BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.2
(1172 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK101009.1| Oryza sativa (japonica cultivar-group) cDNA... 498 e-138
ref|XM_464629.1| Oryza sativa (japonica cultivar-group), mRNA 498 e-138
dbj|AP004780.1| Oryza sativa (japonica cultivar-group) chro... 301 4e-079
dbj|AP004039.3| Oryza sativa (japonica cultivar-group) geno... 301 4e-079
gb|AACV01003607.1| Oryza sativa (japonica cultivar-group) c... 301 4e-079
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 301 4e-079
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 301 4e-079
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 301 4e-079
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 301 4e-079
dbj|AK072583.1| Oryza sativa (japonica cultivar-group) cDNA... 280 2e-072
dbj|AP005708.1| Oryza sativa (japonica cultivar-group) chro... 222 3e-055
ref|NT_107232.1| Oryza sativa (japonica cultivar-group) 222 3e-055
gb|AACV01014423.1| Oryza sativa (japonica cultivar-group) c... 222 3e-055
dbj|AP003724.2| Oryza sativa (japonica cultivar-group) geno... 222 3e-055
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 222 3e-055
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 222 3e-055
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 222 3e-055
dbj|AK070509.1| Oryza sativa (japonica cultivar-group) cDNA... 178 4e-042
gb|AACV01013018.1| Oryza sativa (japonica cultivar-group) c... 174 7e-041
dbj|AP003487.2| Oryza sativa (japonica cultivar-group) geno... 174 7e-041
dbj|AP003767.3| Oryza sativa (japonica cultivar-group) geno... 174 7e-041
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 174 7e-041
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 174 7e-041
dbj|AK100191.1| Oryza sativa (japonica cultivar-group) cDNA... 167 2e-038
gb|AACV01013020.1| Oryza sativa (japonica cultivar-group) c... 143 2e-031
gb|CZ444110.1|CZ444110 UCDRdSpm486_3.1 UCD RdSpm Rice Inser... 111 9e-022
gb|CV733041.1|CV733041 FLO--07-M13.b1 Rice flower lambda ph... 109 3e-021
gb|AACV01014424.1| Oryza sativa (japonica cultivar-group) c... 100 3e-018
gb|C73240.1|C73240 C73240 Rice panicle at flowering stage O... 92 8e-016
gb|AQ862064.1|AQ862064 nbeb0018O13f CUGI Rice BAC Library (... 74 2e-010
gb|AQ865437.1|AQ865437 nbeb0025I06f CUGI Rice BAC Library (... 72 8e-010
gb|AZ135244.1|AZ135244 OSJNBb0115A18r CUGI Rice BAC Library... 66 5e-008
gb|AACV01008547.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
ref|XM_471234.1| Oryza sativa (japonica cultivar-group), p... 66 5e-008
ref|NT_107194.1| Oryza sativa (japonica cultivar-group) 66 5e-008
gb|CH401184.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromoso... 66 5e-008
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A0... 58 1e-005
gb|AC025905.3| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|AACV01021719.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|NM_196827.1| Oryza sativa (japonica cultivar-group) put... 58 1e-005
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 58 1e-005
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|AU070353.1|AU070353 AU070353 Rice green shoot Oryza sati... 52 7e-004
dbj|AK060609.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.043
dbj|AK066636.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.043
gb|AACV01001496.1| Oryza sativa (japonica cultivar-group) c... 46 0.043
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.043
ref|NM_193350.1| Oryza sativa (japonica cultivar-group), p... 46 0.043
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 46 0.043
dbj|AP004231.3| Oryza sativa (japonica cultivar-group) geno... 46 0.043
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.043
dbj|AP005541.3| Oryza sativa (japonica cultivar-group) geno... 44 0.17
gb|AACV01017899.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
ref|XM_481288.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.17
dbj|AP004696.3| Oryza sativa (japonica cultivar-group) geno... 44 0.17
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.17
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.17
>dbj|AK101009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148H12, full
insert sequence
Length = 1825
Score = 498 bits (251), Expect = e-138
Identities = 555/653 (84%), Gaps = 5/653 (0%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgc---caacggcgccgg 107
