||| || |||||||
Sbjct: 22188665 tcatgcggatgtagccgctctcgccccatcctgcgccccacgagttcttgactatccagt 22188606
Query: 431 ag 432
||
Sbjct: 22188605 ag 22188604
Score = 56.0 bits (28), Expect = 6e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 372 catgcggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagta 431
|||| ||||||||||||| |||||||| || | ||||||||||||||||||||||||
Sbjct: 18948241 catgaggatgtagccggcgtcgccccactccgccccccacgagttcttcacgatccagta 18948300
Score = 50.1 bits (25), Expect = 0.003
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 808 tccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgccacc 867
|||||||||| || |||||| || ||| ||||||||| | |||||| | || |||||
Sbjct: 22190972 tccgacagcgtcagcaggttccctgtcatgatcgcgtttatcccctccaccgcgcccacc 22191031
Query: 868 gccgagaacgcccagca 884
|||||||||||||||||
Sbjct: 22191032 gccgagaacgcccagca 22191048
Score = 50.1 bits (25), Expect = 0.003
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 371 tcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagt 430
|||| ||||||||||| |||||||||||| || |||||||||||| ||||||||||
Sbjct: 22136794 tcatacggatgtagccaccctcgccccagcctttgccccacgagttcttaacgatccagt 22136853
Query: 431 a 431
|
Sbjct: 22136854 a 22136854
Score = 46.1 bits (23), Expect = 0.054
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 371 tcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccag 429
||||||||||||||||| |||| ||||| | |||| ||| || ||||| |||||||||
Sbjct: 22190423 tcatgcggatgtagccgctctcggcccagtttgcgccccatgaattcttgacgatccag 22190481
Score = 44.1 bits (22), Expect = 0.21
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
|||||||||||||| || ||||| ||||||||||| |||||
Sbjct: 22154973 ctgctccgacagcgtcaggaggttccccgtcgcgattgcgtt 22155014
>gb|AACV01000451.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000451, whole
genome shotgun sequence
Length = 25473
Score = 79.8 bits (40), Expect = 4e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| |||
Sbjct: 21036 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcctgatcttgtt 20977
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||| |||||| |||||||||||||
Sbjct: 20976 cagcccctcgatggccgccgccgccgcgaacgcccagcac 20937
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 16188 cccctcgatcgccgccaccgccgcgaacgcccagca 16223
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 900 ctggtccttgacctcggtgacggcgcc 926
|||||||||||| ||||||||||||||
Sbjct: 16334 ctggtccttgacatcggtgacggcgcc 16360
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 79.8 bits (40), Expect = 4e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| |||
Sbjct: 6398359 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcctgatcttgtt 6398300
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||| |||||| |||||||||||||
Sbjct: 6398299 cagcccctcgatggccgccgccgccgcgaacgcccagcac 6398260
Score = 75.8 bits (38), Expect = 6e-011
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 741 gaacgcgttctccatctgcccgccgtcgcagccgctgtcctgggc---gtcgcagtcgat 797
||||||||||||||| ||||||| | ||||||||||| | || ||||||||||||
Sbjct: 39576028 gaacgcgttctccatgagcccgccctggcagccgctgttgtccgccgtgtcgcagtcgat 39575969
Query: 798 gatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgat 857
| |||||||||||||||||||||||| |||||| ||||||||| | ||||| |
Sbjct: 39575968 cagctcctgctccgacagcgacaccagccgccccgtccggatcgcgttgatgccctccac 39575909
Query: 858 ggccgccaccgccgagaacgcccagcacccaccgcactgttgctggtccttgacctcggt 917
|| | |||||| |||||||||||||| | ||||||| |||||||||||| ||||
Sbjct: 39575908 ggacaccaccgtggagaacgcccagcagctgccgcacttgccctggtccttgacgccggt 39575849
Query: 918 gacggcgccaagctggcgccagtcgatggcgtcggggaggtcgc 961
||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 39575848 gaccgcgcccttgcggcgccagtcgacggcgcgggggaggtcgc 39575805
Score = 71.9 bits (36), Expect = 9e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| ||
Sbjct: 12733334 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcttgatcctgtg 12733275
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||||||||| |||||||||||||
