BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665460.2.1
(649 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB657603.1|CB657603 OSJNEc13B13.r OSJNEc Oryza sativa (j... 458 e-126
dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA... 458 e-126
gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 ... 458 e-126
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 458 e-126
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 458 e-126
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 458 e-126
gb|AACV01008082.1| Oryza sativa (japonica cultivar-group) c... 430 e-118
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 430 e-118
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 430 e-118
gb|AU092661.1|AU092661 AU092661 Rice callus Oryza sativa (j... 186 1e-044
dbj|AP004307.2| Oryza sativa (japonica cultivar-group) geno... 186 1e-044
gb|AACV01015282.1| Oryza sativa (japonica cultivar-group) c... 186 1e-044
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 186 1e-044
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 186 1e-044
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 186 1e-044
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 186 1e-044
gb|AU032129.1|AU032129 AU032129 Rice root Oryza sativa (jap... 178 2e-042
gb|C22351.1|C22351 C22351 Rice callus cDNA Oryza sativa (ja... 131 5e-028
gb|AU181509.1|AU181509 AU181509 Rice callus (2001) Oryza sa... 119 2e-024
gb|AACV01011020.1| Oryza sativa (japonica cultivar-group) c... 113 1e-022
ref|XM_476068.1| Oryza sativa (japonica cultivar-group), p... 113 1e-022
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 113 1e-022
gb|AC135425.3| Oryza sativa (japonica cultivar-group) chrom... 113 1e-022
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 113 1e-022
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 113 1e-022
gb|AC130610.3| Oryza sativa (japonica cultivar-group) chrom... 113 1e-022
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 113 1e-022
dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA... 109 2e-021
dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA... 109 2e-021
dbj|AP003333.4| Oryza sativa (japonica cultivar-group) geno... 109 2e-021
dbj|AP003253.3| Oryza sativa (japonica cultivar-group) geno... 109 2e-021
gb|AACV01001725.1| Oryza sativa (japonica cultivar-group) c... 109 2e-021
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 109 2e-021
ref|NM_192605.1| Oryza sativa (japonica cultivar-group), p... 109 2e-021
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 109 2e-021
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 109 2e-021
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 109 2e-021
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 109 2e-021
dbj|AK062887.1| Oryza sativa (japonica cultivar-group) cDNA... 101 5e-019
dbj|AK103199.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
gb|AACV01000298.1| Oryza sativa (japonica cultivar-group) c... 90 2e-015
dbj|AP002524.2| Oryza sativa (japonica cultivar-group) geno... 90 2e-015
dbj|AP003118.2| Oryza sativa (japonica cultivar-group) geno... 90 2e-015
ref|NM_189545.1| Oryza sativa (japonica cultivar-group), p... 90 2e-015
ref|XM_550392.1| Oryza sativa (japonica cultivar-group), mRNA 90 2e-015
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 90 2e-015
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 90 2e-015
gb|C22382.1|C22382 C22382 Rice callus cDNA Oryza sativa (ja... 86 3e-014
ref|XM_476821.1| Oryza sativa (japonica cultivar-group), mRNA 82 4e-013
gb|D41575.1|D41575 RICS4159A Rice shoot Oryza sativa (japon... 80 2e-012
gb|D40952.1|D40952 RICS3149A Rice shoot Oryza sativa (japon... 58 6e-006
dbj|AK061561.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK068135.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK105732.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 ... 48 0.006
dbj|AK109350.2| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
gb|AACV01007426.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|XM_468996.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.006
ref|NT_079918.2| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|C74254.1|C74254 C74254 Rice panicle shorter than 3cm Ory... 46 0.023
gb|AU091360.1|AU091360 AU091360 Rice panicle shorter than 3... 46 0.023
dbj|AP004061.1| Oryza sativa (japonica cultivar-group) chro... 46 0.023
dbj|AK105531.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.023
dbj|AP005647.3| Oryza sativa (japonica cultivar-group) geno... 46 0.023
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 46 0.023
dbj|AP003761.3| Oryza sativa (japonica cultivar-group) geno... 46 0.023
gb|AACV01003301.1| Oryza sativa (japonica cultivar-group) c... 46 0.023
gb|AACV01014884.1| Oryza sativa (japonica cultivar-group) c... 46 0.023
ref|XM_464070.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.023
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 46 0.023
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.023
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.023
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.023
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.023
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.023
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.023
gb|AQ914260.1|AQ914260 nbeb0048C09f CUGI Rice BAC Library (... 42 0.37
gb|AQ916632.1|AQ916632 nbeb0066L04r CUGI Rice BAC Library (... 42 0.37
gb|AC026759.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
dbj|AK120799.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.37
gb|AC098694.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|AC087545.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|AC145127.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|AACV01002042.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
gb|AACV01010487.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
gb|AACV01021618.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
gb|AACV01023578.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
ref|NM_192476.1| Oryza sativa (japonica cultivar-group), p... 42 0.37
ref|NM_194591.1| Oryza sativa (japonica cultivar-group) put... 42 0.37
ref|NM_196653.1| Oryza sativa (japonica cultivar-group) hyp... 42 0.37
