BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.1
(1469 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_475449.1| Oryza sativa (japonica cultivar-group), p... 1068 0.0
gb|AC093952.2| Oryza sativa (japonica cultivar-group) chrom... 745 0.0
gb|AC118289.2| Oryza sativa (japonica cultivar-group) chrom... 745 0.0
gb|AACV01012443.1| Oryza sativa (japonica cultivar-group) c... 745 0.0
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 745 0.0
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 745 0.0
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 745 0.0
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 745 0.0
dbj|AK100654.1| Oryza sativa (japonica cultivar-group) cDNA... 424 e-116
ref|NM_191079.1| Oryza sativa (japonica cultivar-group), p... 424 e-116
gb|AACV01002567.1| Oryza sativa (japonica cultivar-group) c... 283 1e-073
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 283 1e-073
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 283 1e-073
dbj|AP003255.3| Oryza sativa (japonica cultivar-group) geno... 283 1e-073
dbj|AP003411.4| Oryza sativa (japonica cultivar-group) geno... 283 1e-073
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 283 1e-073
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 283 1e-073
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 283 1e-073
gb|C73196.1|C73196 C73196 Rice panicle at flowering stage O... 276 3e-071
gb|AU101215.1|AU101215 AU101215 Rice panicle at flowering s... 264 1e-067
gb|C72996.1|C72996 C72996 Rice panicle at flowering stage O... 236 3e-059
gb|C71978.1|C71978 C71978 Rice panicle at flowering stage O... 202 4e-049
gb|C72986.1|C72986 C72986 Rice panicle at flowering stage O... 121 1e-024
gb|AU093980.1|AU093980 AU093980 Rice panicle at flowering s... 103 3e-019
dbj|AP004262.2| Oryza sativa (japonica cultivar-group) geno... 94 3e-016
dbj|AK102922.1| Oryza sativa (japonica cultivar-group) cDNA... 94 3e-016
gb|AACV01015064.1| Oryza sativa (japonica cultivar-group) c... 94 3e-016
ref|XM_476421.1| Oryza sativa (japonica cultivar-group), mRNA 94 3e-016
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 94 3e-016
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 94 3e-016
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 94 3e-016
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 94 3e-016
gb|C72449.1|C72449 C72449 Rice panicle at flowering stage O... 86 6e-014
gb|AU312207.1|AU312207 AU312207 Oryza sativa anther cDNA Or... 78 2e-011
ref|NM_194185.1| Oryza sativa (japonica cultivar-group), mRNA 78 2e-011
gb|C71990.1|C71990 C71990 Rice panicle at flowering stage O... 72 9e-010
gb|AU101073.1|AU101073 AU101073 Rice panicle at flowering s... 60 4e-006
dbj|AK070790.1| Oryza sativa (japonica cultivar-group) cDNA... 56 6e-005
dbj|AK071517.1| Oryza sativa (japonica cultivar-group) cDNA... 56 6e-005
gb|AACV01010279.1| Oryza sativa (japonica cultivar-group) c... 56 6e-005
ref|XM_473496.1| Oryza sativa (japonica cultivar-group), p... 56 6e-005
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 56 6e-005
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 56 6e-005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 56 6e-005
emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromoso... 56 6e-005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 56 6e-005
ref|XM_478354.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-004
gb|AU181257.1|AU181257 AU181257 Rice callus (2001) Oryza sa... 48 0.014
gb|AY224490.1| Oryza sativa (japonica cultivar-group) isola... 48 0.014
gb|AACV01016348.1| Oryza sativa (japonica cultivar-group) c... 48 0.014
dbj|AP005185.4| Oryza sativa (japonica cultivar-group) geno... 48 0.014
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.014
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.014
gb|AU182505.1|AU182505 AU182505 Rice panicle at flowering s... 46 0.054
ref|NM_197271.1| Oryza sativa (japonica cultivar-group) put... 46 0.054
>ref|XM_475449.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1671
Score = 1068 bits (539), Expect = 0.0
Identities = 913/1037 (88%), Gaps = 3/1037 (0%)
Strand = Plus / Plus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| ||||| ||||||| |||||||||||||| |||||||| |||||| ||| |
Sbjct: 626 cgcccatgttcaccgtcgaggccggcaagacgtaccggctccgcgtctgcaacgtcggca 685
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 686 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctggtggagatggagg 745
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || || |||||||| |||||||||| || ||||| |||||||||||||||||||
Sbjct: 746 gctcccacacggtgcaggacatgtacgactccctcgacgtccacgtcggccactgcctct 805
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccacgcggt 246
|||| || ||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 806 ccgtcctcgtcgacgccgaccagaagcccggcgactactacgcggtggcgtccacgcggt 865
Query: 247 tcatccacgacgccaagtccgcctccgccgtcatccgctacgccggctccagcggcgccc 306
|||||||||| |||||||| | || ||||||||||||||||||||||| ||| | |
Sbjct: 866 tcatccacgaggccaagtcggtgtcagccgtcatccgctacgccggctcgagca---cgc 922
Query: 307 cgccggcgccgaacatgaccgagccaccggccggctgggcctggtccatcaaccaggcca 366
||||| ||||| | || | ||||| ||||| || ||||| ||||| ||||||||| |
Sbjct: 923 cgccgtcgccggccgtgccggagccgccggcgggatgggcgtggtcgatcaaccagtgga 982
Query: 367 ggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagggctcctacc 426
|||||||||| |||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 983 ggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgcaggggtcctacc 1042
Query: 427 actacggccagatcaacatcacccgcaccatcaaggtcatggtctcccgcggccacatcg 486
|||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||
Sbjct: 1043 actacggccagatcaacatcacgcgcaccatcaggctcatggtctcccggggccacatcg 1102
Query: 487 acggcaagctccgctacggcttcaacggcatctcccatagggaccccgagacccccgtga 546
||||||||||| ||||||||||| ||| ||||||| ||| ||||||| || | |
Sbjct: 1103 acggcaagctcaagtacggcttcaatggcgtctcccacgtcgacgccgagacgccgctca 1162
Query: 547 agctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgacg 606
||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||
Sbjct: 1163 agctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccgacg 1222
Query: 607 tgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagttcc 666
|||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 1223 tgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagttcc 1282
Query: 667 gcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgtcg 726
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 1283 gcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacctcg 1342
Query: 727 acggctacgccttcttcggcgtcgggatggggcctgggacgtggtcgccggagatgagga 786
|||||||||||||||||| ||||||||||||||| |||| ||||||| ||||| |||||
Sbjct: 1343 acggctacgccttcttcgccgtcgggatggggccggggaagtggtcggcggaggagagga 1402
Query: 787 agacgtacaacctactggacacggtgagccggcacacgatccaggtgtacccgcggtcat 846
||||||||||||| |||||| ||||||||||||| || |||||||||||||| |||| |
Sbjct: 1403 agacgtacaacctgctggacggggtgagccggcactcggtccaggtgtacccgaggtcgt 1462
Query: 847 ggacggcgatcatgctgacattcgacaacgcgggcatgtggagcgtccggtccaacgtct 906
||||||||||||||||||| ||||||||||| || ||||||| ||| |||||||| |||
Sbjct: 1463 ggacggcgatcatgctgacgttcgacaacgccgggatgtggaacgtgaggtccaacatct 1522
Query: 907 gggagcggtactacctcggggagcagttctacatcagcgtcatctcgccggcgcggtcgc 966
||||| || |||||||||| |||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 1523 gggagaggcactacctcggcgagcagctctacatcagcgtcgtctcgccggcgaggtcgc 1582
Query: 967 tgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgc 1026
| || ||||||||||||||||| || |||||||||||||||||||||||||| || ||||
Sbjct: 1583 tccgggacgagtacaacatgccggagaacgccctccgctgcggcaaggtcgtcggcctgc 1642
Query: 1027 cgctgccgccatcctac 1043
|||||||||| ||||||
Sbjct: 1643 cgctgccgccgtcctac 1659
>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02,
complete sequence
Length = 127642
Score = 745 bits (376), Expect = 0.0
Identities = 654/746 (87%), Gaps = 3/746 (0%)
Strand = Plus / Minus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| ||||| ||||||| |||||||||||||| |||||||| |||||| ||| |
Sbjct: 20944 cgcccatgttcaccgtcgaggccggcaagacgtaccggctccgcgtctgcaacgtcggca 20885
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 20884 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctggtggagatggagg 20825
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || || |||||||| |||||||||| || ||||| |||||||||||||||||||
Sbjct: 20824 gctcccacacggtgcaggacatgtacgactccctcgacgtccacgtcggccactgcctct 20765
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccacgcggt 246
|||| || ||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 20764 ccgtcctcgtcgacgccgaccagaagcccggcgactactacgcggtggcgtccacgcggt 20705
Query: 247 tcatccacgacgccaagtccgcctccgccgtcatccgctacgccggctccagcggcgccc 306
|||||||||| |||||||| | || ||||||||||||||||||||||| ||| | |
Sbjct: 20704 tcatccacgaggccaagtcggtgtcagccgtcatccgctacgccggctcgagca---cgc 20648
Query: 307 cgccggcgccgaacatgaccgagccaccggccggctgggcctggtccatcaaccaggcca 366
||||| ||||| | || | ||||| ||||| || ||||| ||||| ||||||||| |
Sbjct: 20647 cgccgtcgccggccgtgccggagccgccggcgggatgggcgtggtcgatcaaccagtgga 20588
Query: 367 ggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagggctcctacc 426
|||||||||| |||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 20587 ggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgcaggggtcctacc 20528
Query: 427 actacggccagatcaacatcacccgcaccatcaaggtcatggtctcccgcggccacatcg 486
|||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||
Sbjct: 20527 actacggccagatcaacatcacgcgcaccatcaggctcatggtctcccggggccacatcg 20468
Query: 487 acggcaagctccgctacggcttcaacggcatctcccatagggaccccgagacccccgtga 546
||||||||||| ||||||||||| ||| ||||||| ||| ||||||| || | |
Sbjct: 20467 acggcaagctcaagtacggcttcaatggcgtctcccacgtcgacgccgagacgccgctca 20408
Query: 547 agctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgacg 606
||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||
Sbjct: 20407 agctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccgacg 20348
Query: 607 tgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagttcc 666
|||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 20347 tgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagttcc 20288
Query: 667 gcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgtcg 726
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 20287 gcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacctcg 20228
Query: 727 acggctacgccttcttcggcgtcggg 752
|||||||||||||||||| |||||||
Sbjct: 20227 acggctacgccttcttcgccgtcggg 20202
Score = 327 bits (165), Expect = 1e-086
Identities = 261/293 (89%)
Strand = Plus / Minus
Query: 751 ggatggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacgg 810
|||||||||| |||| ||||||| ||||| |||||||||||||||||| |||||| ||
Sbjct: 19639 ggatggggccggggaagtggtcggcggaggagaggaagacgtacaacctgctggacgggg 19580
Query: 811 tgagccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcg 870