Sbjct: 12733274 caggccctcgatggccgccaccgccgcgaacgcccagcac 12733235
Score = 69.9 bits (35), Expect = 4e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
|||||||||||||| ||||||||||||||| | |||||| || ||| |||| |||||
Sbjct: 42929319 gtcgcagtcgatgagctcctgctccgacaggcgcgtcaggttgccggtcacgatggcgtt 42929260
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagca 884
| |||||| | |||||||||| |||||||||||||||
Sbjct: 42929259 gatcccctccaccgccgccaccgtcgagaacgcccagca 42929221
Score = 60.0 bits (30), Expect = 4e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 376 cggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagtagtcc 435
|||||||||||| ||||||||||| | || |||||||||||| ||||||||||| |||
Sbjct: 39576396 cggatgtagccgccctcgccccaggctgtgccccacgagttcttgacgatccagtactcc 39576337
Query: 436 ttgccg 441
|||||
Sbjct: 39576336 gtgccg 39576331
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 13829205 cccctcgatcgccgccaccgccgcgaacgcccagca 13829240
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 13823616 cccctcgatcgccgccaccgccgcgaacgcccagca 13823581
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 6393511 cccctcgatcgccgccaccgccgcgaacgcccagca 6393546
Score = 48.1 bits (24), Expect = 0.014
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| ||
Sbjct: 13840612 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcttgatcttgtg 13840553
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| ||||||||||||||| | | || |||||||||||||
Sbjct: 13840552 caggccctcgatggccgccgcggacgcgaacgcccagcac 13840513
Score = 48.1 bits (24), Expect = 0.014
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| ||
Sbjct: 13819251 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcttgatcttgtg 13819310
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| ||||||||||||||| | | || |||||||||||||
Sbjct: 13819311 caggccctcgatggccgccgcggacgcgaacgcccagcac 13819350
Score = 46.1 bits (23), Expect = 0.054
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagc 883
|||||| || ||||||||||||| |||||||||||
Sbjct: 12726988 cccctccatcgccgccaccgccgcgaacgcccagc 12727022
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 900 ctggtccttgacctcggtgacggcgcc 926
|||||||||||| ||||||||||||||
Sbjct: 6393657 ctggtccttgacatcggtgacggcgcc 6393683
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 901 tggtccttgacctcggtgacggcgcc 926
|||| |||||||||||||||||||||
Sbjct: 24419506 tggttcttgacctcggtgacggcgcc 24419531
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 859 gccgccaccgccgagaacgcccagca 884
||||||||||||| ||||||||||||
Sbjct: 24419211 gccgccaccgccgcgaacgcccagca 24419236
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1314 ggtggtggtggtggtgtaggag 1335
||||||||||||||||||||||
Sbjct: 16460341 ggtggtggtggtggtgtaggag 16460320
>ref|NM_188466.1| Oryza sativa (japonica cultivar-group), Ozsa8161 predicted mRNA
Length = 1101
Score = 79.8 bits (40), Expect = 4e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| |||
Sbjct: 612 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcctgatcttgtt 553
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||| |||||| |||||||||||||
Sbjct: 552 cagcccctcgatggccgccgccgccgcgaacgcccagcac 513
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 79.8 bits (40), Expect = 4e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| |||
Sbjct: 6398199 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcctgatcttgtt 6398140
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||| |||||| |||||||||||||
Sbjct: 6398139 cagcccctcgatggccgccgccgccgcgaacgcccagcac 6398100
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 6393351 cccctcgatcgccgccaccgccgcgaacgcccagca 6393386
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 900 ctggtccttgacctcggtgacggcgcc 926
|||||||||||| ||||||||||||||
Sbjct: 6393497 ctggtccttgacatcggtgacggcgcc 6393523
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0515G01
Length = 175072
Score = 79.8 bits (40), Expect = 4e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| |||
Sbjct: 171643 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcctgatcttgtt 171584