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 42 0.37
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 42 0.37
ref|XM_473909.1| Oryza sativa (japonica cultivar-group), p... 42 0.37
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 42 0.37
ref|NT_107200.1| Oryza sativa (japonica cultivar-group) 42 0.37
dbj|AP003291.3| Oryza sativa (japonica cultivar-group) geno... 42 0.37
dbj|AP004364.4| Oryza sativa (japonica cultivar-group) geno... 42 0.37
gb|CH401265.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromoso... 42 0.37
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.37
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.37
gb|AC087546.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|AC078891.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
>gb|CB657603.1|CB657603 OSJNEc13B13.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc13B13 3', mRNA sequence
Length = 803
Score = 458 bits (231), Expect = e-126
Identities = 359/402 (89%)
Strand = Plus / Minus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||| |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 648 gctcaacgagctggtcctcctcaacagcggcatctcgtcgtgcatcccgccggagatcgg 589
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| ||||||||||||| | | |||||||| | |||||
Sbjct: 588 caagctggacaagctcaccgtgctcgacctcagcttcaacgacttcgccggcgcgctgcc 529
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 528 ggagaccatcggccacatgcgggcgctggagcagctcaacgtcgcgcacaacggcctcgc 469
Query: 181 cggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcacctactcgta 240
||||||||| ||||| | |||||| ||| |||||||||||||||||||||||||| |
Sbjct: 468 cggcgagatcccggactccatctgcgccctcccgcacctcaagaacttcacctactccca 409
Query: 241 caacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgcca 300
||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 408 caacttcttctgcggcgagccgcaccgctgcctcgaggtgccgcacgttgacgaccgcca 349
Query: 301 gaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctgca 360
||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 348 gaactgcatcgccggccgccccgaccagcgctccggcgaggagtgcatcgcgttcctgca 289
Query: 361 ccagccgagggtgcgctgcgacgcccacgggtgcatcgcgcc 402
|| ||| ||||| ||||||||| ||||| |||||||||||
Sbjct: 288 ccgcccgccggtgcactgcgacgcgcacggctgcatcgcgcc 247
>dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A10, full
insert sequence
Length = 1408
Score = 458 bits (231), Expect = e-126
Identities = 359/402 (89%)
Strand = Plus / Plus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||| |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 829 gctcaacgagctggtcctcctcaacagcggcatctcgtcgtgcatcccgccggagatcgg 888
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| ||||||||||||| | | |||||||| | |||||
Sbjct: 889 caagctggacaagctcaccgtgctcgacctcagcttcaacgacttcgccggcgcgctgcc 948
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 949 ggagaccatcggccacatgcgggcgctggagcagctcaacgtcgcgcacaacggcctcgc 1008
Query: 181 cggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcacctactcgta 240
||||||||| ||||| | |||||| ||| |||||||||||||||||||||||||| |
Sbjct: 1009 cggcgagatcccggactccatctgcgccctcccgcacctcaagaacttcacctactccca 1068
Query: 241 caacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgcca 300
||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 1069 caacttcttctgcggcgagccgcaccgctgcctcgaggtgccgcacgttgacgaccgcca 1128
Query: 301 gaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctgca 360
||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 1129 gaactgcatcgccggccgccccgaccagcgctccggcgaggagtgcatcgcgttcctgca 1188
Query: 361 ccagccgagggtgcgctgcgacgcccacgggtgcatcgcgcc 402
|| ||| ||||| ||||||||| ||||| |||||||||||
Sbjct: 1189 ccgcccgccggtgcactgcgacgcgcacggctgcatcgcgcc 1230
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
sequence
Length = 141582
Score = 458 bits (231), Expect = e-126
Identities = 359/402 (89%)
Strand = Plus / Plus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||| |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 99008 gctcaacgagctggtcctcctcaacagcggcatctcgtcgtgcatcccgccggagatcgg 99067
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| ||||||||||||| | | |||||||| | |||||
Sbjct: 99068 caagctggacaagctcaccgtgctcgacctcagcttcaacgacttcgccggcgcgctgcc 99127
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 99128 ggagaccatcggccacatgcgggcgctggagcagctcaacgtcgcgcacaacggcctcgc 99187
Query: 181 cggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcacctactcgta 240
||||||||| ||||| | |||||| ||| |||||||||||||||||||||||||| |
Sbjct: 99188 cggcgagatcccggactccatctgcgccctcccgcacctcaagaacttcacctactccca 99247
Query: 241 caacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgcca 300
||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 99248 caacttcttctgcggcgagccgcaccgctgcctcgaggtgccgcacgttgacgaccgcca 99307
Query: 301 gaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctgca 360
||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 99308 gaactgcatcgccggccgccccgaccagcgctccggcgaggagtgcatcgcgttcctgca 99367
Query: 361 ccagccgagggtgcgctgcgacgcccacgggtgcatcgcgcc 402
|| ||| ||||| ||||||||| ||||| |||||||||||
Sbjct: 99368 ccgcccgccggtgcactgcgacgcgcacggctgcatcgcgcc 99409
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 458 bits (231), Expect = e-126
Identities = 359/402 (89%)
Strand = Plus / Minus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||| |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 1959917 gctcaacgagctggtcctcctcaacagcggcatctcgtcgtgcatcccgccggagatcgg 1959858
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| ||||||||||||| | | |||||||| | |||||
Sbjct: 1959857 caagctggacaagctcaccgtgctcgacctcagcttcaacgacttcgccggcgcgctgcc 1959798
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 1959797 ggagaccatcggccacatgcgggcgctggagcagctcaacgtcgcgcacaacggcctcgc 1959738
Query: 181 cggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcacctactcgta 240
||||||||| ||||| | |||||| ||| |||||||||||||||||||||||||| |
Sbjct: 1959737 cggcgagatcccggactccatctgcgccctcccgcacctcaagaacttcacctactccca 1959678
Query: 241 caacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgcca 300
||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 1959677 caacttcttctgcggcgagccgcaccgctgcctcgaggtgccgcacgttgacgaccgcca 1959618