||||||||||| || |||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct: 19579 tgagccggcactcggtccaggtgtacccgaggtcgtggacggcgatcatgctgacgttcg 19520
Query: 871 acaacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagc 930
||||||| || ||||||| ||| |||||||| |||||||| || |||||||||| ||||
Sbjct: 19519 acaacgccgggatgtggaacgtgaggtccaacatctgggagaggcactacctcggcgagc 19460
Query: 931 agttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccg 990
|| |||||||||||||| ||||||||||| ||||||| || ||||||||||||||||| |
Sbjct: 19459 agctctacatcagcgtcgtctcgccggcgaggtcgctccgggacgagtacaacatgccgg 19400
Query: 991 acaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| |||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 19399 agaacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 19347
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15,
complete sequence
Length = 137357
Score = 745 bits (376), Expect = 0.0
Identities = 654/746 (87%), Gaps = 3/746 (0%)
Strand = Plus / Minus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| ||||| ||||||| |||||||||||||| |||||||| |||||| ||| |
Sbjct: 130076 cgcccatgttcaccgtcgaggccggcaagacgtaccggctccgcgtctgcaacgtcggca 130017
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 130016 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctggtggagatggagg 129957
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || || |||||||| |||||||||| || ||||| |||||||||||||||||||
Sbjct: 129956 gctcccacacggtgcaggacatgtacgactccctcgacgtccacgtcggccactgcctct 129897
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccacgcggt 246
|||| || ||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 129896 ccgtcctcgtcgacgccgaccagaagcccggcgactactacgcggtggcgtccacgcggt 129837
Query: 247 tcatccacgacgccaagtccgcctccgccgtcatccgctacgccggctccagcggcgccc 306
|||||||||| |||||||| | || ||||||||||||||||||||||| ||| | |
Sbjct: 129836 tcatccacgaggccaagtcggtgtcagccgtcatccgctacgccggctcgagca---cgc 129780
Query: 307 cgccggcgccgaacatgaccgagccaccggccggctgggcctggtccatcaaccaggcca 366
||||| ||||| | || | ||||| ||||| || ||||| ||||| ||||||||| |
Sbjct: 129779 cgccgtcgccggccgtgccggagccgccggcgggatgggcgtggtcgatcaaccagtgga 129720
Query: 367 ggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagggctcctacc 426
|||||||||| |||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 129719 ggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgcaggggtcctacc 129660
Query: 427 actacggccagatcaacatcacccgcaccatcaaggtcatggtctcccgcggccacatcg 486
|||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||
Sbjct: 129659 actacggccagatcaacatcacgcgcaccatcaggctcatggtctcccggggccacatcg 129600
Query: 487 acggcaagctccgctacggcttcaacggcatctcccatagggaccccgagacccccgtga 546
||||||||||| ||||||||||| ||| ||||||| ||| ||||||| || | |
Sbjct: 129599 acggcaagctcaagtacggcttcaatggcgtctcccacgtcgacgccgagacgccgctca 129540
Query: 547 agctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgacg 606
||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||
Sbjct: 129539 agctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccgacg 129480
Query: 607 tgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagttcc 666
|||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 129479 tgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagttcc 129420
Query: 667 gcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgtcg 726
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 129419 gcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacctcg 129360
Query: 727 acggctacgccttcttcggcgtcggg 752
|||||||||||||||||| |||||||
Sbjct: 129359 acggctacgccttcttcgccgtcggg 129334
Score = 327 bits (165), Expect = 1e-086
Identities = 261/293 (89%)
Strand = Plus / Minus
Query: 751 ggatggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacgg 810
|||||||||| |||| ||||||| ||||| |||||||||||||||||| |||||| ||
Sbjct: 128771 ggatggggccggggaagtggtcggcggaggagaggaagacgtacaacctgctggacgggg 128712
Query: 811 tgagccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcg 870
||||||||||| || |||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct: 128711 tgagccggcactcggtccaggtgtacccgaggtcgtggacggcgatcatgctgacgttcg 128652
Query: 871 acaacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagc 930
||||||| || ||||||| ||| |||||||| |||||||| || |||||||||| ||||
Sbjct: 128651 acaacgccgggatgtggaacgtgaggtccaacatctgggagaggcactacctcggcgagc 128592
Query: 931 agttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccg 990
|| |||||||||||||| ||||||||||| ||||||| || ||||||||||||||||| |
Sbjct: 128591 agctctacatcagcgtcgtctcgccggcgaggtcgctccgggacgagtacaacatgccgg 128532
Query: 991 acaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| |||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 128531 agaacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 128479
>gb|AACV01012443.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012443, whole
genome shotgun sequence
Length = 7078
Score = 745 bits (376), Expect = 0.0
Identities = 654/746 (87%), Gaps = 3/746 (0%)
Strand = Plus / Minus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| ||||| ||||||| |||||||||||||| |||||||| |||||| ||| |
Sbjct: 1293 cgcccatgttcaccgtcgaggccggcaagacgtaccggctccgcgtctgcaacgtcggca 1234
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 1233 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctggtggagatggagg 1174
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || || |||||||| |||||||||| || ||||| |||||||||||||||||||
Sbjct: 1173 gctcccacacggtgcaggacatgtacgactccctcgacgtccacgtcggccactgcctct 1114
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccacgcggt 246
|||| || ||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 1113 ccgtcctcgtcgacgccgaccagaagcccggcgactactacgcggtggcgtccacgcggt 1054
Query: 247 tcatccacgacgccaagtccgcctccgccgtcatccgctacgccggctccagcggcgccc 306
|||||||||| |||||||| | || ||||||||||||||||||||||| ||| | |
Sbjct: 1053 tcatccacgaggccaagtcggtgtcagccgtcatccgctacgccggctcgagca---cgc 997
Query: 307 cgccggcgccgaacatgaccgagccaccggccggctgggcctggtccatcaaccaggcca 366
||||| ||||| | || | ||||| ||||| || ||||| ||||| ||||||||| |
Sbjct: 996 cgccgtcgccggccgtgccggagccgccggcgggatgggcgtggtcgatcaaccagtgga 937
Query: 367 ggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagggctcctacc 426
|||||||||| |||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 936 ggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgcaggggtcctacc 877
Query: 427 actacggccagatcaacatcacccgcaccatcaaggtcatggtctcccgcggccacatcg 486
|||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||
Sbjct: 876 actacggccagatcaacatcacgcgcaccatcaggctcatggtctcccggggccacatcg 817
Query: 487 acggcaagctccgctacggcttcaacggcatctcccatagggaccccgagacccccgtga 546
||||||||||| ||||||||||| ||| ||||||| ||| ||||||| || | |
Sbjct: 816 acggcaagctcaagtacggcttcaatggcgtctcccacgtcgacgccgagacgccgctca 757
Query: 547 agctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgacg 606
||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||
Sbjct: 756 agctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccgacg 697
Query: 607 tgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagttcc 666
|||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 696 tgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagttcc 637
Query: 667 gcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgtcg 726
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 636 gcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacctcg 577
Query: 727 acggctacgccttcttcggcgtcggg 752
|||||||||||||||||| |||||||
Sbjct: 576 acggctacgccttcttcgccgtcggg 551
>ref|NT_107214.1| Oryza sativa (japonica cultivar-group)
Length = 1031295
Score = 745 bits (376), Expect = 0.0
Identities = 654/746 (87%), Gaps = 3/746 (0%)
Strand = Plus / Minus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| ||||| ||||||| |||||||||||||| |||||||| |||||| ||| |
Sbjct: 130076 cgcccatgttcaccgtcgaggccggcaagacgtaccggctccgcgtctgcaacgtcggca 130017
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 130016 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctggtggagatggagg 129957
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || || |||||||| |||||||||| || ||||| |||||||||||||||||||
Sbjct: 129956 gctcccacacggtgcaggacatgtacgactccctcgacgtccacgtcggccactgcctct 129897
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccacgcggt 246
|||| || ||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 129896 ccgtcctcgtcgacgccgaccagaagcccggcgactactacgcggtggcgtccacgcggt 129837
Query: 247 tcatccacgacgccaagtccgcctccgccgtcatccgctacgccggctccagcggcgccc 306
|||||||||| |||||||| | || ||||||||||||||||||||||| ||| | |
Sbjct: 129836 tcatccacgaggccaagtcggtgtcagccgtcatccgctacgccggctcgagca---cgc 129780
Query: 307 cgccggcgccgaacatgaccgagccaccggccggctgggcctggtccatcaaccaggcca 366
||||| ||||| | || | ||||| ||||| || ||||| ||||| ||||||||| |
Sbjct: 129779 cgccgtcgccggccgtgccggagccgccggcgggatgggcgtggtcgatcaaccagtgga 129720
Query: 367 ggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagggctcctacc 426
|||||||||| |||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 129719 ggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgcaggggtcctacc 129660
Query: 427 actacggccagatcaacatcacccgcaccatcaaggtcatggtctcccgcggccacatcg 486
|||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||
Sbjct: 129659 actacggccagatcaacatcacgcgcaccatcaggctcatggtctcccggggccacatcg 129600
Query: 487 acggcaagctccgctacggcttcaacggcatctcccatagggaccccgagacccccgtga 546
||||||||||| ||||||||||| ||| ||||||| ||| ||||||| || | |
Sbjct: 129599 acggcaagctcaagtacggcttcaatggcgtctcccacgtcgacgccgagacgccgctca 129540
Query: 547 agctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgacg 606
||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||
Sbjct: 129539 agctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccgacg 129480
Query: 607 tgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagttcc 666
|||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 129479 tgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagttcc 129420
Query: 667 gcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgtcg 726
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 129419 gcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacctcg 129360
Query: 727 acggctacgccttcttcggcgtcggg 752
|||||||||||||||||| |||||||
Sbjct: 129359 acggctacgccttcttcgccgtcggg 129334
Score = 327 bits (165), Expect = 1e-086
Identities = 261/293 (89%)
Strand = Plus / Minus
Query: 751 ggatggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacgg 810
|||||||||| |||| ||||||| ||||| |||||||||||||||||| |||||| ||
Sbjct: 128771 ggatggggccggggaagtggtcggcggaggagaggaagacgtacaacctgctggacgggg 128712
Query: 811 tgagccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcg 870
||||||||||| || |||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct: 128711 tgagccggcactcggtccaggtgtacccgaggtcgtggacggcgatcatgctgacgttcg 128652
Query: 871 acaacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagc 930
||||||| || ||||||| ||| |||||||| |||||||| || |||||||||| ||||
Sbjct: 128651 acaacgccgggatgtggaacgtgaggtccaacatctgggagaggcactacctcggcgagc 128592