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||| |||||| |||||||||||||
Sbjct: 171583 cagcccctcgatggccgccgccgccgcgaacgcccagcac 171544
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 166795 cccctcgatcgccgccaccgccgcgaacgcccagca 166830
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 900 ctggtccttgacctcggtgacggcgcc 926
|||||||||||| ||||||||||||||
Sbjct: 166941 ctggtccttgacatcggtgacggcgcc 166967
>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0665D10
Length = 134967
Score = 79.8 bits (40), Expect = 4e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| |||
Sbjct: 22972 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcctgatcttgtt 22913
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||| |||||| |||||||||||||
Sbjct: 22912 cagcccctcgatggccgccgccgccgcgaacgcccagcac 22873
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 18124 cccctcgatcgccgccaccgccgcgaacgcccagca 18159
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 900 ctggtccttgacctcggtgacggcgcc 926
|||||||||||| ||||||||||||||
Sbjct: 18270 ctggtccttgacatcggtgacggcgcc 18296
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 79.8 bits (40), Expect = 4e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| |||
Sbjct: 6464269 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcctgatcttgtt 6464210
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||| |||||| |||||||||||||
Sbjct: 6464209 cagcccctcgatggccgccgccgccgcgaacgcccagcac 6464170
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 6459421 cccctcgatcgccgccaccgccgcgaacgcccagca 6459456
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 900 ctggtccttgacctcggtgacggcgcc 926
|||||||||||| ||||||||||||||
Sbjct: 6459567 ctggtccttgacatcggtgacggcgcc 6459593
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 79.8 bits (40), Expect = 4e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| |||
Sbjct: 6464269 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcctgatcttgtt 6464210
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||| |||||| |||||||||||||
Sbjct: 6464209 cagcccctcgatggccgccgccgccgcgaacgcccagcac 6464170
Score = 75.8 bits (38), Expect = 6e-011
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 741 gaacgcgttctccatctgcccgccgtcgcagccgctgtcctgggc---gtcgcagtcgat 797
||||||||||||||| ||||||| | ||||||||||| | || ||||||||||||
Sbjct: 38967917 gaacgcgttctccatgagcccgccctggcagccgctgttgtccgccgtgtcgcagtcgat 38967858
Query: 798 gatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgat 857
| |||||||||||||||||||||||| |||||| ||||||||| | ||||| |
Sbjct: 38967857 cagctcctgctccgacagcgacaccagccgccccgtccggatcgcgttgatgccctccac 38967798
Query: 858 ggccgccaccgccgagaacgcccagcacccaccgcactgttgctggtccttgacctcggt 917
|| | |||||| |||||||||||||| | ||||||| |||||||||||| ||||
Sbjct: 38967797 ggacaccaccgtggagaacgcccagcagctgccgcacttgccctggtccttgacgccggt 38967738
Query: 918 gacggcgccaagctggcgccagtcgatggcgtcggggaggtcgc 961
||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 38967737 gaccgcgcccttgcggcgccagtcgacggcgcgggggaggtcgc 38967694
Score = 71.9 bits (36), Expect = 9e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| ||
Sbjct: 12691271 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcttgatcctgtg 12691212
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||||||||| |||||||||||||
Sbjct: 12691211 caggccctcgatggccgccaccgccgcgaacgcccagcac 12691172
Score = 69.9 bits (35), Expect = 4e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
|||||||||||||| ||||||||||||||| | |||||| || ||| |||| |||||
Sbjct: 42217590 gtcgcagtcgatgagctcctgctccgacaggcgcgtcaggttgccggtcacgatggcgtt 42217531
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagca 884
| |||||| | |||||||||| |||||||||||||||
Sbjct: 42217530 gatcccctccaccgccgccaccgtcgagaacgcccagca 42217492
Score = 60.0 bits (30), Expect = 4e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 376 cggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagtagtcc 435
|||||||||||| ||||||||||| | || |||||||||||| ||||||||||| |||
Sbjct: 38968285 cggatgtagccgccctcgccccaggctgtgccccacgagttcttgacgatccagtactcc 38968226