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 719 cagcgacaagaccatcgacggccgcggcgcgcaggtgcacatcgcgcgcggcggcgccgg 778
Query: 108 gatcacggtgcagctggcgcaaaacgtcatcatccacaacctgcacgtgcacgacgtcaa 167
|||||| || ||| | || | ||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 779 gatcaccgtccagttcgcccgcaacgtgatcatcaccagcctccacgtccacgacgtgaa 838
Query: 168 gcacaccatgggcggcctcatgcgcgactcccccacgcacatcggctcccgcaccagggc 227
||||| | |||||| | |||||||| || |||||||||||| ||||||| ||||
Sbjct: 839 gcacagcgacggcggcgcggtccgcgactcgccgacgcacatcggcccccgcacgcgggc 898
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
|||||||||||||||||| |||||| |||||||| |||| ||| | |||||| |||||||
Sbjct: 899 cgacggcgacggcatctcgctcttcgccgccaccgacgtgtgggtggaccacgtctccat 958
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
||||| ||||||||||| |||||||||||||||||| |||| |||||| | ||||||||
Sbjct: 959 gtccatgtgcgaggacgggctcatcgacgtcgtgcagggctcgacgggggtgaccatctc 1018
Query: 348 caactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggcc 407
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct: 1019 caacagccacttcaccaaccacaacgacgtcatgctgttcggcgccagcgactcgtaccc 1078
Query: 408 gcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgca 467
|||||| || | |||||||||||||| || ||||||||||||||| | || || |||||
Sbjct: 1079 gcaggataaggtgatgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgca 1138
Query: 468 gcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgcactg 527
||||||||| | ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 1139 gcggatgccgcgatgccggtgggggttcttccacgtcgtcaacaacgactacacgcactg 1198
Query: 528 gctcatgtacgccattggcggcggcgacgcg-ccaaccatcatcagccagggcaaccgct 586
||||||||||||||| ||||||||| | | | || |||||| |||||||||||||||| |
Sbjct: 1199 gctcatgtacgccatcggcggcggc-atgagccctaccatcctcagccagggcaaccgat 1257
Query: 587 acatagcaccaccaaacatcgccgccaaagtgatcaccaagcactacgcggaagaaggcg 646
|||| || || || ||||||||||||||| ||||||| | |||||| ||| || | |
Sbjct: 1258 acatcgcccctcccaacatcgccgccaaactgatcacgaggcactatgcgccggagtggg 1317
Query: 647 tgtggaagaactgggtgtggcacacggaggacgacctgttcatgaacggcgcc 699
|||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct: 1318 agtggaagaactgggcgtggcgctcggacggagacctgttcatgaacggcgcc 1370
>ref|XM_464629.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1825
Score = 498 bits (251), Expect = e-138
Identities = 555/653 (84%), Gaps = 5/653 (0%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgc---caacggcgccgg 107
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 719 cagcgacaagaccatcgacggccgcggcgcgcaggtgcacatcgcgcgcggcggcgccgg 778
Query: 108 gatcacggtgcagctggcgcaaaacgtcatcatccacaacctgcacgtgcacgacgtcaa 167
|||||| || ||| | || | ||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 779 gatcaccgtccagttcgcccgcaacgtgatcatcaccagcctccacgtccacgacgtgaa 838
Query: 168 gcacaccatgggcggcctcatgcgcgactcccccacgcacatcggctcccgcaccagggc 227
||||| | |||||| | |||||||| || |||||||||||| ||||||| ||||
Sbjct: 839 gcacagcgacggcggcgcggtccgcgactcgccgacgcacatcggcccccgcacgcgggc 898
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
|||||||||||||||||| |||||| |||||||| |||| ||| | |||||| |||||||
Sbjct: 899 cgacggcgacggcatctcgctcttcgccgccaccgacgtgtgggtggaccacgtctccat 958
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
||||| ||||||||||| |||||||||||||||||| |||| |||||| | ||||||||
Sbjct: 959 gtccatgtgcgaggacgggctcatcgacgtcgtgcagggctcgacgggggtgaccatctc 1018
Query: 348 caactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggcc 407
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct: 1019 caacagccacttcaccaaccacaacgacgtcatgctgttcggcgccagcgactcgtaccc 1078
Query: 408 gcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgca 467
|||||| || | |||||||||||||| || ||||||||||||||| | || || |||||
Sbjct: 1079 gcaggataaggtgatgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgca 1138
Query: 468 gcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgcactg 527
||||||||| | ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 1139 gcggatgccgcgatgccggtgggggttcttccacgtcgtcaacaacgactacacgcactg 1198
Query: 528 gctcatgtacgccattggcggcggcgacgcg-ccaaccatcatcagccagggcaaccgct 586
||||||||||||||| ||||||||| | | | || |||||| |||||||||||||||| |
Sbjct: 1199 gctcatgtacgccatcggcggcggc-atgagccctaccatcctcagccagggcaaccgat 1257