Query: 931 agttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccg 990
|| |||||||||||||| ||||||||||| ||||||| || ||||||||||||||||| |
Sbjct: 128591 agctctacatcagcgtcgtctcgccggcgaggtcgctccgggacgagtacaacatgccgg 128532
Query: 991 acaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| |||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 128531 agaacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 128479
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 745 bits (376), Expect = 0.0
Identities = 654/746 (87%), Gaps = 3/746 (0%)
Strand = Plus / Minus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| ||||| ||||||| |||||||||||||| |||||||| |||||| ||| |
Sbjct: 6128817 cgcccatgttcaccgtcgaggccggcaagacgtaccggctccgcgtctgcaacgtcggca 6128758
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 6128757 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctggtggagatggagg 6128698
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || || |||||||| |||||||||| || ||||| |||||||||||||||||||
Sbjct: 6128697 gctcccacacggtgcaggacatgtacgactccctcgacgtccacgtcggccactgcctct 6128638
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccacgcggt 246
|||| || ||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 6128637 ccgtcctcgtcgacgccgaccagaagcccggcgactactacgcggtggcgtccacgcggt 6128578
Query: 247 tcatccacgacgccaagtccgcctccgccgtcatccgctacgccggctccagcggcgccc 306
|||||||||| |||||||| | || ||||||||||||||||||||||| ||| | |
Sbjct: 6128577 tcatccacgaggccaagtcggtgtcagccgtcatccgctacgccggctcgagca---cgc 6128521
Query: 307 cgccggcgccgaacatgaccgagccaccggccggctgggcctggtccatcaaccaggcca 366
||||| ||||| | || | ||||| ||||| || ||||| ||||| ||||||||| |
Sbjct: 6128520 cgccgtcgccggccgtgccggagccgccggcgggatgggcgtggtcgatcaaccagtgga 6128461
Query: 367 ggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagggctcctacc 426
|||||||||| |||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 6128460 ggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgcaggggtcctacc 6128401
Query: 427 actacggccagatcaacatcacccgcaccatcaaggtcatggtctcccgcggccacatcg 486
|||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||
Sbjct: 6128400 actacggccagatcaacatcacgcgcaccatcaggctcatggtctcccggggccacatcg 6128341
Query: 487 acggcaagctccgctacggcttcaacggcatctcccatagggaccccgagacccccgtga 546
||||||||||| ||||||||||| ||| ||||||| ||| ||||||| || | |
Sbjct: 6128340 acggcaagctcaagtacggcttcaatggcgtctcccacgtcgacgccgagacgccgctca 6128281
Query: 547 agctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgacg 606
||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||
Sbjct: 6128280 agctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccgacg 6128221
Query: 607 tgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagttcc 666
|||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 6128220 tgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagttcc 6128161
Query: 667 gcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgtcg 726
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 6128160 gcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacctcg 6128101
Query: 727 acggctacgccttcttcggcgtcggg 752
|||||||||||||||||| |||||||
Sbjct: 6128100 acggctacgccttcttcgccgtcggg 6128075
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 745 bits (376), Expect = 0.0
Identities = 654/746 (87%), Gaps = 3/746 (0%)
Strand = Plus / Minus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| ||||| ||||||| |||||||||||||| |||||||| |||||| ||| |
Sbjct: 23429130 cgcccatgttcaccgtcgaggccggcaagacgtaccggctccgcgtctgcaacgtcggca 23429071
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 23429070 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctggtggagatggagg 23429011
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || || |||||||| |||||||||| || ||||| |||||||||||||||||||
Sbjct: 23429010 gctcccacacggtgcaggacatgtacgactccctcgacgtccacgtcggccactgcctct 23428951
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccacgcggt 246
|||| || ||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 23428950 ccgtcctcgtcgacgccgaccagaagcccggcgactactacgcggtggcgtccacgcggt 23428891
Query: 247 tcatccacgacgccaagtccgcctccgccgtcatccgctacgccggctccagcggcgccc 306
|||||||||| |||||||| | || ||||||||||||||||||||||| ||| | |
Sbjct: 23428890 tcatccacgaggccaagtcggtgtcagccgtcatccgctacgccggctcgagca---cgc 23428834
Query: 307 cgccggcgccgaacatgaccgagccaccggccggctgggcctggtccatcaaccaggcca 366
||||| ||||| | || | ||||| ||||| || ||||| ||||| ||||||||| |
Sbjct: 23428833 cgccgtcgccggccgtgccggagccgccggcgggatgggcgtggtcgatcaaccagtgga 23428774
Query: 367 ggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagggctcctacc 426
|||||||||| |||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 23428773 ggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgcaggggtcctacc 23428714
Query: 427 actacggccagatcaacatcacccgcaccatcaaggtcatggtctcccgcggccacatcg 486
|||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||
Sbjct: 23428713 actacggccagatcaacatcacgcgcaccatcaggctcatggtctcccggggccacatcg 23428654
Query: 487 acggcaagctccgctacggcttcaacggcatctcccatagggaccccgagacccccgtga 546
||||||||||| ||||||||||| ||| ||||||| ||| ||||||| || | |
Sbjct: 23428653 acggcaagctcaagtacggcttcaatggcgtctcccacgtcgacgccgagacgccgctca 23428594
Query: 547 agctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgacg 606
||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||
Sbjct: 23428593 agctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccgacg 23428534
Query: 607 tgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagttcc 666
|||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 23428533 tgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagttcc 23428474
Query: 667 gcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgtcg 726
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 23428473 gcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacctcg 23428414
Query: 727 acggctacgccttcttcggcgtcggg 752
|||||||||||||||||| |||||||
Sbjct: 23428413 acggctacgccttcttcgccgtcggg 23428388
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 745 bits (376), Expect = 0.0
Identities = 654/746 (87%), Gaps = 3/746 (0%)
Strand = Plus / Minus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| ||||| ||||||| |||||||||||||| |||||||| |||||| ||| |
Sbjct: 23740123 cgcccatgttcaccgtcgaggccggcaagacgtaccggctccgcgtctgcaacgtcggca 23740064
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 23740063 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctggtggagatggagg 23740004
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || || |||||||| |||||||||| || ||||| |||||||||||||||||||
Sbjct: 23740003 gctcccacacggtgcaggacatgtacgactccctcgacgtccacgtcggccactgcctct 23739944
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccacgcggt 246
|||| || ||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 23739943 ccgtcctcgtcgacgccgaccagaagcccggcgactactacgcggtggcgtccacgcggt 23739884
Query: 247 tcatccacgacgccaagtccgcctccgccgtcatccgctacgccggctccagcggcgccc 306
|||||||||| |||||||| | || ||||||||||||||||||||||| ||| | |
Sbjct: 23739883 tcatccacgaggccaagtcggtgtcagccgtcatccgctacgccggctcgagca---cgc 23739827
Query: 307 cgccggcgccgaacatgaccgagccaccggccggctgggcctggtccatcaaccaggcca 366
||||| ||||| | || | ||||| ||||| || ||||| ||||| ||||||||| |
Sbjct: 23739826 cgccgtcgccggccgtgccggagccgccggcgggatgggcgtggtcgatcaaccagtgga 23739767
Query: 367 ggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagggctcctacc 426
|||||||||| |||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 23739766 ggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgcaggggtcctacc 23739707
Query: 427 actacggccagatcaacatcacccgcaccatcaaggtcatggtctcccgcggccacatcg 486
|||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||
Sbjct: 23739706 actacggccagatcaacatcacgcgcaccatcaggctcatggtctcccggggccacatcg 23739647
Query: 487 acggcaagctccgctacggcttcaacggcatctcccatagggaccccgagacccccgtga 546
||||||||||| ||||||||||| ||| ||||||| ||| ||||||| || | |
Sbjct: 23739646 acggcaagctcaagtacggcttcaatggcgtctcccacgtcgacgccgagacgccgctca 23739587
Query: 547 agctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgacg 606
||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||
Sbjct: 23739586 agctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccgacg 23739527
Query: 607 tgccccccgccgtgaacggtcccctccatgtcatccccaatgtcatcaccgccgagttcc 666
|||| |||||||| || || |||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 23739526 tgccgcccgccgtcaatggccccctccacgtcgtccccaacgtcatcaccgccgagttcc 23739467
Query: 667 gcaccttcatcgagatcgtcttcgagaaccccgagaagagcatagactccctccacgtcg 726
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||
Sbjct: 23739466 gcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccacctcg 23739407
Query: 727 acggctacgccttcttcggcgtcggg 752
|||||||||||||||||| |||||||
Sbjct: 23739406 acggctacgccttcttcgccgtcggg 23739381
Score = 327 bits (165), Expect = 1e-086
Identities = 261/293 (89%)
Strand = Plus / Minus
Query: 751 ggatggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacgg 810
|||||||||| |||| ||||||| ||||| |||||||||||||||||| |||||| ||
Sbjct: 23738818 ggatggggccggggaagtggtcggcggaggagaggaagacgtacaacctgctggacgggg 23738759
Query: 811 tgagccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcg 870
||||||||||| || |||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct: 23738758 tgagccggcactcggtccaggtgtacccgaggtcgtggacggcgatcatgctgacgttcg 23738699
Query: 871 acaacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagc 930
||||||| || ||||||| ||| |||||||| |||||||| || |||||||||| ||||
Sbjct: 23738698 acaacgccgggatgtggaacgtgaggtccaacatctgggagaggcactacctcggcgagc 23738639
Query: 931 agttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccg 990
|| |||||||||||||| ||||||||||| ||||||| || ||||||||||||||||| |
Sbjct: 23738638 agctctacatcagcgtcgtctcgccggcgaggtcgctccgggacgagtacaacatgccgg 23738579
Query: 991 acaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| |||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 23738578 agaacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 23738526
>dbj|AK100654.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111E13, full
insert sequence
Length = 2451
Score = 424 bits (214), Expect = e-116
Identities = 355/402 (88%)
Strand = Plus / Plus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1433 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 1492
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcggcgtcgggatggggcct 761
|||||||| |||||| ||||| || |||||||||||||||||| || ||| ||||||||
Sbjct: 1493 aagagcatcgactccttccacatcaacggctacgccttcttcgccgccggcatggggccg 1552
Query: 762 gggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtgagccggcac 821
|||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1553 gggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtgagccggcac 1612
Query: 822 acgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcgacaacgcgggc 881
|||||||||||||||||| |||| ||||||||| | |||||||| ||||||||||||||