Query: 436 ttgccg 441
|||||
Sbjct: 38968225 gtgccg 38968220
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 13805662 cccctcgatcgccgccaccgccgcgaacgcccagca 13805697
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 13800075 cccctcgatcgccgccaccgccgcgaacgcccagca 13800040
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 6459421 cccctcgatcgccgccaccgccgcgaacgcccagca 6459456
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 450 gccgtagcccaccgccgtgacgccgtggt 478
||||||||||||| |||||||||||||||
Sbjct: 23915944 gccgtagcccaccaccgtgacgccgtggt 23915972
Score = 48.1 bits (24), Expect = 0.014
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| ||
Sbjct: 13792263 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcttgatcttgtg 13792204
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| ||||||||||||||| | | || |||||||||||||
Sbjct: 13792203 caggccctcgatggccgccgcggacgcgaacgcccagcac 13792164
Score = 46.1 bits (23), Expect = 0.054
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagc 883
|||||| || ||||||||||||| |||||||||||
Sbjct: 12684925 cccctccatcgccgccaccgccgcgaacgcccagc 12684959
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 900 ctggtccttgacctcggtgacggcgcc 926
|||||||||||| ||||||||||||||
Sbjct: 6459567 ctggtccttgacatcggtgacggcgcc 6459593
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 901 tggtccttgacctcggtgacggcgcc 926
|||| |||||||||||||||||||||
Sbjct: 23916663 tggttcttgacctcggtgacggcgcc 23916688
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 859 gccgccaccgccgagaacgcccagca 884
||||||||||||| ||||||||||||
Sbjct: 23916368 gccgccaccgccgcgaacgcccagca 23916393
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1314 ggtggtggtggtggtgtaggag 1335
||||||||||||||||||||||
Sbjct: 16451652 ggtggtggtggtggtgtaggag 16451631
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 79.8 bits (40), Expect = 4e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| |||
Sbjct: 6400577 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcctgatcttgtt 6400518
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||| |||||| |||||||||||||
Sbjct: 6400517 cagcccctcgatggccgccgccgccgcgaacgcccagcac 6400478
Score = 75.8 bits (38), Expect = 6e-011
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 741 gaacgcgttctccatctgcccgccgtcgcagccgctgtcctgggc---gtcgcagtcgat 797
||||||||||||||| ||||||| | ||||||||||| | || ||||||||||||
Sbjct: 39495358 gaacgcgttctccatgagcccgccctggcagccgctgttgtccgccgtgtcgcagtcgat 39495299
Query: 798 gatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgat 857
| |||||||||||||||||||||||| |||||| ||||||||| | ||||| |
Sbjct: 39495298 cagctcctgctccgacagcgacaccagccgccccgtccggatcgcgttgatgccctccac 39495239
Query: 858 ggccgccaccgccgagaacgcccagcacccaccgcactgttgctggtccttgacctcggt 917
|| | |||||| |||||||||||||| | ||||||| |||||||||||| ||||
Sbjct: 39495238 ggacaccaccgtggagaacgcccagcagctgccgcacttgccctggtccttgacgccggt 39495179
Query: 918 gacggcgccaagctggcgccagtcgatggcgtcggggaggtcgc 961
||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 39495178 gaccgcgcccttgcggcgccagtcgacggcgcgggggaggtcgc 39495135
Score = 71.9 bits (36), Expect = 9e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| ||
Sbjct: 12735552 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcttgatcctgtg 12735493
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| |||||||||||||||||||||| |||||||||||||
Sbjct: 12735492 caggccctcgatggccgccaccgccgcgaacgcccagcac 12735453
Score = 69.9 bits (35), Expect = 4e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
|||||||||||||| ||||||||||||||| | |||||| || ||| |||| |||||
Sbjct: 42848649 gtcgcagtcgatgagctcctgctccgacaggcgcgtcaggttgccggtcacgatggcgtt 42848590
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagca 884
| |||||| | |||||||||| |||||||||||||||
Sbjct: 42848589 gatcccctccaccgccgccaccgtcgagaacgcccagca 42848551
Score = 60.0 bits (30), Expect = 4e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 376 cggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagtagtcc 435