Query: 301 gaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctgca 360
||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 1959617 gaactgcatcgccggccgccccgaccagcgctccggcgaggagtgcatcgcgttcctgca 1959558
Query: 361 ccagccgagggtgcgctgcgacgcccacgggtgcatcgcgcc 402
|| ||| ||||| ||||||||| ||||| |||||||||||
Sbjct: 1959557 ccgcccgccggtgcactgcgacgcgcacggctgcatcgcgcc 1959516
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 458 bits (231), Expect = e-126
Identities = 359/402 (89%)
Strand = Plus / Minus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||| |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 32871043 gctcaacgagctggtcctcctcaacagcggcatctcgtcgtgcatcccgccggagatcgg 32870984
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| ||||||||||||| | | |||||||| | |||||
Sbjct: 32870983 caagctggacaagctcaccgtgctcgacctcagcttcaacgacttcgccggcgcgctgcc 32870924
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 32870923 ggagaccatcggccacatgcgggcgctggagcagctcaacgtcgcgcacaacggcctcgc 32870864
Query: 181 cggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcacctactcgta 240
||||||||| ||||| | |||||| ||| |||||||||||||||||||||||||| |
Sbjct: 32870863 cggcgagatcccggactccatctgcgccctcccgcacctcaagaacttcacctactccca 32870804
Query: 241 caacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgcca 300
||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 32870803 caacttcttctgcggcgagccgcaccgctgcctcgaggtgccgcacgttgacgaccgcca 32870744
Query: 301 gaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctgca 360
||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 32870743 gaactgcatcgccggccgccccgaccagcgctccggcgaggagtgcatcgcgttcctgca 32870684
Query: 361 ccagccgagggtgcgctgcgacgcccacgggtgcatcgcgcc 402
|| ||| ||||| ||||||||| ||||| |||||||||||
Sbjct: 32870683 ccgcccgccggtgcactgcgacgcgcacggctgcatcgcgcc 32870642
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 40 ctgcatcccgcccgagatcggcaagctg 67
|||||||||||| |||||||||||||||
Sbjct: 24206901 ctgcatcccgccggagatcggcaagctg 24206874
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 458 bits (231), Expect = e-126
Identities = 359/402 (89%)
Strand = Plus / Minus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||| |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 32780533 gctcaacgagctggtcctcctcaacagcggcatctcgtcgtgcatcccgccggagatcgg 32780474
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| ||||||||||||| | | |||||||| | |||||
Sbjct: 32780473 caagctggacaagctcaccgtgctcgacctcagcttcaacgacttcgccggcgcgctgcc 32780414
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 32780413 ggagaccatcggccacatgcgggcgctggagcagctcaacgtcgcgcacaacggcctcgc 32780354
Query: 181 cggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcacctactcgta 240
||||||||| ||||| | |||||| ||| |||||||||||||||||||||||||| |
Sbjct: 32780353 cggcgagatcccggactccatctgcgccctcccgcacctcaagaacttcacctactccca 32780294
Query: 241 caacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgcca 300
||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 32780293 caacttcttctgcggcgagccgcaccgctgcctcgaggtgccgcacgttgacgaccgcca 32780234
Query: 301 gaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctgca 360
||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 32780233 gaactgcatcgccggccgccccgaccagcgctccggcgaggagtgcatcgcgttcctgca 32780174
Query: 361 ccagccgagggtgcgctgcgacgcccacgggtgcatcgcgcc 402
|| ||| ||||| ||||||||| ||||| |||||||||||
Sbjct: 32780173 ccgcccgccggtgcactgcgacgcgcacggctgcatcgcgcc 32780132
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 40 ctgcatcccgcccgagatcggcaagctg 67
|||||||||||| |||||||||||||||
Sbjct: 24289432 ctgcatcccgccggagatcggcaagctg 24289405
>gb|AACV01008082.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008082, whole
genome shotgun sequence
Length = 60297
Score = 430 bits (217), Expect = e-118
Identities = 359/404 (88%), Gaps = 2/404 (0%)
Strand = Plus / Minus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||| |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 43277 gctcaacgagctggtcctcctcaacagcggcatctcgtcgtgcatcccgccggagatcgg 43218
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| ||||||||||||| | | |||||||| | |||||
Sbjct: 43217 caagctggacaagctcaccgtgctcgacctcagcttcaacgacttcgccggcgcgctgcc 43158
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 43157 ggagaccatcggccacatgcgggcgctggagcagctcaacgtcgcgcacaacggcctcgc 43098
Query: 181 cggcgagataccggagagcgt-ctgcggc-ctgccgcacctcaagaacttcacctactcg 238
||||||||| ||||| | | ||||| | || ||||||||||||||||||||||||||
Sbjct: 43097 cggcgagatcccggactccatgctgcgccgctcccgcacctcaagaacttcacctactcc 43038
Query: 239 tacaacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgc 298
|||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 43037 cacaacttcttctgcggcgagccgcaccgctgcctcgaggtgccgcacgttgacgaccgc 42978
Query: 299 cagaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctg 358
||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 42977 cagaactgcatcgccggccgccccgaccagcgctccggcgaggagtgcatcgcgttcctg 42918
Query: 359 caccagccgagggtgcgctgcgacgcccacgggtgcatcgcgcc 402
|||| ||| ||||| ||||||||| ||||| |||||||||||
Sbjct: 42917 caccgcccgccggtgcactgcgacgcgcacggctgcatcgcgcc 42874
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 430 bits (217), Expect = e-118
Identities = 359/404 (88%), Gaps = 2/404 (0%)
Strand = Plus / Minus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||| |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 6488130 gctcaacgagctggtcctcctcaacagcggcatctcgtcgtgcatcccgccggagatcgg 6488071
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| ||||||||||||| | | |||||||| | |||||
Sbjct: 6488070 caagctggacaagctcaccgtgctcgacctcagcttcaacgacttcgccggcgcgctgcc 6488011
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 6488010 ggagaccatcggccacatgcgggcgctggagcagctcaacgtcgcgcacaacggcctcgc 6487951
Query: 181 cggcgagataccggagagcgt-ctgcggc-ctgccgcacctcaagaacttcacctactcg 238
||||||||| ||||| | | ||||| | || ||||||||||||||||||||||||||
Sbjct: 6487950 cggcgagatcccggactccatgctgcgccgctcccgcacctcaagaacttcacctactcc 6487891
Query: 239 tacaacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgc 298
|||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 6487890 cacaacttcttctgcggcgagccgcaccgctgcctcgaggtgccgcacgttgacgaccgc 6487831