Sbjct: 1613 acgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgacaacgcgggg 1672
Query: 882 atgtggagcgtccggtccaacgtctgggagcggtactacctcggggagcagttctacatc 941
||||||| | || |||||||| | |||||| ||||||||||||||| |||||| ||| ||
Sbjct: 1673 atgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcagttgtacgtc 1732
Query: 942 agcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgacaacgccctc 1001
||||| | ||||||||| ||||||| || ||||||||||||||||| || | ||||||
Sbjct: 1733 agcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggagatagccctc 1792
Query: 1002 cgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
||||||||||||||||| || |||||| ||||||| ||||||
Sbjct: 1793 cgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 1834
Score = 167 bits (84), Expect = 2e-038
Identities = 111/120 (92%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 1130 tgggcgtggtccatcaaccagtggaggtcgttccgctggaacctgacggcgagcgcggcg 1189
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatcaag 461
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 1190 cggcccaacccgcaggggtcctaccactacgggcagatcaacatcacgcgcaccatcaag 1249
Score = 117 bits (59), Expect = 2e-023
Identities = 191/235 (81%)
Strand = Plus / Plus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| |||| | ||||| |||||| |||||| ||||||| |||||| ||||
Sbjct: 798 cgcccatgtacaccatggaggccggcaaggtgtaccggttccgcgtctgcaacgtgggga 857
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
||||| ||||||||||| | ||||||||||||||| | | |||||||| ||| ||||||
Sbjct: 858 tcaagacgtcgctcaacgtgcgcatccagggccacagcctcaagctcgtggagatggagg 917
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || ||| ||||| || |||||||||||||||||||| |||| ||| ||| |||
Sbjct: 918 gctcgcacaccgtgcagaacagctacgactcgctggacgtgcatgtcgcccagtgcgtct 977
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccac 241
|| | || ||| |||||||||| ||||||||||||| | | |||||||||||
Sbjct: 978 ccttcctcgtcaccgccgaccagaagcccggcgactacctcctcgtggcctccac 1032
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 1337 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 1396
Query: 606 gtgcc 610
|||||
Sbjct: 1397 gtgcc 1401
>ref|NM_191079.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1662
Score = 424 bits (214), Expect = e-116
Identities = 355/402 (88%)
Strand = Plus / Plus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1249 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 1308
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcggcgtcgggatggggcct 761
|||||||| |||||| ||||| || |||||||||||||||||| || ||| ||||||||
Sbjct: 1309 aagagcatcgactccttccacatcaacggctacgccttcttcgccgccggcatggggccg 1368
Query: 762 gggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtgagccggcac 821
|||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1369 gggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtgagccggcac 1428
Query: 822 acgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcgacaacgcgggc 881
|||||||||||||||||| |||| ||||||||| | |||||||| ||||||||||||||
Sbjct: 1429 acgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgacaacgcgggg 1488
Query: 882 atgtggagcgtccggtccaacgtctgggagcggtactacctcggggagcagttctacatc 941
||||||| | || |||||||| | |||||| ||||||||||||||| |||||| ||| ||
Sbjct: 1489 atgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcagttgtacgtc 1548
Query: 942 agcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgacaacgccctc 1001
||||| | ||||||||| ||||||| || ||||||||||||||||| || | ||||||
Sbjct: 1549 agcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggagatagccctc 1608
Query: 1002 cgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
||||||||||||||||| || |||||| ||||||| ||||||
Sbjct: 1609 cgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 1650
Score = 167 bits (84), Expect = 2e-038
Identities = 111/120 (92%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 946 tgggcgtggtccatcaaccagtggaggtcgttccgctggaacctgacggcgagcgcggcg 1005
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatcaag 461
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 1006 cggcccaacccgcaggggtcctaccactacgggcagatcaacatcacgcgcaccatcaag 1065
Score = 117 bits (59), Expect = 2e-023
Identities = 191/235 (81%)
Strand = Plus / Plus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| |||| | ||||| |||||| |||||| ||||||| |||||| ||||
Sbjct: 614 cgcccatgtacaccatggaggccggcaaggtgtaccggttccgcgtctgcaacgtgggga 673
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
||||| ||||||||||| | ||||||||||||||| | | |||||||| ||| ||||||
Sbjct: 674 tcaagacgtcgctcaacgtgcgcatccagggccacagcctcaagctcgtggagatggagg 733
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || ||| ||||| || |||||||||||||||||||| |||| ||| ||| |||
Sbjct: 734 gctcgcacaccgtgcagaacagctacgactcgctggacgtgcatgtcgcccagtgcgtct 793
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccac 241
|| | || ||| |||||||||| ||||||||||||| | | |||||||||||
Sbjct: 794 ccttcctcgtcaccgccgaccagaagcccggcgactacctcctcgtggcctccac 848
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 1153 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 1212
Query: 606 gtgcc 610
|||||
Sbjct: 1213 gtgcc 1217
>gb|AACV01002567.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002567, whole
genome shotgun sequence
Length = 43694
Score = 283 bits (143), Expect = 1e-073
Identities = 254/291 (87%)
Strand = Plus / Minus
Query: 753 atggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtg 812
|||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 2747 atggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtg 2688
Query: 813 agccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcgac 872
||||||||||||||||||||||||||| |||| ||||||||| | |||||||| ||||||
Sbjct: 2687 agccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgac 2628
Query: 873 aacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagcag 932
|||||||| ||||||| | || |||||||| | |||||| ||||||||||||||| ||||
Sbjct: 2627 aacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcag 2568
Query: 933 ttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgac 992
|| ||| ||||||| | ||||||||| ||||||| || ||||||||||||||||| ||
Sbjct: 2567 ttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggag 2508
Query: 993 aacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| ||||||||||||||||||||||| || |||||| ||||||| ||||||
Sbjct: 2507 atagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 2457
Score = 167 bits (84), Expect = 2e-038
Identities = 111/120 (92%)
Strand = Plus / Minus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 3262 tgggcgtggtccatcaaccagtggaggtcgttccgctggaacctgacggcgagcgcggcg 3203
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatcaag 461
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 3202 cggcccaacccgcaggggtcctaccactacgggcagatcaacatcacgcgcaccatcaag 3143
Score = 149 bits (75), Expect = 5e-033
Identities = 96/103 (93%)
Strand = Plus / Minus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2959 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 2900
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcg 744
|||||||| |||||| ||||| || ||||||||||||||||||
Sbjct: 2899 aagagcatcgactccttccacatcaacggctacgccttcttcg 2857
Score = 117 bits (59), Expect = 2e-023
Identities = 191/235 (81%)
Strand = Plus / Minus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| |||| | ||||| |||||| |||||| ||||||| |||||| ||||
Sbjct: 3594 cgcccatgtacaccatggaggccggcaaggtgtaccggttccgcgtctgcaacgtgggga 3535
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
||||| ||||||||||| | ||||||||||||||| | | |||||||| ||| ||||||
Sbjct: 3534 tcaagacgtcgctcaacgtgcgcatccagggccacagcctcaagctcgtggagatggagg 3475
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || ||| ||||| || |||||||||||||||||||| |||| ||| ||| |||
Sbjct: 3474 gctcgcacaccgtgcagaacagctacgactcgctggacgtgcatgtcgcccagtgcgtct 3415
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccac 241
|| | || ||| |||||||||| ||||||||||||| | | |||||||||||
Sbjct: 3414 ccttcctcgtcaccgccgaccagaagcccggcgactacctcctcgtggcctccac 3360
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 3055 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 2996
Query: 606 gtgcc 610
|||||
Sbjct: 2995 gtgcc 2991
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 283 bits (143), Expect = 1e-073
Identities = 254/291 (87%)
Strand = Plus / Plus
Query: 753 atggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtg 812
|||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 34822536 atggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtg 34822595
Query: 813 agccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcgac 872
||||||||||||||||||||||||||| |||| ||||||||| | |||||||| ||||||
Sbjct: 34822596 agccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgac 34822655
Query: 873 aacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagcag 932
|||||||| ||||||| | || |||||||| | |||||| ||||||||||||||| ||||
Sbjct: 34822656 aacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcag 34822715
Query: 933 ttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgac 992
|| ||| ||||||| | ||||||||| ||||||| || ||||||||||||||||| ||
Sbjct: 34822716 ttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggag 34822775
Query: 993 aacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| ||||||||||||||||||||||| || |||||| ||||||| ||||||
Sbjct: 34822776 atagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 34822826
Score = 167 bits (84), Expect = 2e-038
Identities = 111/120 (92%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 34822021 tgggcgtggtccatcaaccagtggaggtcgttccgctggaacctgacggcgagcgcggcg 34822080
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatcaag 461
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 34822081 cggcccaacccgcaggggtcctaccactacgggcagatcaacatcacgcgcaccatcaag 34822140
Score = 149 bits (75), Expect = 5e-033
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 34822324 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 34822383
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcg 744
|||||||| |||||| ||||| || ||||||||||||||||||
Sbjct: 34822384 aagagcatcgactccttccacatcaacggctacgccttcttcg 34822426
Score = 117 bits (59), Expect = 2e-023
Identities = 191/235 (81%)
Strand = Plus / Plus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| |||| | ||||| |||||| |||||| ||||||| |||||| ||||
Sbjct: 34821689 cgcccatgtacaccatggaggccggcaaggtgtaccggttccgcgtctgcaacgtgggga 34821748
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
||||| ||||||||||| | ||||||||||||||| | | |||||||| ||| ||||||
Sbjct: 34821749 tcaagacgtcgctcaacgtgcgcatccagggccacagcctcaagctcgtggagatggagg 34821808
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || ||| ||||| || |||||||||||||||||||| |||| ||| ||| |||
Sbjct: 34821809 gctcgcacaccgtgcagaacagctacgactcgctggacgtgcatgtcgcccagtgcgtct 34821868
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccac 241
|| | || ||| |||||||||| ||||||||||||| | | |||||||||||
Sbjct: 34821869 ccttcctcgtcaccgccgaccagaagcccggcgactacctcctcgtggcctccac 34821923