|||||||||||| ||||||||||| | || |||||||||||| ||||||||||| |||
Sbjct: 39495726 cggatgtagccgccctcgccccaggctgtgccccacgagttcttgacgatccagtactcc 39495667
Query: 436 ttgccg 441
|||||
Sbjct: 39495666 gtgccg 39495661
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 13831423 cccctcgatcgccgccaccgccgcgaacgcccagca 13831458
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 13825834 cccctcgatcgccgccaccgccgcgaacgcccagca 13825799
Score = 56.0 bits (28), Expect = 6e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagca 884
||||||||| ||||||||||||| ||||||||||||
Sbjct: 6395729 cccctcgatcgccgccaccgccgcgaacgcccagca 6395764
Score = 48.1 bits (24), Expect = 0.014
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| ||
Sbjct: 13842830 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcttgatcttgtg 13842771
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| ||||||||||||||| | | || |||||||||||||
Sbjct: 13842770 caggccctcgatggccgccgcggacgcgaacgcccagcac 13842731
Score = 48.1 bits (24), Expect = 0.014
Identities = 81/100 (81%)
Strand = Plus / Plus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
||||||||| | ||| |||||||||||||||||||||| | || ||| |||| ||
Sbjct: 13821469 gtcgcagtccaccatcacctgctccgacagcgacaccagctcgccggtcttgatcttgtg 13821528
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagcac 885
|| ||||||||||||||| | | || |||||||||||||
Sbjct: 13821529 caggccctcgatggccgccgcggacgcgaacgcccagcac 13821568
Score = 46.1 bits (23), Expect = 0.054
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 849 cccctcgatggccgccaccgccgagaacgcccagc 883
|||||| || ||||||||||||| |||||||||||
Sbjct: 12729206 cccctccatcgccgccaccgccgcgaacgcccagc 12729240
Score = 46.1 bits (23), Expect = 0.054
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 900 ctggtccttgacctcggtgacggcgcc 926
|||||||||||| ||||||||||||||
Sbjct: 6395875 ctggtccttgacatcggtgacggcgcc 6395901
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 901 tggtccttgacctcggtgacggcgcc 926
|||| |||||||||||||||||||||
Sbjct: 24340789 tggttcttgacctcggtgacggcgcc 24340814
Score = 44.1 bits (22), Expect = 0.21
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 859 gccgccaccgccgagaacgcccagca 884
||||||||||||| ||||||||||||
Sbjct: 24340494 gccgccaccgccgcgaacgcccagca 24340519
Score = 44.1 bits (22), Expect = 0.21
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1314 ggtggtggtggtggtgtaggag 1335
||||||||||||||||||||||
Sbjct: 16462559 ggtggtggtggtggtgtaggag 16462538
>dbj|D76415.1| Rice seedling mRNA for cysteine proteinase, complete cds
Length = 1429
Score = 75.8 bits (38), Expect = 6e-011
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 741 gaacgcgttctccatctgcccgccgtcgcagccgctgtcctgggc---gtcgcagtcgat 797
||||||||||||||| ||||||| | ||||||||||| | || ||||||||||||
Sbjct: 634 gaacgcgttctccatgagcccgccctggcagccgctgttgtccgccgtgtcgcagtcgat 575
Query: 798 gatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgat 857
| |||||||||||||||||||||||| |||||| ||||||||| | ||||| |
Sbjct: 574 cagctcctgctccgacagcgacaccagccgccccgtccggatcgcgttgatgccctccac 515
Query: 858 ggccgccaccgccgagaacgcccagcacccaccgcactgttgctggtccttgacctcggt 917
|| | |||||| |||||||||||||| | ||||||| |||||||||||| ||||
Sbjct: 514 ggacaccaccgtggagaacgcccagcagctgccgcacttgccctggtccttgacgccggt 455
Query: 918 gacggcgccaagctggcgccagtcgatggcgtcggggaggtcgc 961
||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 454 gaccgcgcccttgcggcgccagtcgacggcgcgggggaggtcgc 411
Score = 60.0 bits (30), Expect = 4e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 376 cggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagtagtcc 435
|||||||||||| ||||||||||| | || |||||||||||| ||||||||||| |||
Sbjct: 999 cggatgtagccgccctcgccccaggctgtgccccacgagttcttgacgatccagtactcc 940
Query: 436 ttgccg 441
|||||
Sbjct: 939 gtgccg 934
>gb|AC091089.1|AC091089 Oryza sativa (japonica cultivar-group) chromosome 1 clone P0497A05, ***
SEQUENCING IN PROGRESS ***, 2 ordered pieces
Length = 132928
Score = 75.8 bits (38), Expect = 6e-011
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 741 gaacgcgttctccatctgcccgccgtcgcagccgctgtcctgggc---gtcgcagtcgat 797