Query: 299 cagaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctg 358
||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 6487830 cagaactgcatcgccggccgccccgaccagcgctccggcgaggagtgcatcgcgttcctg 6487771
Query: 359 caccagccgagggtgcgctgcgacgcccacgggtgcatcgcgcc 402
|||| ||| ||||| ||||||||| ||||| |||||||||||
Sbjct: 6487770 caccgcccgccggtgcactgcgacgcgcacggctgcatcgcgcc 6487727
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 430 bits (217), Expect = e-118
Identities = 359/404 (88%), Gaps = 2/404 (0%)
Strand = Plus / Minus
Query: 1 gctcaacgatctgatcctgctcaacagcggcatctcctcctgcatcccgcccgagatcgg 60
||||||||| ||| |||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 33754293 gctcaacgagctggtcctcctcaacagcggcatctcgtcgtgcatcccgccggagatcgg 33754234
Query: 61 caagctggccaagctcnccgtgctggacctcagcttcaccagcatcgccggcaccctgcc 120
|||||||| ||||||| ||||||| ||||||||||||| | | |||||||| | |||||
Sbjct: 33754233 caagctggacaagctcaccgtgctcgacctcagcttcaacgacttcgccggcgcgctgcc 33754174
Query: 121 ggacacgatcggcaacatgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgc 180
||| || |||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 33754173 ggagaccatcggccacatgcgggcgctggagcagctcaacgtcgcgcacaacggcctcgc 33754114
Query: 181 cggcgagataccggagagcgt-ctgcggc-ctgccgcacctcaagaacttcacctactcg 238
||||||||| ||||| | | ||||| | || ||||||||||||||||||||||||||
Sbjct: 33754113 cggcgagatcccggactccatgctgcgccgctcccgcacctcaagaacttcacctactcc 33754054
Query: 239 tacaacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgc 298
|||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 33754053 cacaacttcttctgcggcgagccgcaccgctgcctcgaggtgccgcacgttgacgaccgc 33753994
Query: 299 cagaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctg 358
||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 33753993 cagaactgcatcgccggccgccccgaccagcgctccggcgaggagtgcatcgcgttcctg 33753934
Query: 359 caccagccgagggtgcgctgcgacgcccacgggtgcatcgcgcc 402
|||| ||| ||||| ||||||||| ||||| |||||||||||
Sbjct: 33753933 caccgcccgccggtgcactgcgacgcgcacggctgcatcgcgcc 33753890
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 40 ctgcatcccgcccgagatcggcaagctg 67
|||||||||||| |||||||||||||||
Sbjct: 24773107 ctgcatcccgccggagatcggcaagctg 24773080
>gb|AU092661.1|AU092661 AU092661 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52782, mRNA sequence
Length = 689
Score = 186 bits (94), Expect = 1e-044
Identities = 223/266 (83%)
Strand = Plus / Plus
Query: 137 atgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggag 196
|||||| |||||||||||||||||||||||| |||| ||||||||| | || ||||||
Sbjct: 140 atgcggtcgctggagcagctcgacgtcgcgcgcaacgagctcgccggccacatcccggag 199
Query: 197 agcgtctgcggcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggc 256
| |||||| ||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 200 gggatctgcgcgctgccgcggctcaggaacttcacctactcatacaactacttctgcggc 259
Query: 257 gagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgccagaactgcatcgccggg 316
|||||| | ||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 260 gagccggagcggtgcctccgcctccgccgcgtcgacgaccgccagaactgcatcgccggg 319
Query: 317 cgccccgaccagcgcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgc 376
| |||||||||||||||| ||| ||||| || | ||||| |||| ||| ||||| |
Sbjct: 320 aggcccgaccagcgcccggccgaccagtgcctcgccttcctccaccgcccgccggtgcac 379
Query: 377 tgcgacgcccacgggtgcatcgcgcc 402
|||||||||||||| ||| |||||||
Sbjct: 380 tgcgacgcccacggctgcttcgcgcc 405
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0534H07
Length = 144689
Score = 186 bits (94), Expect = 1e-044
Identities = 223/266 (83%)
Strand = Plus / Minus
Query: 137 atgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggag 196
|||||| |||||||||||||||||||||||| |||| ||||||||| | || ||||||
Sbjct: 54968 atgcggtcgctggagcagctcgacgtcgcgcgcaacgagctcgccggccacatcccggag 54909
Query: 197 agcgtctgcggcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggc 256
| |||||| ||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 54908 gggatctgcgcgctgccgcggctcaggaacttcacctactcatacaactacttctgcggc 54849
Query: 257 gagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgccagaactgcatcgccggg 316
|||||| | ||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 54848 gagccggagcggtgcctccgcctccgccgcgtcgacgaccgccagaactgcatcgccggg 54789
Query: 317 cgccccgaccagcgcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgc 376
| |||||||||||||||| ||| ||||| || | ||||| |||| ||| ||||| |
Sbjct: 54788 aggcccgaccagcgcccggccgaccagtgcctcgccttcctccaccgcccgccggtgcac 54729
Query: 377 tgcgacgcccacgggtgcatcgcgcc 402
|||||||||||||| ||| |||||||
Sbjct: 54728 tgcgacgcccacggctgcttcgcgcc 54703
>gb|AACV01015282.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015282, whole
genome shotgun sequence
Length = 1598
Score = 186 bits (94), Expect = 1e-044
Identities = 223/266 (83%)
Strand = Plus / Minus
Query: 137 atgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggag 196
|||||| |||||||||||||||||||||||| |||| ||||||||| | || ||||||
Sbjct: 1318 atgcggtcgctggagcagctcgacgtcgcgcgcaacgagctcgccggccacatcccggag 1259
Query: 197 agcgtctgcggcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggc 256
| |||||| ||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 1258 gggatctgcgcgctgccgcggctcaggaacttcacctactcatacaactacttctgcggc 1199
Query: 257 gagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgccagaactgcatcgccggg 316
|||||| | ||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 1198 gagccggagcggtgcctccgcctccgccgcgtcgacgaccgccagaactgcatcgccggg 1139
Query: 317 cgccccgaccagcgcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgc 376
| |||||||||||||||| ||| ||||| || | ||||| |||| ||| ||||| |
Sbjct: 1138 aggcccgaccagcgcccggccgaccagtgcctcgccttcctccaccgcccgccggtgcac 1079
Query: 377 tgcgacgcccacgggtgcatcgcgcc 402
|||||||||||||| ||| |||||||
Sbjct: 1078 tgcgacgcccacggctgcttcgcgcc 1053
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 186 bits (94), Expect = 1e-044
Identities = 223/266 (83%)
Strand = Plus / Minus
Query: 137 atgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggag 196
|||||| |||||||||||||||||||||||| |||| ||||||||| | || ||||||
Sbjct: 4018182 atgcggtcgctggagcagctcgacgtcgcgcgcaacgagctcgccggccacatcccggag 4018123
Query: 197 agcgtctgcggcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggc 256