Query: 587 acatagcaccaccaaacatcgccgccaaagtgatcaccaagcactacgcggaagaaggcg 646
|||| || || || ||||||||||||||| ||||||| | |||||| ||| || | |
Sbjct: 1258 acatcgcccctcccaacatcgccgccaaactgatcacgaggcactatgcgccggagtggg 1317
Query: 647 tgtggaagaactgggtgtggcacacggaggacgacctgttcatgaacggcgcc 699
|||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct: 1318 agtggaagaactgggcgtggcgctcggacggagacctgttcatgaacggcgcc 1370
>dbj|AP004780.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0542A02, ***
SEQUENCING IN PROGRESS ***
Length = 137445
Score = 301 bits (152), Expect = 4e-079
Identities = 304/354 (85%), Gaps = 3/354 (0%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgc---caacggcgccgg 107
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 126086 cagcgacaagaccatcgacggccgcggcgcgcaggtgcacatcgcgcgcggcggcgccgg 126145
Query: 108 gatcacggtgcagctggcgcaaaacgtcatcatccacaacctgcacgtgcacgacgtcaa 167
|||||| || ||| | || | ||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 126146 gatcaccgtccagttcgcccgcaacgtgatcatcaccagcctccacgtccacgacgtgaa 126205
Query: 168 gcacaccatgggcggcctcatgcgcgactcccccacgcacatcggctcccgcaccagggc 227
||||| | |||||| | |||||||| || |||||||||||| ||||||| ||||
Sbjct: 126206 gcacagcgacggcggcgcggtccgcgactcgccgacgcacatcggcccccgcacgcgggc 126265
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
|||||||||||||||||| |||||| |||||||| |||| ||| | |||||| |||||||
Sbjct: 126266 cgacggcgacggcatctcgctcttcgccgccaccgacgtgtgggtggaccacgtctccat 126325
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
||||| ||||||||||| |||||||||||||||||| |||| |||||| | ||||||||
Sbjct: 126326 gtccatgtgcgaggacgggctcatcgacgtcgtgcagggctcgacgggggtgaccatctc 126385
Query: 348 caactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 126386 caacagccacttcaccaaccacaacgacgtcatgctgttcggcgccagcgactc 126439
Score = 182 bits (92), Expect = 3e-043
Identities = 172/196 (87%), Gaps = 2/196 (1%)
Strand = Plus / Plus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||||||||||| || ||||||||||||||| | || || |||||||||||||| |
Sbjct: 126640 atgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgccgcga 126699
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 126700 tgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgcc 126759
Query: 541 attggcggcggcgacgcg-ccaaccatcatcagccagggcaaccgctacatagcaccacc 599
|| ||||||||| | | | || |||||| |||||||||||||||| ||||| || || ||
Sbjct: 126760 atcggcggcggc-atgagccctaccatcctcagccagggcaaccgatacatcgcccctcc 126818
Query: 600 aaacatcgccgccaaa 615
|||||||||||||||
Sbjct: 126819 caacatcgccgccaaa 126834
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatgaacggcgcc 699
|||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct: 127289 gtggaagaactgggcgtggcgctcggacggagacctgttcatgaacggcgcc 127340
>dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1006_D05
Length = 128178
Score = 301 bits (152), Expect = 4e-079
Identities = 304/354 (85%), Gaps = 3/354 (0%)
Strand = Plus / Minus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgc---caacggcgccgg 107
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 42214 cagcgacaagaccatcgacggccgcggcgcgcaggtgcacatcgcgcgcggcggcgccgg 42155
Query: 108 gatcacggtgcagctggcgcaaaacgtcatcatccacaacctgcacgtgcacgacgtcaa 167
|||||| || ||| | || | ||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 42154 gatcaccgtccagttcgcccgcaacgtgatcatcaccagcctccacgtccacgacgtgaa 42095
Query: 168 gcacaccatgggcggcctcatgcgcgactcccccacgcacatcggctcccgcaccagggc 227
||||| | |||||| | |||||||| || |||||||||||| ||||||| ||||
Sbjct: 42094 gcacagcgacggcggcgcggtccgcgactcgccgacgcacatcggcccccgcacgcgggc 42035
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
|||||||||||||||||| |||||| |||||||| |||| ||| | |||||| |||||||
Sbjct: 42034 cgacggcgacggcatctcgctcttcgccgccaccgacgtgtgggtggaccacgtctccat 41975
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
||||| ||||||||||| |||||||||||||||||| |||| |||||| | ||||||||
Sbjct: 41974 gtccatgtgcgaggacgggctcatcgacgtcgtgcagggctcgacgggggtgaccatctc 41915
Query: 348 caactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 41914 caacagccacttcaccaaccacaacgacgtcatgctgttcggcgccagcgactc 41861
Score = 182 bits (92), Expect = 3e-043
Identities = 172/196 (87%), Gaps = 2/196 (1%)
Strand = Plus / Minus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||||||||||| || ||||||||||||||| | || || |||||||||||||| |