||||||||||||||| ||||||| | ||||||||||| | || ||||||||||||
Sbjct: 51775 gaacgcgttctccatgagcccgccctggcagccgctgttgtccgccgtgtcgcagtcgat 51716
Query: 798 gatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgat 857
| |||||||||||||||||||||||| |||||| ||||||||| | ||||| |
Sbjct: 51715 cagctcctgctccgacagcgacaccagccgccccgtccggatcgcgttgatgccctccac 51656
Query: 858 ggccgccaccgccgagaacgcccagcacccaccgcactgttgctggtccttgacctcggt 917
|| | |||||| |||||||||||||| | ||||||| |||||||||||| ||||
Sbjct: 51655 ggacaccaccgtggagaacgcccagcagctgccgcacttgccctggtccttgacgccggt 51596
Query: 918 gacggcgccaagctggcgccagtcgatggcgtcggggaggtcgc 961
||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 51595 gaccgcgcccttgcggcgccagtcgacggcgcgggggaggtcgc 51552
Score = 60.0 bits (30), Expect = 4e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 376 cggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagtagtcc 435
|||||||||||| ||||||||||| | || |||||||||||| ||||||||||| |||
Sbjct: 52143 cggatgtagccgccctcgccccaggctgtgccccacgagttcttgacgatccagtactcc 52084
Query: 436 ttgccg 441
|||||
Sbjct: 52083 gtgccg 52078
>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0497A05
Length = 130919
Score = 75.8 bits (38), Expect = 6e-011
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 741 gaacgcgttctccatctgcccgccgtcgcagccgctgtcctgggc---gtcgcagtcgat 797
||||||||||||||| ||||||| | ||||||||||| | || ||||||||||||
Sbjct: 49800 gaacgcgttctccatgagcccgccctggcagccgctgttgtccgccgtgtcgcagtcgat 49741
Query: 798 gatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgat 857
| |||||||||||||||||||||||| |||||| ||||||||| | ||||| |
Sbjct: 49740 cagctcctgctccgacagcgacaccagccgccccgtccggatcgcgttgatgccctccac 49681
Query: 858 ggccgccaccgccgagaacgcccagcacccaccgcactgttgctggtccttgacctcggt 917
|| | |||||| |||||||||||||| | ||||||| |||||||||||| ||||
Sbjct: 49680 ggacaccaccgtggagaacgcccagcagctgccgcacttgccctggtccttgacgccggt 49621
Query: 918 gacggcgccaagctggcgccagtcgatggcgtcggggaggtcgc 961
||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 49620 gaccgcgcccttgcggcgccagtcgacggcgcgggggaggtcgc 49577
Score = 60.0 bits (30), Expect = 4e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 376 cggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagtagtcc 435
|||||||||||| ||||||||||| | || |||||||||||| ||||||||||| |||
Sbjct: 50168 cggatgtagccgccctcgccccaggctgtgccccacgagttcttgacgatccagtactcc 50109
Query: 436 ttgccg 441
|||||
Sbjct: 50108 gtgccg 50103
>gb|AACV01002890.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002890, whole
genome shotgun sequence
Length = 20508
Score = 75.8 bits (38), Expect = 6e-011
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Plus
Query: 741 gaacgcgttctccatctgcccgccgtcgcagccgctgtcctgggc---gtcgcagtcgat 797
||||||||||||||| ||||||| | ||||||||||| | || ||||||||||||
Sbjct: 10189 gaacgcgttctccatgagcccgccctggcagccgctgttgtccgccgtgtcgcagtcgat 10248
Query: 798 gatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgat 857
| |||||||||||||||||||||||| |||||| ||||||||| | ||||| |
Sbjct: 10249 cagctcctgctccgacagcgacaccagccgccccgtccggatcgcgttgatgccctccac 10308
Query: 858 ggccgccaccgccgagaacgcccagcacccaccgcactgttgctggtccttgacctcggt 917
|| | |||||| |||||||||||||| | ||||||| |||||||||||| ||||
Sbjct: 10309 ggacaccaccgtggagaacgcccagcagctgccgcacttgccctggtccttgacgccggt 10368
Query: 918 gacggcgccaagctggcgccagtcgatggcgtcggggaggtcgc 961
||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 10369 gaccgcgcccttgcggcgccagtcgacggcgcgggggaggtcgc 10412
Score = 60.0 bits (30), Expect = 4e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 376 cggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagtagtcc 435
|||||||||||| ||||||||||| | || |||||||||||| ||||||||||| |||
Sbjct: 9821 cggatgtagccgccctcgccccaggctgtgccccacgagttcttgacgatccagtactcc 9880
Query: 436 ttgccg 441
|||||
Sbjct: 9881 gtgccg 9886
>ref|XM_463580.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1116
Score = 75.8 bits (38), Expect = 6e-011