| |||||| ||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 4018122 gggatctgcgcgctgccgcggctcaggaacttcacctactcatacaactacttctgcggc 4018063
Query: 257 gagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgccagaactgcatcgccggg 316
|||||| | ||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 4018062 gagccggagcggtgcctccgcctccgccgcgtcgacgaccgccagaactgcatcgccggg 4018003
Query: 317 cgccccgaccagcgcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgc 376
| |||||||||||||||| ||| ||||| || | ||||| |||| ||| ||||| |
Sbjct: 4018002 aggcccgaccagcgcccggccgaccagtgcctcgccttcctccaccgcccgccggtgcac 4017943
Query: 377 tgcgacgcccacgggtgcatcgcgcc 402
|||||||||||||| ||| |||||||
Sbjct: 4017942 tgcgacgcccacggctgcttcgcgcc 4017917
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 186 bits (94), Expect = 1e-044
Identities = 223/266 (83%)
Strand = Plus / Minus
Query: 137 atgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggag 196
|||||| |||||||||||||||||||||||| |||| ||||||||| | || ||||||
Sbjct: 1132699 atgcggtcgctggagcagctcgacgtcgcgcgcaacgagctcgccggccacatcccggag 1132640
Query: 197 agcgtctgcggcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggc 256
| |||||| ||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 1132639 gggatctgcgcgctgccgcggctcaggaacttcacctactcatacaactacttctgcggc 1132580
Query: 257 gagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgccagaactgcatcgccggg 316
|||||| | ||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 1132579 gagccggagcggtgcctccgcctccgccgcgtcgacgaccgccagaactgcatcgccggg 1132520
Query: 317 cgccccgaccagcgcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgc 376
| |||||||||||||||| ||| ||||| || | ||||| |||| ||| ||||| |
Sbjct: 1132519 aggcccgaccagcgcccggccgaccagtgcctcgccttcctccaccgcccgccggtgcac 1132460
Query: 377 tgcgacgcccacgggtgcatcgcgcc 402
|||||||||||||| ||| |||||||
Sbjct: 1132459 tgcgacgcccacggctgcttcgcgcc 1132434
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 186 bits (94), Expect = 1e-044
Identities = 223/266 (83%)
Strand = Plus / Minus
Query: 137 atgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggag 196
|||||| |||||||||||||||||||||||| |||| ||||||||| | || ||||||
Sbjct: 3949448 atgcggtcgctggagcagctcgacgtcgcgcgcaacgagctcgccggccacatcccggag 3949389
Query: 197 agcgtctgcggcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggc 256
| |||||| ||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 3949388 gggatctgcgcgctgccgcggctcaggaacttcacctactcatacaactacttctgcggc 3949329
Query: 257 gagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgccagaactgcatcgccggg 316
|||||| | ||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 3949328 gagccggagcggtgcctccgcctccgccgcgtcgacgaccgccagaactgcatcgccggg 3949269
Query: 317 cgccccgaccagcgcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgc 376
| |||||||||||||||| ||| ||||| || | ||||| |||| ||| ||||| |
Sbjct: 3949268 aggcccgaccagcgcccggccgaccagtgcctcgccttcctccaccgcccgccggtgcac 3949209
Query: 377 tgcgacgcccacgggtgcatcgcgcc 402
|||||||||||||| ||| |||||||
Sbjct: 3949208 tgcgacgcccacggctgcttcgcgcc 3949183
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 186 bits (94), Expect = 1e-044
Identities = 223/266 (83%)
Strand = Plus / Minus
Query: 137 atgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggag 196
|||||| |||||||||||||||||||||||| |||| ||||||||| | || ||||||
Sbjct: 4062110 atgcggtcgctggagcagctcgacgtcgcgcgcaacgagctcgccggccacatcccggag 4062051
Query: 197 agcgtctgcggcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggc 256
| |||||| ||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 4062050 gggatctgcgcgctgccgcggctcaggaacttcacctactcatacaactacttctgcggc 4061991
Query: 257 gagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgccagaactgcatcgccggg 316
|||||| | ||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 4061990 gagccggagcggtgcctccgcctccgccgcgtcgacgaccgccagaactgcatcgccggg 4061931
Query: 317 cgccccgaccagcgcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgc 376
| |||||||||||||||| ||| ||||| || | ||||| |||| ||| ||||| |
Sbjct: 4061930 aggcccgaccagcgcccggccgaccagtgcctcgccttcctccaccgcccgccggtgcac 4061871
Query: 377 tgcgacgcccacgggtgcatcgcgcc 402
|||||||||||||| ||| |||||||
Sbjct: 4061870 tgcgacgcccacggctgcttcgcgcc 4061845
>gb|AU032129.1|AU032129 AU032129 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3611_4Z, mRNA sequence
Length = 739
Score = 178 bits (90), Expect = 2e-042
Identities = 213/254 (83%)
Strand = Plus / Plus
Query: 137 atgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggag 196
|||||| |||||||||||||||||||||||| |||| ||||||||| | || ||||||
Sbjct: 185 atgcggtcgctggagcagctcgacgtcgcgcgcaacgagctcgccggccacatcccggag 244
Query: 197 agcgtctgcggcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggc 256
| |||||| ||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 245 gggatctgcgcgctgccgcggctcaggaacttcacctactcatacaactacttctgcggc 304
Query: 257 gagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgccagaactgcatcgccggg 316
|||||| | ||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 305 gagccggagcggtgcctccgcctccgccgcgtcgacgaccgccagaactgcatcgccggg 364
Query: 317 cgccccgaccagcgcccgggcgaggagtgcatctcgttcctgcaccagccgagggtgcgc 376
| |||||||||||||||| ||| ||||| || | ||||| |||| ||| ||||| |
Sbjct: 365 aggcccgaccagcgcccggccgaccagtgcctcgccttcctccaccgcccgccggtgcac 424
Query: 377 tgcgacgcccacgg 390
||||||||||||||
Sbjct: 425 tgcgacgcccacgg 438
>gb|C22351.1|C22351 C22351 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C11283_3Z, mRNA sequence
Length = 462
Score = 131 bits (66), Expect = 5e-028
Identities = 141/166 (84%)
Strand = Plus / Plus
Query: 225 acttcacctactcgtacaacttcttctgcggcgagccgcaccggtgcctcgaggtgccgc 284
||||||||||||| ||||||| |||||||||||||||| | ||||||||| | | |
Sbjct: 1 acttcacctactcatacaactacttctgcggcgagccggagcggtgcctccgcctccgcc 60
Query: 285 gcgtcgacgaccgccagaactgcatcgccgggcgccccgaccagcgcccgggcgaggagt 344
|||||||||||||||||||||||||||||||| | |||||||||||||||| ||| |||
Sbjct: 61 gcgtcgacgaccgccagaactgcatcgccgggaggcccgaccagcgcccggccgaccagt 120
Query: 345 gcatctcgttcctgcaccagccgagggtgcgctgcgacgcccacgg 390
|| || | ||||| |||| ||| ||||| |||||||||||||||
Sbjct: 121 gcctcgccttcctccaccgcccgccggtgcactgcgacgcccacgg 166
>gb|AU181509.1|AU181509 AU181509 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C50038, mRNA sequence