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 34822228 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 34822287
Query: 606 gtgcc 610
|||||
Sbjct: 34822288 gtgcc 34822292
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 283 bits (143), Expect = 1e-073
Identities = 254/291 (87%)
Strand = Plus / Plus
Query: 753 atggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtg 812
|||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 9269919 atggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtg 9269978
Query: 813 agccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcgac 872
||||||||||||||||||||||||||| |||| ||||||||| | |||||||| ||||||
Sbjct: 9269979 agccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgac 9270038
Query: 873 aacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagcag 932
|||||||| ||||||| | || |||||||| | |||||| ||||||||||||||| ||||
Sbjct: 9270039 aacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcag 9270098
Query: 933 ttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgac 992
|| ||| ||||||| | ||||||||| ||||||| || ||||||||||||||||| ||
Sbjct: 9270099 ttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggag 9270158
Query: 993 aacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| ||||||||||||||||||||||| || |||||| ||||||| ||||||
Sbjct: 9270159 atagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 9270209
Score = 167 bits (84), Expect = 2e-038
Identities = 111/120 (92%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 9269404 tgggcgtggtccatcaaccagtggaggtcgttccgctggaacctgacggcgagcgcggcg 9269463
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatcaag 461
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 9269464 cggcccaacccgcaggggtcctaccactacgggcagatcaacatcacgcgcaccatcaag 9269523
Score = 149 bits (75), Expect = 5e-033
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9269707 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 9269766
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcg 744
|||||||| |||||| ||||| || ||||||||||||||||||
Sbjct: 9269767 aagagcatcgactccttccacatcaacggctacgccttcttcg 9269809
Score = 117 bits (59), Expect = 2e-023
Identities = 191/235 (81%)
Strand = Plus / Plus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| |||| | ||||| |||||| |||||| ||||||| |||||| ||||
Sbjct: 9269072 cgcccatgtacaccatggaggccggcaaggtgtaccggttccgcgtctgcaacgtgggga 9269131
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
||||| ||||||||||| | ||||||||||||||| | | |||||||| ||| ||||||
Sbjct: 9269132 tcaagacgtcgctcaacgtgcgcatccagggccacagcctcaagctcgtggagatggagg 9269191
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || ||| ||||| || |||||||||||||||||||| |||| ||| ||| |||
Sbjct: 9269192 gctcgcacaccgtgcagaacagctacgactcgctggacgtgcatgtcgcccagtgcgtct 9269251
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccac 241
|| | || ||| |||||||||| ||||||||||||| | | |||||||||||
Sbjct: 9269252 ccttcctcgtcaccgccgaccagaagcccggcgactacctcctcgtggcctccac 9269306
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 9269611 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 9269670
Query: 606 gtgcc 610
|||||
Sbjct: 9269671 gtgcc 9269675
>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0454H12
Length = 161004
Score = 283 bits (143), Expect = 1e-073
Identities = 254/291 (87%)
Strand = Plus / Plus
Query: 753 atggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtg 812
|||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 1038 atggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtg 1097
Query: 813 agccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcgac 872
||||||||||||||||||||||||||| |||| ||||||||| | |||||||| ||||||
Sbjct: 1098 agccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgac 1157
Query: 873 aacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagcag 932
|||||||| ||||||| | || |||||||| | |||||| ||||||||||||||| ||||
Sbjct: 1158 aacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcag 1217
Query: 933 ttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgac 992
|| ||| ||||||| | ||||||||| ||||||| || ||||||||||||||||| ||
Sbjct: 1218 ttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggag 1277
Query: 993 aacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| ||||||||||||||||||||||| || |||||| ||||||| ||||||
Sbjct: 1278 atagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 1328
Score = 167 bits (84), Expect = 2e-038
Identities = 111/120 (92%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 523 tgggcgtggtccatcaaccagtggaggtcgttccgctggaacctgacggcgagcgcggcg 582
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatcaag 461
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 583 cggcccaacccgcaggggtcctaccactacgggcagatcaacatcacgcgcaccatcaag 642
Score = 149 bits (75), Expect = 5e-033
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 826 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 885
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcg 744
|||||||| |||||| ||||| || ||||||||||||||||||
Sbjct: 886 aagagcatcgactccttccacatcaacggctacgccttcttcg 928
Score = 117 bits (59), Expect = 2e-023
Identities = 191/235 (81%)
Strand = Plus / Plus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| |||| | ||||| |||||| |||||| ||||||| |||||| ||||
Sbjct: 191 cgcccatgtacaccatggaggccggcaaggtgtaccggttccgcgtctgcaacgtgggga 250
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
||||| ||||||||||| | ||||||||||||||| | | |||||||| ||| ||||||
Sbjct: 251 tcaagacgtcgctcaacgtgcgcatccagggccacagcctcaagctcgtggagatggagg 310
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || ||| ||||| || |||||||||||||||||||| |||| ||| ||| |||
Sbjct: 311 gctcgcacaccgtgcagaacagctacgactcgctggacgtgcatgtcgcccagtgcgtct 370
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccac 241
|| | || ||| |||||||||| ||||||||||||| | | |||||||||||
Sbjct: 371 ccttcctcgtcaccgccgaccagaagcccggcgactacctcctcgtggcctccac 425
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 730 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 789
Query: 606 gtgcc 610
|||||
Sbjct: 790 gtgcc 794
>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1148D12
Length = 132060
Score = 283 bits (143), Expect = 1e-073
Identities = 254/291 (87%)
Strand = Plus / Plus
Query: 753 atggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtg 812
|||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 57106 atggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtg 57165
Query: 813 agccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcgac 872
||||||||||||||||||||||||||| |||| ||||||||| | |||||||| ||||||
Sbjct: 57166 agccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgac 57225
Query: 873 aacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagcag 932
|||||||| ||||||| | || |||||||| | |||||| ||||||||||||||| ||||
Sbjct: 57226 aacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcag 57285
Query: 933 ttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgac 992
|| ||| ||||||| | ||||||||| ||||||| || ||||||||||||||||| ||
Sbjct: 57286 ttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggag 57345
Query: 993 aacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| ||||||||||||||||||||||| || |||||| ||||||| ||||||
Sbjct: 57346 atagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 57396
Score = 167 bits (84), Expect = 2e-038
Identities = 111/120 (92%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 56591 tgggcgtggtccatcaaccagtggaggtcgttccgctggaacctgacggcgagcgcggcg 56650
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatcaag 461
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 56651 cggcccaacccgcaggggtcctaccactacgggcagatcaacatcacgcgcaccatcaag 56710
Score = 149 bits (75), Expect = 5e-033
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 56894 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 56953
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcg 744
|||||||| |||||| ||||| || ||||||||||||||||||
Sbjct: 56954 aagagcatcgactccttccacatcaacggctacgccttcttcg 56996
Score = 117 bits (59), Expect = 2e-023
Identities = 191/235 (81%)
Strand = Plus / Plus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| |||| | ||||| |||||| |||||| ||||||| |||||| ||||
Sbjct: 56259 cgcccatgtacaccatggaggccggcaaggtgtaccggttccgcgtctgcaacgtgggga 56318
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
||||| ||||||||||| | ||||||||||||||| | | |||||||| ||| ||||||
Sbjct: 56319 tcaagacgtcgctcaacgtgcgcatccagggccacagcctcaagctcgtggagatggagg 56378
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || ||| ||||| || |||||||||||||||||||| |||| ||| ||| |||
Sbjct: 56379 gctcgcacaccgtgcagaacagctacgactcgctggacgtgcatgtcgcccagtgcgtct 56438
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccac 241
|| | || ||| |||||||||| ||||||||||||| | | |||||||||||
Sbjct: 56439 ccttcctcgtcaccgccgaccagaagcccggcgactacctcctcgtggcctccac 56493
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 56798 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 56857
Query: 606 gtgcc 610
|||||
Sbjct: 56858 gtgcc 56862
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 283 bits (143), Expect = 1e-073
Identities = 254/291 (87%)
Strand = Plus / Plus
Query: 753 atggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtg 812
|||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 9090668 atggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtg 9090727
Query: 813 agccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcgac 872
||||||||||||||||||||||||||| |||| ||||||||| | |||||||| ||||||
Sbjct: 9090728 agccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgac 9090787
Query: 873 aacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagcag 932
|||||||| ||||||| | || |||||||| | |||||| ||||||||||||||| ||||
Sbjct: 9090788 aacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcag 9090847
Query: 933 ttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgac 992
|| ||| ||||||| | ||||||||| ||||||| || ||||||||||||||||| ||
Sbjct: 9090848 ttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggag 9090907
Query: 993 aacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| ||||||||||||||||||||||| || |||||| ||||||| ||||||
Sbjct: 9090908 atagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 9090958
Score = 167 bits (84), Expect = 2e-038
Identities = 111/120 (92%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 9090153 tgggcgtggtccatcaaccagtggaggtcgttccgctggaacctgacggcgagcgcggcg 9090212
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatcaag 461
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 9090213 cggcccaacccgcaggggtcctaccactacgggcagatcaacatcacgcgcaccatcaag 9090272
Score = 149 bits (75), Expect = 5e-033
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9090456 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 9090515
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcg 744
|||||||| |||||| ||||| || ||||||||||||||||||
Sbjct: 9090516 aagagcatcgactccttccacatcaacggctacgccttcttcg 9090558