Sbjct: 41660 atgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgccgcga 41601
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 41600 tgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgcc 41541
Query: 541 attggcggcggcgacgcg-ccaaccatcatcagccagggcaaccgctacatagcaccacc 599
|| ||||||||| | | | || |||||| |||||||||||||||| ||||| || || ||
Sbjct: 41540 atcggcggcggc-atgagccctaccatcctcagccagggcaaccgatacatcgcccctcc 41482
Query: 600 aaacatcgccgccaaa 615
|||||||||||||||
Sbjct: 41481 caacatcgccgccaaa 41466
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatgaacggcgcc 699
|||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct: 41011 gtggaagaactgggcgtggcgctcggacggagacctgttcatgaacggcgcc 40960
>gb|AACV01003607.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003607, whole
genome shotgun sequence
Length = 8977
Score = 301 bits (152), Expect = 4e-079
Identities = 304/354 (85%), Gaps = 3/354 (0%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgc---caacggcgccgg 107
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 7171 cagcgacaagaccatcgacggccgcggcgcgcaggtgcacatcgcgcgcggcggcgccgg 7230
Query: 108 gatcacggtgcagctggcgcaaaacgtcatcatccacaacctgcacgtgcacgacgtcaa 167
|||||| || ||| | || | ||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 7231 gatcaccgtccagttcgcccgcaacgtgatcatcaccagcctccacgtccacgacgtgaa 7290
Query: 168 gcacaccatgggcggcctcatgcgcgactcccccacgcacatcggctcccgcaccagggc 227
||||| | |||||| | |||||||| || |||||||||||| ||||||| ||||
Sbjct: 7291 gcacagcgacggcggcgcggtccgcgactcgccgacgcacatcggcccccgcacgcgggc 7350
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
|||||||||||||||||| |||||| |||||||| |||| ||| | |||||| |||||||
Sbjct: 7351 cgacggcgacggcatctcgctcttcgccgccaccgacgtgtgggtggaccacgtctccat 7410
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
||||| ||||||||||| |||||||||||||||||| |||| |||||| | ||||||||
Sbjct: 7411 gtccatgtgcgaggacgggctcatcgacgtcgtgcagggctcgacgggggtgaccatctc 7470
Query: 348 caactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7471 caacagccacttcaccaaccacaacgacgtcatgctgttcggcgccagcgactc 7524
Score = 182 bits (92), Expect = 3e-043
Identities = 172/196 (87%), Gaps = 2/196 (1%)
Strand = Plus / Plus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||||||||||| || ||||||||||||||| | || || |||||||||||||| |
Sbjct: 7725 atgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgccgcga 7784
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7785 tgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgcc 7844
Query: 541 attggcggcggcgacgcg-ccaaccatcatcagccagggcaaccgctacatagcaccacc 599
|| ||||||||| | | | || |||||| |||||||||||||||| ||||| || || ||
Sbjct: 7845 atcggcggcggc-atgagccctaccatcctcagccagggcaaccgatacatcgcccctcc 7903
Query: 600 aaacatcgccgccaaa 615
|||||||||||||||
Sbjct: 7904 caacatcgccgccaaa 7919
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatgaacggcgcc 699
|||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct: 8374 gtggaagaactgggcgtggcgctcggacggagacctgttcatgaacggcgcc 8425
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 301 bits (152), Expect = 4e-079
Identities = 304/354 (85%), Gaps = 3/354 (0%)
Strand = Plus / Minus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgc---caacggcgccgg 107
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 430603 cagcgacaagaccatcgacggccgcggcgcgcaggtgcacatcgcgcgcggcggcgccgg 430544
Query: 108 gatcacggtgcagctggcgcaaaacgtcatcatccacaacctgcacgtgcacgacgtcaa 167
|||||| || ||| | || | ||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 430543 gatcaccgtccagttcgcccgcaacgtgatcatcaccagcctccacgtccacgacgtgaa 430484
Query: 168 gcacaccatgggcggcctcatgcgcgactcccccacgcacatcggctcccgcaccagggc 227
||||| | |||||| | |||||||| || |||||||||||| ||||||| ||||
Sbjct: 430483 gcacagcgacggcggcgcggtccgcgactcgccgacgcacatcggcccccgcacgcgggc 430424
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
|||||||||||||||||| |||||| |||||||| |||| ||| | |||||| |||||||
Sbjct: 430423 cgacggcgacggcatctcgctcttcgccgccaccgacgtgtgggtggaccacgtctccat 430364
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
||||| ||||||||||| |||||||||||||||||| |||| |||||| | ||||||||
Sbjct: 430363 gtccatgtgcgaggacgggctcatcgacgtcgtgcagggctcgacgggggtgaccatctc 430304
Query: 348 caactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 430303 caacagccacttcaccaaccacaacgacgtcatgctgttcggcgccagcgactc 430250