Length = 454
Score = 119 bits (60), Expect = 2e-024
Identities = 138/164 (84%)
Strand = Plus / Plus
Query: 239 tacaacttcttctgcggcgagccgcaccggtgcctcgaggtgccgcgcgtcgacgaccgc 298
||||||| |||||||||||||||| | ||||||||| | | |||||||||||||||
Sbjct: 4 tacaactacttctgcggcgagccggagcggtgcctccgcctccgccgcgtcgacgaccgc 63
Query: 299 cagaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctcgttcctg 358
|||||||||||||||||| | |||||||||||||||| ||| ||||| || | |||||
Sbjct: 64 cagaactgcatcgccgggaggcccgaccagcgcccggccgaccagtgcctcgccttcctc 123
Query: 359 caccagccgagggtgcgctgcgacgcccacgggtgcatcgcgcc 402
|||| ||| ||||| ||||||||||||||| ||| |||||||
Sbjct: 124 caccgcccgccggtgcactgcgacgcccacggctgcttcgcgcc 167
>gb|AACV01011020.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011020, whole
genome shotgun sequence
Length = 35223
Score = 113 bits (57), Expect = 1e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||
Sbjct: 24728 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgtgccggaggccgtgtgcg 24787
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||| | ||||||||||||||||| ||| ||||||| |||| |||||||||||
Sbjct: 24788 acctgccccgcctcaagaacttcaccttctcctacaactacttcaccggcgagccgc 24844
>ref|XM_476068.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1245
Score = 113 bits (57), Expect = 1e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||
Sbjct: 872 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgtgccggaggccgtgtgcg 931
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||| | ||||||||||||||||| ||| ||||||| |||| |||||||||||
Sbjct: 932 acctgccccgcctcaagaacttcaccttctcctacaactacttcaccggcgagccgc 988
>ref|NT_107223.1| Oryza sativa (japonica cultivar-group)
Length = 1494033
Score = 113 bits (57), Expect = 1e-022
Identities = 102/117 (87%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||
Sbjct: 833911 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgtgccggaggccgtgtgcg 833852
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||| | ||||||||||||||||| ||| ||||||| |||| |||||||||||
Sbjct: 833851 acctgccccgcctcaagaacttcaccttctcctacaactacttcaccggcgagccgc 833795
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
complete sequence
Length = 187956
Score = 113 bits (57), Expect = 1e-022
Identities = 102/117 (87%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||
Sbjct: 29047 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgtgccggaggccgtgtgcg 28988
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||| | ||||||||||||||||| ||| ||||||| |||| |||||||||||
Sbjct: 28987 acctgccccgcctcaagaacttcaccttctcctacaactacttcaccggcgagccgc 28931
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 113 bits (57), Expect = 1e-022
Identities = 102/117 (87%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||
Sbjct: 4648044 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgtgccggaggccgtgtgcg 4647985
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||| | ||||||||||||||||| ||| ||||||| |||| |||||||||||
Sbjct: 4647984 acctgccccgcctcaagaacttcaccttctcctacaactacttcaccggcgagccgc 4647928
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 113 bits (57), Expect = 1e-022
Identities = 102/117 (87%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||
Sbjct: 4648044 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgtgccggaggccgtgtgcg 4647985
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||| | ||||||||||||||||| ||| ||||||| |||| |||||||||||
Sbjct: 4647984 acctgccccgcctcaagaacttcaccttctcctacaactacttcaccggcgagccgc 4647928
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
complete sequence
Length = 145070
Score = 113 bits (57), Expect = 1e-022
Identities = 102/117 (87%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||
Sbjct: 124644 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgtgccggaggccgtgtgcg 124585
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||| | ||||||||||||||||| ||| ||||||| |||| |||||||||||
Sbjct: 124584 acctgccccgcctcaagaacttcaccttctcctacaactacttcaccggcgagccgc 124528
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 113 bits (57), Expect = 1e-022
Identities = 102/117 (87%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||
Sbjct: 4756639 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgtgccggaggccgtgtgcg 4756580
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||| | ||||||||||||||||| ||| ||||||| |||| |||||||||||
Sbjct: 4756579 acctgccccgcctcaagaacttcaccttctcctacaactacttcaccggcgagccgc 4756523
>dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D06, full
insert sequence
Length = 2042
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 149 gagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggc 208
|||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||| |
Sbjct: 992 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 1051
Query: 209 ctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 1052 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgc 1106
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 1131 tcgacgatcgccggaactgcatccccggccgccccgaccag 1171
>dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A04, full
insert sequence
Length = 1985
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 149 gagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggc 208
|||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||| |
Sbjct: 993 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 1052
Query: 209 ctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 1053 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgc 1107
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 1132 tcgacgatcgccggaactgcatccccggccgccccgaccag 1172
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1103C09
Length = 163996
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 149 gagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggc 208
|||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||| |
Sbjct: 8039 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 8098
Query: 209 ctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 8099 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgc 8153
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 8178 tcgacgatcgccggaactgcatccccggccgccccgaccag 8218
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0451D05