Score = 117 bits (59), Expect = 2e-023
Identities = 191/235 (81%)
Strand = Plus / Plus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| |||| | ||||| |||||| |||||| ||||||| |||||| ||||
Sbjct: 9089821 cgcccatgtacaccatggaggccggcaaggtgtaccggttccgcgtctgcaacgtgggga 9089880
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
||||| ||||||||||| | ||||||||||||||| | | |||||||| ||| ||||||
Sbjct: 9089881 tcaagacgtcgctcaacgtgcgcatccagggccacagcctcaagctcgtggagatggagg 9089940
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || ||| ||||| || |||||||||||||||||||| |||| ||| ||| |||
Sbjct: 9089941 gctcgcacaccgtgcagaacagctacgactcgctggacgtgcatgtcgcccagtgcgtct 9090000
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccac 241
|| | || ||| |||||||||| ||||||||||||| | | |||||||||||
Sbjct: 9090001 ccttcctcgtcaccgccgaccagaagcccggcgactacctcctcgtggcctccac 9090055
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 9090360 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 9090419
Query: 606 gtgcc 610
|||||
Sbjct: 9090420 gtgcc 9090424
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 283 bits (143), Expect = 1e-073
Identities = 254/291 (87%)
Strand = Plus / Plus
Query: 753 atggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtg 812
|||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 34292389 atggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtg 34292448
Query: 813 agccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcgac 872
||||||||||||||||||||||||||| |||| ||||||||| | |||||||| ||||||
Sbjct: 34292449 agccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgac 34292508
Query: 873 aacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagcag 932
|||||||| ||||||| | || |||||||| | |||||| ||||||||||||||| ||||
Sbjct: 34292509 aacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcag 34292568
Query: 933 ttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgac 992
|| ||| ||||||| | ||||||||| ||||||| || ||||||||||||||||| ||
Sbjct: 34292569 ttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggag 34292628
Query: 993 aacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| ||||||||||||||||||||||| || |||||| ||||||| ||||||
Sbjct: 34292629 atagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 34292679
Score = 167 bits (84), Expect = 2e-038
Identities = 111/120 (92%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 34291874 tgggcgtggtccatcaaccagtggaggtcgttccgctggaacctgacggcgagcgcggcg 34291933
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatcaag 461
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 34291934 cggcccaacccgcaggggtcctaccactacgggcagatcaacatcacgcgcaccatcaag 34291993
Score = 149 bits (75), Expect = 5e-033
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 34292177 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 34292236
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcg 744
|||||||| |||||| ||||| || ||||||||||||||||||
Sbjct: 34292237 aagagcatcgactccttccacatcaacggctacgccttcttcg 34292279
Score = 117 bits (59), Expect = 2e-023
Identities = 191/235 (81%)
Strand = Plus / Plus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| |||| | ||||| |||||| |||||| ||||||| |||||| ||||
Sbjct: 34291542 cgcccatgtacaccatggaggccggcaaggtgtaccggttccgcgtctgcaacgtgggga 34291601
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
||||| ||||||||||| | ||||||||||||||| | | |||||||| ||| ||||||
Sbjct: 34291602 tcaagacgtcgctcaacgtgcgcatccagggccacagcctcaagctcgtggagatggagg 34291661
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || ||| ||||| || |||||||||||||||||||| |||| ||| ||| |||
Sbjct: 34291662 gctcgcacaccgtgcagaacagctacgactcgctggacgtgcatgtcgcccagtgcgtct 34291721
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccac 241
|| | || ||| |||||||||| ||||||||||||| | | |||||||||||
Sbjct: 34291722 ccttcctcgtcaccgccgaccagaagcccggcgactacctcctcgtggcctccac 34291776
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 34292081 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 34292140
Query: 606 gtgcc 610
|||||
Sbjct: 34292141 gtgcc 34292145
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 283 bits (143), Expect = 1e-073
Identities = 254/291 (87%)
Strand = Plus / Plus
Query: 753 atggggcctgggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtg 812
|||||||| |||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 34741866 atggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacggtg 34741925
Query: 813 agccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcgac 872
||||||||||||||||||||||||||| |||| ||||||||| | |||||||| ||||||
Sbjct: 34741926 agccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgac 34741985
Query: 873 aacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcggggagcag 932
|||||||| ||||||| | || |||||||| | |||||| ||||||||||||||| ||||
Sbjct: 34741986 aacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgcag 34742045
Query: 933 ttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcccgac 992
|| ||| ||||||| | ||||||||| ||||||| || ||||||||||||||||| ||
Sbjct: 34742046 ttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccggag 34742105
Query: 993 aacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
| ||||||||||||||||||||||| || |||||| ||||||| ||||||
Sbjct: 34742106 atagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctac 34742156
Score = 167 bits (84), Expect = 2e-038
Identities = 111/120 (92%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 34741351 tgggcgtggtccatcaaccagtggaggtcgttccgctggaacctgacggcgagcgcggcg 34741410
Query: 402 cggcccaacccgcagggctcctaccactacggccagatcaacatcacccgcaccatcaag 461
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 34741411 cggcccaacccgcaggggtcctaccactacgggcagatcaacatcacgcgcaccatcaag 34741470
Score = 149 bits (75), Expect = 5e-033
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 34741654 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 34741713
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcg 744
|||||||| |||||| ||||| || ||||||||||||||||||
Sbjct: 34741714 aagagcatcgactccttccacatcaacggctacgccttcttcg 34741756
Score = 117 bits (59), Expect = 2e-023
Identities = 191/235 (81%)
Strand = Plus / Plus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| |||| | ||||| |||||| |||||| ||||||| |||||| ||||
Sbjct: 34741019 cgcccatgtacaccatggaggccggcaaggtgtaccggttccgcgtctgcaacgtgggga 34741078
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagg 126
||||| ||||||||||| | ||||||||||||||| | | |||||||| ||| ||||||
Sbjct: 34741079 tcaagacgtcgctcaacgtgcgcatccagggccacagcctcaagctcgtggagatggagg 34741138
Query: 127 gctcacataccctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctct 186
|||| || ||| ||||| || |||||||||||||||||||| |||| ||| ||| |||
Sbjct: 34741139 gctcgcacaccgtgcagaacagctacgactcgctggacgtgcatgtcgcccagtgcgtct 34741198
Query: 187 ccgtgctggtcgacgccgaccaggcgcccggcgactactacatggtggcctccac 241
|| | || ||| |||||||||| ||||||||||||| | | |||||||||||
Sbjct: 34741199 ccttcctcgtcaccgccgaccagaagcccggcgactacctcctcgtggcctccac 34741253
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 34741558 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 34741617
Query: 606 gtgcc 610
|||||
Sbjct: 34741618 gtgcc 34741622
>gb|C73196.1|C73196 C73196 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3359_1A, mRNA sequence
Length = 418
Score = 276 bits (139), Expect = 3e-071
Identities = 213/239 (89%)
Strand = Plus / Plus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| || ||| |||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 125 cccaacgtnatctccgccgagttccgcaccttcatcgaggtcgtnttcgagaaccccgag 184
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcggcgtcgggatggggcct 761
|||||||| |||||| ||||| || |||||||||||||||||| || ||| ||||||||
Sbjct: 185 aagagcatcgactccttccacatcaacggctacgccttcttcgccgccggnatggggccg 244
Query: 762 gggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtgagccggcac 821
|||| ||| |||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct: 245 gggatatggacgccggagttcaggaagacgtacaacctgctggacacggtgagccggcac 304
Query: 822 acgatccaggtgtacccgcggtcatggacggcgatcatgctgacattcgacaacgcggg 880
||||| |||||||||||| |||| ||||||||| | ||||| || ||||||||||||||
Sbjct: 305 acgattcaggtgtacccgaggtcgtggacggcggtgatgctnacgttcgacaacgcggg 363
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 29 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 88
Query: 606 gtgcc 610
|||||
Sbjct: 89 gtgcc 93
>gb|AU101215.1|AU101215 AU101215 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2633, mRNA sequence
Length = 434
Score = 264 bits (133), Expect = 1e-067
Identities = 209/235 (88%)
Strand = Plus / Plus
Query: 809 ggtgagccggcacacgatccaggtgtacccgcggtcatggacggcgatcatgctgacatt 868
||||||||||||| || |||||||||||||| |||| |||||||||||||||||||| ||
Sbjct: 7 ggtgagccggcactcggtccaggtgtacccgaggtcgtggacggcgatcatgctgacgtt 66
Query: 869 cgacaacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcgggga 928
||||||||| || ||||||| ||| |||||||| |||||||| || ||||||| || ||
Sbjct: 67 cgacaacgccgggatgtggaacgtgaggtccaacatctgggagaggcactacctnggcga 126
Query: 929 gcagttctacatcagcgtcatctcgccggcgcggtcgctgcgcgacgagtacaacatgcc 988
|||| |||||||||||||| ||||||||||| ||||||| || |||||||||||||| ||
Sbjct: 127 gcagctctacatcagcgtcgtctcgccggcgaggtcgctccgggacgagtacaacatncc 186
Query: 989 cgacaacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
|| |||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 187 ggagaacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 241
>gb|C72996.1|C72996 C72996 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2633_1A, mRNA sequence
Length = 464
Score = 236 bits (119), Expect = 3e-059
Identities = 188/211 (89%)
Strand = Plus / Plus
Query: 78 ctcaacttccgcatccagggccacgacatgaagctcgtcgagctggagggctcacatacc 137
||||||||||||||||||||||||||||||||||| || ||| |||||||||| || ||
Sbjct: 1 ctcaacttccgcatccagggccacgacatgaagctggtggagatggagggctcccacacg 60
Query: 138 ctgcaggacgtgtacgactcgctggacgtgcacgtcggccactgcctctccgtgctggtc 197
|||||||| |||||||||| || ||||| ||||||||||||||||||||||| || |||
Sbjct: 61 gtgcaggacatgtacgactccctcgacgtccacgtcggccactgcctctccgtcctcgtc 120
Query: 198 gacgccgaccaggcgcccggcgactactacatggtggcctccacgcggttcatccacgac 257
|||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 121 gacgccgaccagaagcccggcgactactacgcggtggcgtccacgcggttcatccacgag 180
Query: 258 gccaagtccgcctccgccgtcatccgctacg 288
|||||||| | || ||||||||||||||||
Sbjct: 181 gccaagtcggtgtcagccgtcatccgctacg 211
Score = 135 bits (68), Expect = 8e-029
Identities = 140/159 (88%), Gaps = 4/159 (2%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||| ||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 262 tgggcgtggtcgatcaaccagtggaggtcgttccggtggaacctgacggcgagcgccgcc 321
Query: 402 cggcccaacccgcagggctcc-taccac-tacggccaga-tcaacatcacccgcaccatc 458
|| |||||||||||| | ||| |||||| |||||||||| |||||||||| |||||||||
Sbjct: 322 cgccccaacccgcagngttccttaccacttacggccagattcaacatcacgcgcaccatc 381
Query: 459 aaggtcatggtctcccgcggccaca-tcgacggcaagct 496
| | ||||||||||||| ||||||| |||||||||||||