Score = 182 bits (92), Expect = 3e-043
Identities = 172/196 (87%), Gaps = 2/196 (1%)
Strand = Plus / Minus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||||||||||| || ||||||||||||||| | || || |||||||||||||| |
Sbjct: 430049 atgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgccgcga 429990
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 429989 tgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgcc 429930
Query: 541 attggcggcggcgacgcg-ccaaccatcatcagccagggcaaccgctacatagcaccacc 599
|| ||||||||| | | | || |||||| |||||||||||||||| ||||| || || ||
Sbjct: 429929 atcggcggcggc-atgagccctaccatcctcagccagggcaaccgatacatcgcccctcc 429871
Query: 600 aaacatcgccgccaaa 615
|||||||||||||||
Sbjct: 429870 caacatcgccgccaaa 429855
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatgaacggcgcc 699
|||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct: 429400 gtggaagaactgggcgtggcgctcggacggagacctgttcatgaacggcgcc 429349
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 301 bits (152), Expect = 4e-079
Identities = 304/354 (85%), Gaps = 3/354 (0%)
Strand = Plus / Minus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgc---caacggcgccgg 107
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 6518279 cagcgacaagaccatcgacggccgcggcgcgcaggtgcacatcgcgcgcggcggcgccgg 6518220
Query: 108 gatcacggtgcagctggcgcaaaacgtcatcatccacaacctgcacgtgcacgacgtcaa 167
|||||| || ||| | || | ||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 6518219 gatcaccgtccagttcgcccgcaacgtgatcatcaccagcctccacgtccacgacgtgaa 6518160
Query: 168 gcacaccatgggcggcctcatgcgcgactcccccacgcacatcggctcccgcaccagggc 227
||||| | |||||| | |||||||| || |||||||||||| ||||||| ||||
Sbjct: 6518159 gcacagcgacggcggcgcggtccgcgactcgccgacgcacatcggcccccgcacgcgggc 6518100
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
|||||||||||||||||| |||||| |||||||| |||| ||| | |||||| |||||||
Sbjct: 6518099 cgacggcgacggcatctcgctcttcgccgccaccgacgtgtgggtggaccacgtctccat 6518040
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
||||| ||||||||||| |||||||||||||||||| |||| |||||| | ||||||||
Sbjct: 6518039 gtccatgtgcgaggacgggctcatcgacgtcgtgcagggctcgacgggggtgaccatctc 6517980
Query: 348 caactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6517979 caacagccacttcaccaaccacaacgacgtcatgctgttcggcgccagcgactc 6517926
Score = 182 bits (92), Expect = 3e-043
Identities = 172/196 (87%), Gaps = 2/196 (1%)
Strand = Plus / Minus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||||||||||| || ||||||||||||||| | || || |||||||||||||| |
Sbjct: 6517725 atgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgccgcga 6517666
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6517665 tgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgcc 6517606
Query: 541 attggcggcggcgacgcg-ccaaccatcatcagccagggcaaccgctacatagcaccacc 599
|| ||||||||| | | | || |||||| |||||||||||||||| ||||| || || ||
Sbjct: 6517605 atcggcggcggc-atgagccctaccatcctcagccagggcaaccgatacatcgcccctcc 6517547
Query: 600 aaacatcgccgccaaa 615
|||||||||||||||
Sbjct: 6517546 caacatcgccgccaaa 6517531
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatgaacggcgcc 699
|||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct: 6517076 gtggaagaactgggcgtggcgctcggacggagacctgttcatgaacggcgcc 6517025
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 301 bits (152), Expect = 4e-079
Identities = 304/354 (85%), Gaps = 3/354 (0%)
Strand = Plus / Minus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgc---caacggcgccgg 107
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 6518279 cagcgacaagaccatcgacggccgcggcgcgcaggtgcacatcgcgcgcggcggcgccgg 6518220
Query: 108 gatcacggtgcagctggcgcaaaacgtcatcatccacaacctgcacgtgcacgacgtcaa 167
|||||| || ||| | || | ||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 6518219 gatcaccgtccagttcgcccgcaacgtgatcatcaccagcctccacgtccacgacgtgaa 6518160
Query: 168 gcacaccatgggcggcctcatgcgcgactcccccacgcacatcggctcccgcaccagggc 227
||||| | |||||| | |||||||| || |||||||||||| ||||||| ||||
Sbjct: 6518159 gcacagcgacggcggcgcggtccgcgactcgccgacgcacatcggcccccgcacgcgggc 6518100
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
|||||||||||||||||| |||||| |||||||| |||| ||| | |||||| |||||||
Sbjct: 6518099 cgacggcgacggcatctcgctcttcgccgccaccgacgtgtgggtggaccacgtctccat 6518040
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