Length = 148381
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 149 gagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggc 208
|||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||| |
Sbjct: 69083 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 69142
Query: 209 ctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 69143 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgc 69197
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 69222 tcgacgatcgccggaactgcatccccggccgccccgaccag 69262
>gb|AACV01001725.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001725, whole
genome shotgun sequence
Length = 24955
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Minus
Query: 149 gagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggc 208
|||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||| |
Sbjct: 1973 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 1914
Query: 209 ctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 1913 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgc 1859
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 1834 tcgacgatcgccggaactgcatccccggccgccccgaccag 1794
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 149 gagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggc 208
|||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||| |
Sbjct: 23361058 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 23361117
Query: 209 ctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 23361118 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgc 23361172
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||| ||| | || | ||||||| || || ||||
Sbjct: 4177248 tggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcg 4177189
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
||||||| ||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 4177188 agctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgc 4177132
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 23361197 tcgacgatcgccggaactgcatccccggccgccccgaccag 23361237
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 26987484 cgccacctccacctccaccta 26987504
>ref|NM_192605.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1713
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 149 gagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggc 208
|||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||| |
Sbjct: 934 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 993
Query: 209 ctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 994 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgc 1048
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 1073 tcgacgatcgccggaactgcatccccggccgccccgaccag 1113
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 149 gagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggc 208
|||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||| |
Sbjct: 6279290 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 6279349
Query: 209 ctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 6279350 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgc 6279404
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 6279429 tcgacgatcgccggaactgcatccccggccgccccgaccag 6279469
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 149 gagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggc 208
|||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||| |
Sbjct: 6191144 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 6191203
Query: 209 ctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 6191204 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgc 6191258
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 6191283 tcgacgatcgccggaactgcatccccggccgccccgaccag 6191323
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 149 gagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggc 208
|||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||| |
Sbjct: 22816267 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 22816326
Query: 209 ctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 22816327 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgc 22816381
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||| ||| | || | ||||||| || || ||||
Sbjct: 4216674 tggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcg 4216615
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
||||||| ||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 4216614 agctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgc 4216558
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 22816406 tcgacgatcgccggaactgcatccccggccgccccgaccag 22816446
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 26588318 cgccacctccacctccaccta 26588338
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 149 gagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcggc 208
|||||||||||| ||| ||||||||||||| ||||||| | |||||| || ||||| |
Sbjct: 23282341 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 23282400
Query: 209 ctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
|||||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct: 23282401 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgc 23282455
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||| ||| | || | ||||||| || || ||||
Sbjct: 4179446 tggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcg 4179387
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
||||||| ||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 4179386 agctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgc 4179330
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 23282480 tcgacgatcgccggaactgcatccccggccgccccgaccag 23282520
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 26906814 cgccacctccacctccaccta 26906834
>dbj|AK062887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-D11, full
insert sequence
Length = 1302
Score = 101 bits (51), Expect = 5e-019
Identities = 105/123 (85%)
Strand = Plus / Plus
Query: 137 atgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggag 196
|||||| |||||||||||||||||||||||| |||| ||||||||| | || ||||||
Sbjct: 896 atgcggtcgctggagcagctcgacgtcgcgcgcaacgagctcgccggccacatcccggag 955
Query: 197 agcgtctgcggcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggc 256