Sbjct: 382 aggctcatggtctcccggggccacattcgacggcaagct 420
>gb|C71978.1|C71978 C71978 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0725_1A, mRNA sequence
Length = 356
Score = 202 bits (102), Expect = 4e-049
Identities = 155/173 (89%)
Strand = Plus / Plus
Query: 642 cccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccgag 701
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 184 cccaacgtcatctccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 243
Query: 702 aagagcatagactccctccacgtcgacggctacgccttcttcggcgtcgggatggggcct 761
|||||||| |||||| ||||| || |||||||||||||||||| || ||| ||||||||
Sbjct: 244 aagagcatcgactccttccacatcaacggctacgccttcttcgccgccggcatggggccg 303
Query: 762 gggacgtggtcgccggagatgaggaagacgtacaacctactggacacggtgag 814
|||| ||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 304 gggatatggacgccggagtncaggaagacgtacaacctgctggacacggtgag 356
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 546 aagctcgccgagtacttcaacgccaccgacggggtgttcagctacaaccagatgggcgac 605
|||||||||||||||||||||||| || |||||||||| ||||||| || ||||||
Sbjct: 88 aagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcgac 147
Query: 606 gtgcc 610
|||||
Sbjct: 148 gtgcc 152
>gb|C72986.1|C72986 C72986 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2605_1A, mRNA sequence
Length = 460
Score = 121 bits (61), Expect = 1e-024
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 7 cgcccatgctcaccttcgaggcgggcaagacgtaccgcctccgcgtgtgcaacaccggga 66
|||||||| ||||| ||||||| |||||||||||||| |||||||| |||||| ||| |
Sbjct: 361 cgcccatgttcaccgtcgaggccggcaagacgtaccggctccgcgtctgcaacgtcggca 420
Query: 67 tcaaggcgtcgctcaacttccgcatccagggccacgacatg 107
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 421 tcaaggcgtcgctcaa-ttccgcatccagggccacgacatg 460
>gb|AU093980.1|AU093980 AU093980 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1615, mRNA sequence
Length = 383
Score = 103 bits (52), Expect = 3e-019
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 972 gacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtggggctgccgctg 1031
||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||
Sbjct: 5 gacgagtacaacatgccggagaacgccctccgctgcggcaaggtcgtcggcctgccgctg 64
Query: 1032 ccgccatcctac 1043
||||| ||||||
Sbjct: 65 ccgccgtcctac 76
>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0022B05
Length = 151317
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 348 tggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggccc 407
||||| || |||||||| ||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct: 53165 tggtcgatgaaccaggcgaggtcgttccggtggaacctgacggcgagcgcggcgaggccc 53224
Query: 408 aacccgcagggctcctaccactacggc 434
||||||||||| || | ||||||||||
Sbjct: 53225 aacccgcaggggtcgttccactacggc 53251
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 358 accaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagg 417
||||||| | ||||||||| |||||||||||||| ||||| ||| |||||||||||||||
Sbjct: 60787 accaggcgatgtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcagg 60846
Query: 418 gctcctaccactacggc 434
| || | ||||||||||
Sbjct: 60847 ggtcgttccactacggc 60863
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 139 tgcaggacgtgtacgactcgctggacgtgcacgtcggcca 178
||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 52950 tgcagaacgtgtacgactcgctcgacgtccatgtcggcca 52989
>dbj|AK102922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114C13, full
insert sequence
Length = 1967
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 348 tggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggccc 407
||||| || |||||||| ||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct: 986 tggtcgatgaaccaggcgaggtcgttccggtggaacctgacggcgagcgcggcgaggccc 1045
Query: 408 aacccgcagggctcctaccactacggc 434
||||||||||| || | ||||||||||
Sbjct: 1046 aacccgcaggggtcgttccactacggc 1072
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 139 tgcaggacgtgtacgactcgctggacgtgcacgtcggcca 178
||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 771 tgcagaacgtgtacgactcgctcgacgtccatgtcggcca 810
>gb|AACV01015064.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015064, whole
genome shotgun sequence
Length = 187699
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 348 tggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggccc 407
||||| || |||||||| ||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct: 122716 tggtcgatgaaccaggcgaggtcgttccggtggaacctgacggcgagcgcggcgaggccc 122775
Query: 408 aacccgcagggctcctaccactacggc 434
||||||||||| || | ||||||||||
Sbjct: 122776 aacccgcaggggtcgttccactacggc 122802
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 358 accaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagg 417
||||||| | ||||||||| |||||||||||||| ||||| ||| |||||||||||||||
Sbjct: 130338 accaggcgatgtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcagg 130397
Query: 418 gctcctaccactacggc 434
| || | ||||||||||
Sbjct: 130398 ggtcgttccactacggc 130414
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 139 tgcaggacgtgtacgactcgctggacgtgcacgtcggcca 178
||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 122501 tgcagaacgtgtacgactcgctcgacgtccatgtcggcca 122540
>ref|XM_476421.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1968
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 348 tggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggccc 407
||||| || |||||||| ||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct: 986 tggtcgatgaaccaggcgaggtcgttccggtggaacctgacggcgagcgcggcgaggccc 1045
Query: 408 aacccgcagggctcctaccactacggc 434
||||||||||| || | ||||||||||
Sbjct: 1046 aacccgcaggggtcgttccactacggc 1072
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 139 tgcaggacgtgtacgactcgctggacgtgcacgtcggcca 178
||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 771 tgcagaacgtgtacgactcgctcgacgtccatgtcggcca 810
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 348 tggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggccc 407
||||| || |||||||| ||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct: 1049514 tggtcgatgaaccaggcgaggtcgttccggtggaacctgacggcgagcgcggcgaggccc 1049573
Query: 408 aacccgcagggctcctaccactacggc 434
||||||||||| || | ||||||||||
Sbjct: 1049574 aacccgcaggggtcgttccactacggc 1049600
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 358 accaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagg 417
||||||| | ||||||||| |||||||||||||| ||||| ||| |||||||||||||||
Sbjct: 1057136 accaggcgatgtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcagg 1057195
Query: 418 gctcctaccactacggc 434
| || | ||||||||||
Sbjct: 1057196 ggtcgttccactacggc 1057212
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 139 tgcaggacgtgtacgactcgctggacgtgcacgtcggcca 178
||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 1049299 tgcagaacgtgtacgactcgctcgacgtccatgtcggcca 1049338
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055 genomic
scaffold, whole genome shotgun sequence
Length = 1431804
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 348 tggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggccc 407
||||| || |||||||| ||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct: 1098306 tggtcgatgaaccaggcgaggtcgttccggtggaacctgacggcgagcgcggcgaggccc 1098365
Query: 408 aacccgcagggctcctaccactacggc 434
||||||||||| || | ||||||||||
Sbjct: 1098366 aacccgcaggggtcgttccactacggc 1098392
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 358 accaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagg 417
||||||| | ||||||||| |||||||||||||| ||||| ||| |||||||||||||||
Sbjct: 1105928 accaggcgatgtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcagg 1105987
Query: 418 gctcctaccactacggc 434
| || | ||||||||||
Sbjct: 1105988 ggtcgttccactacggc 1106004
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 139 tgcaggacgtgtacgactcgctggacgtgcacgtcggcca 178
||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 1098091 tgcagaacgtgtacgactcgctcgacgtccatgtcggcca 1098130
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 348 tggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggccc 407
||||| || |||||||| ||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct: 1098306 tggtcgatgaaccaggcgaggtcgttccggtggaacctgacggcgagcgcggcgaggccc 1098365
Query: 408 aacccgcagggctcctaccactacggc 434
||||||||||| || | ||||||||||
Sbjct: 1098366 aacccgcaggggtcgttccactacggc 1098392
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 358 accaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagg 417
||||||| | ||||||||| |||||||||||||| ||||| ||| |||||||||||||||
Sbjct: 1105928 accaggcgatgtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcagg 1105987
Query: 418 gctcctaccactacggc 434
| || | ||||||||||
Sbjct: 1105988 ggtcgttccactacggc 1106004
Score = 48.1 bits (24), Expect = 0.014
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 676 tcgagatcgtcttcgagaaccccgagaa 703
|||||||||| |||||||||||||||||
Sbjct: 18395848 tcgagatcgtgttcgagaaccccgagaa 18395875
Score = 48.1 bits (24), Expect = 0.014
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 378 tggaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacgg 433
|||||| ||||||| |||| ||||||| ||||||||||| || |||||||||||
Sbjct: 18395550 tggaacttgacggcgagcgggccgcggccgaacccgcaggggtcgtaccactacgg 18395605
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 139 tgcaggacgtgtacgactcgctggacgtgcacgtcggcca 178
||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 1098091 tgcagaacgtgtacgactcgctcgacgtccatgtcggcca 1098130
Score = 46.1 bits (23), Expect = 0.054
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 865 cattcgacaacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcg 924
|||| ||||||| ||||||||||| ||||||||| | ||||| | || | |||||||
Sbjct: 18397002 cattggacaacgtgggcatgtggaacgtccggtcggagaactgggcgaggcagtacctcg 18397061
Query: 925 gggagcagttctacatcagcgtc 947
|| ||||||||||| || |||||
Sbjct: 18397062 ggcagcagttctacctccgcgtc 18397084
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 93.7 bits (47), Expect = 3e-016
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 348 tggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggccc 407
||||| || |||||||| ||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct: 1055577 tggtcgatgaaccaggcgaggtcgttccggtggaacctgacggcgagcgcggcgaggccc 1055636
Query: 408 aacccgcagggctcctaccactacggc 434
||||||||||| || | ||||||||||
Sbjct: 1055637 aacccgcaggggtcgttccactacggc 1055663
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 358 accaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagg 417
||||||| | ||||||||| |||||||||||||| ||||| ||| |||||||||||||||
Sbjct: 1063199 accaggcgatgtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcagg 1063258
Query: 418 gctcctaccactacggc 434
| || | ||||||||||
Sbjct: 1063259 ggtcgttccactacggc 1063275
Score = 48.1 bits (24), Expect = 0.014
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 676 tcgagatcgtcttcgagaaccccgagaa 703
|||||||||| |||||||||||||||||
Sbjct: 19443625 tcgagatcgtgttcgagaaccccgagaa 19443652
Score = 48.1 bits (24), Expect = 0.014