||||| ||||||||||| |||||||||||||||||| |||| |||||| | ||||||||
Sbjct: 6518039 gtccatgtgcgaggacgggctcatcgacgtcgtgcagggctcgacgggggtgaccatctc 6517980
Query: 348 caactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6517979 caacagccacttcaccaaccacaacgacgtcatgctgttcggcgccagcgactc 6517926
Score = 182 bits (92), Expect = 3e-043
Identities = 172/196 (87%), Gaps = 2/196 (1%)
Strand = Plus / Minus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||||||||||| || ||||||||||||||| | || || |||||||||||||| |
Sbjct: 6517725 atgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgccgcga 6517666
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6517665 tgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgcc 6517606
Query: 541 attggcggcggcgacgcg-ccaaccatcatcagccagggcaaccgctacatagcaccacc 599
|| ||||||||| | | | || |||||| |||||||||||||||| ||||| || || ||
Sbjct: 6517605 atcggcggcggc-atgagccctaccatcctcagccagggcaaccgatacatcgcccctcc 6517547
Query: 600 aaacatcgccgccaaa 615
|||||||||||||||
Sbjct: 6517546 caacatcgccgccaaa 6517531
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatgaacggcgcc 699
|||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct: 6517076 gtggaagaactgggcgtggcgctcggacggagacctgttcatgaacggcgcc 6517025
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 301 bits (152), Expect = 4e-079
Identities = 304/354 (85%), Gaps = 3/354 (0%)
Strand = Plus / Minus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgc---caacggcgccgg 107
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 6400221 cagcgacaagaccatcgacggccgcggcgcgcaggtgcacatcgcgcgcggcggcgccgg 6400162
Query: 108 gatcacggtgcagctggcgcaaaacgtcatcatccacaacctgcacgtgcacgacgtcaa 167
|||||| || ||| | || | ||||| |||||| || ||| ||||| |||||||| ||
Sbjct: 6400161 gatcaccgtccagttcgcccgcaacgtgatcatcaccagcctccacgtccacgacgtgaa 6400102
Query: 168 gcacaccatgggcggcctcatgcgcgactcccccacgcacatcggctcccgcaccagggc 227
||||| | |||||| | |||||||| || |||||||||||| ||||||| ||||
Sbjct: 6400101 gcacagcgacggcggcgcggtccgcgactcgccgacgcacatcggcccccgcacgcgggc 6400042
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
|||||||||||||||||| |||||| |||||||| |||| ||| | |||||| |||||||
Sbjct: 6400041 cgacggcgacggcatctcgctcttcgccgccaccgacgtgtgggtggaccacgtctccat 6399982
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
||||| ||||||||||| |||||||||||||||||| |||| |||||| | ||||||||
Sbjct: 6399981 gtccatgtgcgaggacgggctcatcgacgtcgtgcagggctcgacgggggtgaccatctc 6399922
Query: 348 caactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6399921 caacagccacttcaccaaccacaacgacgtcatgctgttcggcgccagcgactc 6399868
Score = 182 bits (92), Expect = 3e-043
Identities = 172/196 (87%), Gaps = 2/196 (1%)
Strand = Plus / Minus
Query: 421 atgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgcagcggatgccaagg 480
|||||||||||||| || ||||||||||||||| | || || |||||||||||||| |
Sbjct: 6399667 atgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgccgcga 6399608
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6399607 tgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgcc 6399548
Query: 541 attggcggcggcgacgcg-ccaaccatcatcagccagggcaaccgctacatagcaccacc 599
|| ||||||||| | | | || |||||| |||||||||||||||| ||||| || || ||
Sbjct: 6399547 atcggcggcggc-atgagccctaccatcctcagccagggcaaccgatacatcgcccctcc 6399489
Query: 600 aaacatcgccgccaaa 615
|||||||||||||||
Sbjct: 6399488 caacatcgccgccaaa 6399473
Score = 56.0 bits (28), Expect = 4e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatgaacggcgcc 699
|||||||||||||| ||||| | |||| | |||||||||||||||||||||
Sbjct: 6399018 gtggaagaactgggcgtggcgctcggacggagacctgttcatgaacggcgcc 6398967
>dbj|AK072583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132G06, full
insert sequence
Length = 2078
Score = 280 bits (141), Expect = 2e-072
Identities = 295/341 (86%), Gaps = 4/341 (1%)
Strand = Plus / Plus
Query: 204 gcacatcggctcccgcaccagggccgacggcgacggcatctccctcttctccgccaccaa 263
|||| |||||| ||||||| | ||||||||||||||||| | ||||| | |||||||
Sbjct: 907 gcacttcggcttccgcacccagtccgacggcgacggcatcagcatcttcggctccaccaa 966
Query: 264 cgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcgt-gc 322
||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| | ||
Sbjct: 967 cgtctggctcgaccacctctccctctccaactgccaggacggcctcatcgacgtcatcgc 1026
Query: 323 agagctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtcatgc 382
|| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1027 caag-tccaccggagtcaccatctccaactgccacctcaccaaccacaacgacgtcatgc 1085
Query: 383 tcttcggcgccagcgactcctggccgc-aggaccagatcatgcagatcaccgtcgccttc 441
|||||||| |||||||||||| | || |||||||||||||||||||||||||||| |||
Sbjct: 1086 tcttcggctccagcgactcctt-cagcgaggaccagatcatgcagatcaccgtcgctttc 1144
Query: 442 aaccacttcggcaggggcctggtgcagcggatgccaaggtgccgctggggcttcttccac 501
|||||||||||| | ||||| || || | ||||| || ||||| ||||| || ||||||
Sbjct: 1145 aaccacttcggccgcggcctcgtccaaagaatgcccagatgccgatggggatttttccac 1204
Query: 502 gttgtcaacaacgactacacgcactggctcatgtacgccat 542
|| || ||||||||||||||||||||||||||||| |||||
Sbjct: 1205 gtggtgaacaacgactacacgcactggctcatgtatgccat 1245
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 690
|||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 1354 gtggaagaactgggtgtggcactctgaggaggacctgttcatg 1396
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttc 795
||||||||||||| ||| ||||||| || |||||||||||||||
Sbjct: 1461 tcaagcccaagcccggatcctacgtcacgaggctcacccgcttc 1504
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgc 88
|||||||||||| ||||||||||| || ||||||||||
Sbjct: 754 cagcgacaagacgatcgacgggcggggagcgcaggtgc 791
>dbj|AP005708.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0507H07, ***
SEQUENCING IN PROGRESS ***
Length = 101786
Score = 222 bits (112), Expect = 3e-055
Identities = 221/252 (87%), Gaps = 4/252 (1%)
Strand = Plus / Minus
Query: 204 gcacatcggctcccgcaccagggccgacggcgacggcatctccctcttctccgccaccaa 263
|||| |||||| ||||||| | ||||||||||||||||| | ||||| | |||||||
Sbjct: 35736 gcacttcggcttccgcacccagtccgacggcgacggcatcagcatcttcggctccaccaa 35677
Query: 264 cgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcgt-gc 322
||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| | ||
Sbjct: 35676 cgtctggctcgaccacctctccctctccaactgccaggacggcctcatcgacgtcatcgc 35617
Query: 323 agagctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtcatgc 382
|| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 35616 caag-tccaccggagtcaccatctccaactgccacctcaccaaccacaacgacgtcatgc 35558
Query: 383 tcttcggcgccagcgactcctggccgc-aggaccagatcatgcagatcaccgtcgccttc 441
|||||||| |||||||||||| | || |||||||||||||||||||||||||||| |||
Sbjct: 35557 tcttcggctccagcgactcct-tcagcgaggaccagatcatgcagatcaccgtcgctttc 35499
Query: 442 aaccacttcggc 453
||||||||||||
Sbjct: 35498 aaccacttcggc 35487
Score = 99.6 bits (50), Expect = 3e-018
Identities = 94/106 (88%), Gaps = 2/106 (1%)
Strand = Plus / Minus
Query: 342 catctccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
||||||||||| |||| ||||||||||||||||| ||| ||||||| || |||| |||||
Sbjct: 32171 catctccaactaccacctcaccaaccacaacgacatcaggctcttcagctccagtgactc 32112
Query: 402 ctggccgc-aggaccagatcatgcagatcaccgtcgccttcaacca 446
|| | || |||||||||||||||||||||| ||||||||||||||
Sbjct: 32111 ct-tcagcgaggaccagatcatgcagatcactgtcgccttcaacca 32067
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| ||||| || |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 35346 tgccgatggggatttttccacgtggtgaacaacgactacacgcactggctcatgtatgcc 35287
Query: 541 at 542
||
Sbjct: 35286 at 35285
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 257 ccaccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacg 316
|||||||||||| | |||||||| ||||| | ||||||||| ||||||||||||||||||
Sbjct: 32260 ccaccaacgtctagctcgaccacctctccctctccaactgcaaggacggcctcatcgacg 32201
Query: 317 tc 318
||
Sbjct: 32200 tc 32199
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 690
|||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 35176 gtggaagaactgggtgtggcactctgaggaggacctgttcatg 35134
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 496 ttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
|||||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct: 31916 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccat 31870
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttc 795
||||||||||||| ||| ||||||| || |||||||||||||||
Sbjct: 35069 tcaagcccaagcccggatcctacgtcacgaggctcacccgcttc 35026
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgc 88
|||||||||||| ||||||||||| || ||||||||||
Sbjct: 35889 cagcgacaagacgatcgacgggcggggagcgcaggtgc 35852
Score = 44.1 bits (22), Expect = 0.17
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttctccggc 801
||||||||||||| ||| ||||||| | |||||||| |||||| |||||