| |||||| ||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 956 gggatctgcgcgctgccgcggctcaggaacttcacctactcatacaactacttctgcggc 1015
Query: 257 gag 259
|||
Sbjct: 1016 gag 1018
>dbj|AK103199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A11, full
insert sequence
Length = 2207
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||| ||| | || | ||||||| || || ||||
Sbjct: 968 tggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcg 1027
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
||||||| ||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 1028 agctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgc 1084
>gb|AACV01000298.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000298, whole
genome shotgun sequence
Length = 12784
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||| ||| | || | ||||||| || || ||||
Sbjct: 6242 tggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcg 6183
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
||||||| ||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 6182 agctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgc 6126
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0406H10
Length = 156419
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||| ||| | || | ||||||| || || ||||
Sbjct: 126417 tggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcg 126358
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
||||||| ||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 126357 agctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgc 126301
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1174_D05
Length = 128525
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||| ||| | || | ||||||| || || ||||
Sbjct: 17413 tggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcg 17354
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
||||||| ||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 17353 agctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgc 17297
>ref|NM_189545.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1740
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||| ||| | || | ||||||| || || ||||
Sbjct: 866 tggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcg 925
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
||||||| ||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 926 agctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgc 982
>ref|XM_550392.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2207
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||| ||| | || | ||||||| || || ||||
Sbjct: 968 tggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcg 1027
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
||||||| ||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 1028 agctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgc 1084
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||| ||| | || | ||||||| || || ||||
Sbjct: 4177088 tggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcg 4177029
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
||||||| ||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 4177028 agctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgc 4176972
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 89.7 bits (45), Expect = 2e-015
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 147 tggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggagagcgtctgcg 206
||||||||||||||||||||||||||| ||| | || | ||||||| || || ||||
Sbjct: 4216674 tggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggcggtgtgcg 4216615
Query: 207 gcctgccgcacctcaagaacttcacctactcgtacaacttcttctgcggcgagccgc 263
||||||| ||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct: 4216614 agctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcgagccgc 4216558
>gb|C22382.1|C22382 C22382 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C12741_5Z, mRNA sequence
Length = 460
Score = 85.7 bits (43), Expect = 3e-014
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 292 cgaccgccagaactgcatcgccgggcgccccgaccagcgcccgggcgaggagtgcatctc 351
||||||||||||||||||||||||| | |||||||||||||||| ||| ||||| || |
Sbjct: 1 cgaccgccagaactgcatcgccgggaggcccgaccagcgcccggccgaccagtgcctcgc 60
Query: 352 gttcctgcaccagccgagggtgcgctgcgacgcccacgg 390
||||| |||| ||| ||||| |||||||||||||||
Sbjct: 61 cttcctccaccgcccgccggtgcactgcgacgcccacgg 99
>ref|XM_476821.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1301
Score = 81.8 bits (41), Expect = 4e-013
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 137 atgcgggcgctggagcagctcgacgtcgcgcacaaccgcctcgccggcgagataccggag 196
|||||| |||||||||||||||||||||||| |||| ||||||||| | || ||||||
Sbjct: 896 atgcggtcgctggagcagctcgacgtcgcgcgcaacgagctcgccggccacatcccggag 955
Query: 197 agcgtctgcggcctgccgcacctcaagaacttcacctactcgtacaact 245
| |||||| ||||||| |||| ||||||||||||||| |||||||
Sbjct: 956 gggatctgcgcgctgccgcggctcaggaacttcacctactcatacaact 1004
>gb|D41575.1|D41575 RICS4159A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 297
Score = 79.8 bits (40), Expect = 2e-012
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 172 ccgcctcgccggcgagataccggagagcgtctgcggcctgccgcacctcaagaacttcac 231
||||||| ||||||| | |||||| || ||||| ||||||||||||| ||||||||||
Sbjct: 13 ccgcctcaccggcgacgtgccggagggcatctgccacctgccgcacctccagaacttcac 72
Query: 232 ctactcgtacaacttcttctgcggcgagccgc 263
|||||| ||||||||| || |||||||||||
Sbjct: 73 ctactcctacaacttcatcaccggcgagccgc 104
Score = 52.0 bits (26), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 288 tcgacgaccgccagaactgcatcgccgggcgccccgaccag 328
||||||| |||| |||||||||| |||| ||||||||||||
Sbjct: 129 tcgacgatcgccggaactgcatccccggncgccccgaccag 169
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,107,571
Number of Sequences: 438736
Number of extensions: 1107571
Number of successful extensions: 14002
Number of sequences better than 0.5: 111
Number of HSP's better than 0.5 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12505
Number of HSP's gapped (non-prelim): 1497
length of query: 649
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 628
effective length of database: 2,791,206,460
effective search space: 1752877656880
effective search space used: 1752877656880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)