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 741 gaacgcgttctccatctgcccgccgtcgcagccgctgtcctgggc---gtcgcagtcgat 797
||||||||||||||| ||||||| | ||||||||||| | || ||||||||||||
Sbjct: 621 gaacgcgttctccatgagcccgccctggcagccgctgttgtccgccgtgtcgcagtcgat 562
Query: 798 gatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgat 857
| |||||||||||||||||||||||| |||||| ||||||||| | ||||| |
Sbjct: 561 cagctcctgctccgacagcgacaccagccgccccgtccggatcgcgttgatgccctccac 502
Query: 858 ggccgccaccgccgagaacgcccagcacccaccgcactgttgctggtccttgacctcggt 917
|| | |||||| |||||||||||||| | ||||||| |||||||||||| ||||
Sbjct: 501 ggacaccaccgtggagaacgcccagcagctgccgcacttgccctggtccttgacgccggt 442
Query: 918 gacggcgccaagctggcgccagtcgatggcgtcggggaggtcgc 961
||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 441 gaccgcgcccttgcggcgccagtcgacggcgcgggggaggtcgc 398
Score = 60.0 bits (30), Expect = 4e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 376 cggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagtagtcc 435
|||||||||||| ||||||||||| | || |||||||||||| ||||||||||| |||
Sbjct: 989 cggatgtagccgccctcgccccaggctgtgccccacgagttcttgacgatccagtactcc 930
Query: 436 ttgccg 441
|||||
Sbjct: 929 gtgccg 924
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 75.8 bits (38), Expect = 6e-011
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 741 gaacgcgttctccatctgcccgccgtcgcagccgctgtcctgggc---gtcgcagtcgat 797
||||||||||||||| ||||||| | ||||||||||| | || ||||||||||||
Sbjct: 14023411 gaacgcgttctccatgagcccgccctggcagccgctgttgtccgccgtgtcgcagtcgat 14023352
Query: 798 gatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgat 857
| |||||||||||||||||||||||| |||||| ||||||||| | ||||| |
Sbjct: 14023351 cagctcctgctccgacagcgacaccagccgccccgtccggatcgcgttgatgccctccac 14023292
Query: 858 ggccgccaccgccgagaacgcccagcacccaccgcactgttgctggtccttgacctcggt 917
|| | |||||| |||||||||||||| | ||||||| |||||||||||| ||||
Sbjct: 14023291 ggacaccaccgtggagaacgcccagcagctgccgcacttgccctggtccttgacgccggt 14023232
Query: 918 gacggcgccaagctggcgccagtcgatggcgtcggggaggtcgc 961
||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 14023231 gaccgcgcccttgcggcgccagtcgacggcgcgggggaggtcgc 14023188
Score = 60.0 bits (30), Expect = 4e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 376 cggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagtagtcc 435
|||||||||||| ||||||||||| | || |||||||||||| ||||||||||| |||
Sbjct: 14023779 cggatgtagccgccctcgccccaggctgtgccccacgagttcttgacgatccagtactcc 14023720
Query: 436 ttgccg 441
|||||
Sbjct: 14023719 gtgccg 14023714
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1417F08
Length = 155536
Score = 75.8 bits (38), Expect = 6e-011
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 741 gaacgcgttctccatctgcccgccgtcgcagccgctgtcctgggc---gtcgcagtcgat 797
||||||||||||||| ||||||| | ||||||||||| | || ||||||||||||
Sbjct: 70372 gaacgcgttctccatgagcccgccctggcagccgctgttgtccgccgtgtcgcagtcgat 70313
Query: 798 gatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgat 857
| |||||||||||||||||||||||| |||||| ||||||||| | ||||| |
Sbjct: 70312 cagctcctgctccgacagcgacaccagccgccccgtccggatcgcgttgatgccctccac 70253
Query: 858 ggccgccaccgccgagaacgcccagcacccaccgcactgttgctggtccttgacctcggt 917
|| | |||||| |||||||||||||| | ||||||| |||||||||||| ||||
Sbjct: 70252 ggacaccaccgtggagaacgcccagcagctgccgcacttgccctggtccttgacgccggt 70193
Query: 918 gacggcgccaagctggcgccagtcgatggcgtcggggaggtcgc 961
||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 70192 gaccgcgcccttgcggcgccagtcgacggcgcgggggaggtcgc 70149
Score = 60.0 bits (30), Expect = 4e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 376 cggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagtagtcc 435
|||||||||||| ||||||||||| | || |||||||||||| ||||||||||| |||
Sbjct: 70740 cggatgtagccgccctcgccccaggctgtgccccacgagttcttgacgatccagtactcc 70681
Query: 436 ttgccg 441
|||||
Sbjct: 70680 gtgccg 70675
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 75.8 bits (38), Expect = 6e-011
Identities = 178/224 (79%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 741 gaacgcgttctccatctgcccgccgtcgcagccgctgtcctgggc---gtcgcagtcgat 797