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 378 tggaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacgg 433
|||||| ||||||| |||| ||||||| ||||||||||| || |||||||||||
Sbjct: 19443327 tggaacttgacggcgagcgggccgcggccgaacccgcaggggtcgtaccactacgg 19443382
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 139 tgcaggacgtgtacgactcgctggacgtgcacgtcggcca 178
||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 1055362 tgcagaacgtgtacgactcgctcgacgtccatgtcggcca 1055401
Score = 46.1 bits (23), Expect = 0.054
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 865 cattcgacaacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcg 924
|||| ||||||| ||||||||||| ||||||||| | ||||| | || | |||||||
Sbjct: 19444779 cattggacaacgtgggcatgtggaacgtccggtcggagaactgggcgaggcagtacctcg 19444838
Query: 925 gggagcagttctacatcagcgtc 947
|| ||||||||||| || |||||
Sbjct: 19444839 ggcagcagttctacctccgcgtc 19444861
>gb|C72449.1|C72449 C72449 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1638_1A, mRNA sequence
Length = 330
Score = 85.7 bits (43), Expect = 6e-014
Identities = 80/92 (86%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 342 tgggcctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcg 401
||||| ||||||||||||||| ||||||||||| |||||| ||||||| ||||| |||
Sbjct: 234 tgggcgtggtccatcaaccagtggaggtcgttccgntggaacttgacggcgagcgcggcg 293
Query: 402 cggcccaacccgcagggctcctaccactacgg 433
||||||||||| |||| |||||||| |||||
Sbjct: 294 nggcccaacccg-agggttcctaccantacgg 324
Score = 61.9 bits (31), Expect = 9e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 150 tacgactcgctggacgtgcacgtcggccactgcctctccgtgctggtcgacgccgaccag 209
|||||||||||||||||||| |||| ||| ||| ||||| | || ||| ||||||||||
Sbjct: 45 tacgactcgctggacgtgcatgtcgcccagtgcgtctccttcctcgtcaccgccgaccag 104
Query: 210 gcgcccggcgactac 224
|||||||||||||
Sbjct: 105 aagcccggcgactac 119
>gb|AU312207.1|AU312207 AU312207 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1911, mRNA sequence
Length = 212
Score = 77.8 bits (39), Expect = 2e-011
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 993 aacgccctccgctgcggcaaggtcgtggggctgccgctgccgccatcctac 1043
|||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 6 aacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctac 56
>ref|NM_194185.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 255
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 368 gtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagggctcctacca 427
||||||||| |||||||||||||| ||||| ||| |||||||||||||||| || | |||
Sbjct: 3 gtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttcca 62
Query: 428 ctacggc 434
|||||||
Sbjct: 63 ctacggc 69
>gb|C71990.1|C71990 C71990 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0745_1A, mRNA sequence
Length = 257
Score = 71.9 bits (36), Expect = 9e-010
Identities = 81/96 (84%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 366 aggtcgttccgctggaacctgacggccagcgccgcgcggcccaacccgcagggctcctac 425
|||||||||||||||||||| ||||| ||||| ||| |||| ||||||| | ||||
Sbjct: 68 aggtcgttccgctggaacctnacggcgagcgcggcggntgccaanccgcaggt-tnctac 126
Query: 426 cactacggccagatcaacatcacccgcaccatcaag 461
|||||||| |||||||||||||| | |||||||||
Sbjct: 127 cactacgggcagatcaacatcacgtgtaccatcaag 162
>gb|AU101073.1|AU101073 AU101073 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0725, mRNA sequence
Length = 674
Score = 60.0 bits (30), Expect = 4e-006
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 961 ggtcgctgcgcgacgagtacaacatgcccgacaacgccctccgctgcggcaaggtcgtgg 1020
||||||| || ||||||||||||||||| || | ||| |||| |||||||||||||| |
Sbjct: 3 ggtcgctccgggacgagtacaacatgccggagatagccttccgttgcggcaaggtcgtcg 62
Query: 1021 ggctgccgctgccgccatcctacgcccc 1048
||||| ||||||| |||||| ||||
Sbjct: 63 ncntgccgatgccgccgtcctactcccc 90
>dbj|AK070790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067H20, full
insert sequence
Length = 2016
Score = 56.0 bits (28), Expect = 6e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 380 gaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggccagat 439
|||||||||||| |||| | ||||| |||||||||||||| |||||||||||| |||
Sbjct: 1071 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 1130
Query: 440 caac 443
||||
Sbjct: 1131 caac 1134
>dbj|AK071517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100A14, full
insert sequence
Length = 1977
Score = 56.0 bits (28), Expect = 6e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 380 gaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggccagat 439
|||||||||||| |||| | ||||| |||||||||||||| |||||||||||| |||
Sbjct: 1078 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 1137
Query: 440 caac 443
||||
Sbjct: 1138 caac 1141
>gb|AACV01010279.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010279, whole
genome shotgun sequence
Length = 16074
Score = 56.0 bits (28), Expect = 6e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 380 gaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggccagat 439
|||||||||||| |||| | ||||| |||||||||||||| |||||||||||| |||
Sbjct: 12714 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 12655
Query: 440 caac 443
||||
Sbjct: 12654 caac 12651
>ref|XM_473496.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1665
Score = 56.0 bits (28), Expect = 6e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 380 gaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggccagat 439
|||||||||||| |||| | ||||| |||||||||||||| |||||||||||| |||
Sbjct: 987 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 1046
Query: 440 caac 443
||||
Sbjct: 1047 caac 1050
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 56.0 bits (28), Expect = 6e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 380 gaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggccagat 439
|||||||||||| |||| | ||||| |||||||||||||| |||||||||||| |||
Sbjct: 1878082 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 1878023
Query: 440 caac 443
||||
Sbjct: 1878022 caac 1878019
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 56.0 bits (28), Expect = 6e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 380 gaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggccagat 439
|||||||||||| |||| | ||||| |||||||||||||| |||||||||||| |||
Sbjct: 5904740 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 5904681
Query: 440 caac 443
||||
Sbjct: 5904680 caac 5904677
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 56.0 bits (28), Expect = 6e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 380 gaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggccagat 439
|||||||||||| |||| | ||||| |||||||||||||| |||||||||||| |||
Sbjct: 25048839 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 25048780
Query: 440 caac 443
||||
Sbjct: 25048779 caac 25048776
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
complete sequence
Length = 147806
Score = 56.0 bits (28), Expect = 6e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 380 gaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggccagat 439
|||||||||||| |||| | ||||| |||||||||||||| |||||||||||| |||
Sbjct: 108656 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 108597
Query: 440 caac 443
||||
Sbjct: 108596 caac 108593
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 56.0 bits (28), Expect = 6e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 380 gaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacggccagat 439
|||||||||||| |||| | ||||| |||||||||||||| |||||||||||| |||
Sbjct: 28101431 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 28101372
Query: 440 caac 443
||||
Sbjct: 28101371 caac 28101368
>ref|XM_478354.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1692
Score = 54.0 bits (27), Expect = 2e-004
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 347 ctggtccatcaaccaggccaggtcgttccgctggaacctgacggccagcgccgcgcggcc 406
||||||| ||||||||||| | || || | |||||| ||||||| |||| |||||||
Sbjct: 996 ctggtccctcaaccaggcccgctccatcaggtggaacttgacggcgagcgggccgcggcc 1055
Query: 407 caacccgcagggctcctaccactacgg 433
||||||||||| || |||||||||||
Sbjct: 1056 gaacccgcaggggtcgtaccactacgg 1082
Score = 48.1 bits (24), Expect = 0.014
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 676 tcgagatcgtcttcgagaaccccgagaa 703
|||||||||| |||||||||||||||||
Sbjct: 1325 tcgagatcgtgttcgagaaccccgagaa 1352
Score = 46.1 bits (23), Expect = 0.054
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 865 cattcgacaacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcg 924
|||| ||||||| ||||||||||| ||||||||| | ||||| | || | |||||||
Sbjct: 1514 cattggacaacgtgggcatgtggaacgtccggtcggagaactgggcgaggcagtacctcg 1573
Query: 925 gggagcagttctacatcagcgtc 947
|| ||||||||||| || |||||
Sbjct: 1574 ggcagcagttctacctccgcgtc 1596
>gb|AU181257.1|AU181257 AU181257 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C11117, mRNA sequence
Length = 434
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 139 tgcaggacgtgtacgactcgctggacgtgcacgtcggcca 178
||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 204 tgcagaacgtgtacgactcgctcgacgtccatgtcggcca 243
>gb|AY224490.1| Oryza sativa (japonica cultivar-group) isolate 30845 putative
L-ascorbate oxidase-like protein mRNA, partial cds
Length = 194
Score = 48.1 bits (24), Expect = 0.014
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 139 tgcaggacgtgtacgactcgctggacgtgcacgtcggcca 178
||||| |||||||||||||||| ||||| || ||||||||
Sbjct: 119 tgcagaacgtgtacgactcgctcgacgtccatgtcggcca 158
>gb|AACV01016348.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016348, whole
genome shotgun sequence
Length = 5078
Score = 48.1 bits (24), Expect = 0.014
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 378 tggaacctgacggccagcgccgcgcggcccaacccgcagggctcctaccactacgg 433
|||||| ||||||| |||| ||||||| ||||||||||| || |||||||||||
Sbjct: 1867 tggaacttgacggcgagcgggccgcggccgaacccgcaggggtcgtaccactacgg 1812
Score = 48.1 bits (24), Expect = 0.014
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 676 tcgagatcgtcttcgagaaccccgagaa 703
|||||||||| |||||||||||||||||
Sbjct: 1569 tcgagatcgtgttcgagaaccccgagaa 1542
Score = 46.1 bits (23), Expect = 0.054
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 865 cattcgacaacgcgggcatgtggagcgtccggtccaacgtctgggagcggtactacctcg 924
|||| ||||||| ||||||||||| ||||||||| | ||||| | || | |||||||
Sbjct: 415 cattggacaacgtgggcatgtggaacgtccggtcggagaactgggcgaggcagtacctcg 356
Query: 925 gggagcagttctacatcagcgtc 947
|| ||||||||||| || |||||
Sbjct: 355 ggcagcagttctacctccgcgtc 333
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,195,926
Number of Sequences: 438736
Number of extensions: 2195926
Number of successful extensions: 17009
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16190
Number of HSP's gapped (non-prelim): 807
length of query: 1469
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1448
effective length of database: 2,791,206,460
effective search space: 4041666954080
effective search space used: 4041666954080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)