||||||||||||||| ||||||| | ||||||||||| | || ||||||||||||
Sbjct: 13766196 gaacgcgttctccatgagcccgccctggcagccgctgttgtccgccgtgtcgcagtcgat 13766137
Query: 798 gatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgat 857
| |||||||||||||||||||||||| |||||| ||||||||| | ||||| |
Sbjct: 13766136 cagctcctgctccgacagcgacaccagccgccccgtccggatcgcgttgatgccctccac 13766077
Query: 858 ggccgccaccgccgagaacgcccagcacccaccgcactgttgctggtccttgacctcggt 917
|| | |||||| |||||||||||||| | ||||||| |||||||||||| ||||
Sbjct: 13766076 ggacaccaccgtggagaacgcccagcagctgccgcacttgccctggtccttgacgccggt 13766017
Query: 918 gacggcgccaagctggcgccagtcgatggcgtcggggaggtcgc 961
||| ||||| |||||||||||| |||| |||||||||||
Sbjct: 13766016 gaccgcgcccttgcggcgccagtcgacggcgcgggggaggtcgc 13765973
Score = 69.9 bits (35), Expect = 4e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 786 gtcgcagtcgatgatctcctgctccgacagcgacaccaggttacccgtcgcgatcgcgtt 845
|||||||||||||| ||||||||||||||| | |||||| || ||| |||| |||||
Sbjct: 17015869 gtcgcagtcgatgagctcctgctccgacaggcgcgtcaggttgccggtcacgatggcgtt 17015810
Query: 846 caccccctcgatggccgccaccgccgagaacgcccagca 884
| |||||| | |||||||||| |||||||||||||||
Sbjct: 17015809 gatcccctccaccgccgccaccgtcgagaacgcccagca 17015771
Score = 60.0 bits (30), Expect = 4e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 376 cggatgtagccggcctcgccccagctggcgctccacgagttcttcacgatccagtagtcc 435
|||||||||||| ||||||||||| | || |||||||||||| ||||||||||| |||
Sbjct: 13766564 cggatgtagccgccctcgccccaggctgtgccccacgagttcttgacgatccagtactcc 13766505
Query: 436 ttgccg 441
|||||
Sbjct: 13766504 gtgccg 13766499
>gb|CA998169.1|CA998169 S345A_B07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 265
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 128 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 69
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 68 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 12
>dbj|AK061729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B12, full
insert sequence
Length = 976
Score = 73.8 bits (37), Expect = 2e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 363 gttgcgcctcatgcggatgtagccggcctcgccccagctggcgctccacgagttcttcac 422
||||||| ||| |||| |||||||| ||| |||||||| || |||||||||| ||||
Sbjct: 245 gttgcgctccatacggacgtagccggactcaccccagctcttgccccacgagttcctcac 186
Query: 423 gatccagtagtccttgccgctctcgctgccgtagcccaccgccgtgacgccgtggtc 479
|||||||||||||||||| |||| ||||||| || || || | ||||||||||||
Sbjct: 185 gatccagtagtccttgccattctctgtgccgtacccaacagcagcgacgccgtggtc 129
>dbj|AK071733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107H18, full
insert sequence
Length = 1353
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
|||||||||||||| |||||| || |||||||||||||||||| | ||||| | || |
Sbjct: 748 ctgctccgacagcgtcaccagcttccccgtcgcgatcgcgttcgcgccctccaccgcgcc 689
Query: 864 caccgccgagaacgcccagca 884
||||||||||||||||||||
Sbjct: 688 aaccgccgagaacgcccagca 668
>gb|AACV01020548.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020548, whole
genome shotgun sequence
Length = 6764
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 804 ctgctccgacagcgacaccaggttacccgtcgcgatcgcgttcaccccctcgatggccgc 863
|||||||||||||| |||||| || |||||||||||||||||| | ||||| | || |
Sbjct: 4076 ctgctccgacagcgtcaccagcttccccgtcgcgatcgcgttcgcgccctccaccgcgcc 4135
Query: 864 caccgccgagaacgcccagca 884
||||||||||||||||||||
Sbjct: 4136 aaccgccgagaacgcccagca 4156
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,101,444
Number of Sequences: 438736
Number of extensions: 3101444
Number of successful extensions: 55292
Number of sequences better than 0.5: 249
Number of HSP's better than 0.5 without gapping: 278
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 46042
Number of HSP's gapped (non-prelim): 9160
length of query: 1467
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1446
effective length of database: 2,791,206,460
effective search space: 4036084541160
effective search space used: 4036084541160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)