Sbjct: 31650 tcaagcccaagcctggatcctacgtcgcgaggctcacgcgcttcgccggc 31601
>ref|NT_107232.1| Oryza sativa (japonica cultivar-group)
Length = 367211
Score = 222 bits (112), Expect = 3e-055
Identities = 221/252 (87%), Gaps = 4/252 (1%)
Strand = Plus / Plus
Query: 204 gcacatcggctcccgcaccagggccgacggcgacggcatctccctcttctccgccaccaa 263
|||| |||||| ||||||| | ||||||||||||||||| | ||||| | |||||||
Sbjct: 332234 gcacttcggcttccgcacccagtccgacggcgacggcatcagcatcttcggctccaccaa 332293
Query: 264 cgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcgt-gc 322
||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| | ||
Sbjct: 332294 cgtctggctcgaccacctctccctctccaactgccaggacggcctcatcgacgtcatcgc 332353
Query: 323 agagctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtcatgc 382
|| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 332354 caag-tccaccggagtcaccatctccaactgccacctcaccaaccacaacgacgtcatgc 332412
Query: 383 tcttcggcgccagcgactcctggccgc-aggaccagatcatgcagatcaccgtcgccttc 441
|||||||| |||||||||||| | || |||||||||||||||||||||||||||| |||
Sbjct: 332413 tcttcggctccagcgactcct-tcagcgaggaccagatcatgcagatcaccgtcgctttc 332471
Query: 442 aaccacttcggc 453
||||||||||||
Sbjct: 332472 aaccacttcggc 332483
Score = 99.6 bits (50), Expect = 3e-018
Identities = 94/106 (88%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 342 catctccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
||||||||||| |||| ||||||||||||||||| ||| ||||||| || |||| |||||
Sbjct: 335799 catctccaactaccacctcaccaaccacaacgacatcaggctcttcagctccagtgactc 335858
Query: 402 ctggccgc-aggaccagatcatgcagatcaccgtcgccttcaacca 446
|| | || |||||||||||||||||||||| ||||||||||||||
Sbjct: 335859 ct-tcagcgaggaccagatcatgcagatcactgtcgccttcaacca 335903
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 257 ccaccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacg 316
|||||||||||| | |||||||| ||||| | ||||||||| ||||||||||||||||||
Sbjct: 335710 ccaccaacgtctagctcgaccacctctccctctccaactgcaaggacggcctcatcgacg 335769
Query: 317 tc 318
||
Sbjct: 335770 tc 335771
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| ||||| || |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 332624 tgccgatggggatttttccacgtggtgaacaacgactacacgcactggctcatgtatgcc 332683
Query: 541 at 542
||
Sbjct: 332684 at 332685
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 496 ttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
|||||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct: 336054 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccat 336100
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 690
|||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 332794 gtggaagaactgggtgtggcactctgaggaggacctgttcatg 332836
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttc 795
||||||||||||| ||| ||||||| || |||||||||||||||
Sbjct: 332901 tcaagcccaagcccggatcctacgtcacgaggctcacccgcttc 332944
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgc 88
|||||||||||| ||||||||||| || ||||||||||
Sbjct: 332081 cagcgacaagacgatcgacgggcggggagcgcaggtgc 332118
Score = 44.1 bits (22), Expect = 0.17
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttctccggc 801
||||||||||||| ||| ||||||| | |||||||| |||||| |||||
Sbjct: 336320 tcaagcccaagcctggatcctacgtcgcgaggctcacgcgcttcgccggc 336369
>gb|AACV01014423.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014423,
whole genome shotgun sequence
Length = 8187
Score = 222 bits (112), Expect = 3e-055
Identities = 221/252 (87%), Gaps = 4/252 (1%)
Strand = Plus / Minus
Query: 204 gcacatcggctcccgcaccagggccgacggcgacggcatctccctcttctccgccaccaa 263
|||| |||||| ||||||| | ||||||||||||||||| | ||||| | |||||||
Sbjct: 295 gcacttcggcttccgcacccagtccgacggcgacggcatcagcatcttcggctccaccaa 236
Query: 264 cgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcgt-gc 322
||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| | ||
Sbjct: 235 cgtctggctcgaccacctctccctctccaactgccaggacggcctcatcgacgtcatcgc 176
Query: 323 agagctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtcatgc 382
|| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 175 caag-tccaccggagtcaccatctccaactgccacctcaccaaccacaacgacgtcatgc 117
Query: 383 tcttcggcgccagcgactcctggccgc-aggaccagatcatgcagatcaccgtcgccttc 441
|||||||| |||||||||||| | || |||||||||||||||||||||||||||| |||
Sbjct: 116 tcttcggctccagcgactcct-tcagcgaggaccagatcatgcagatcaccgtcgctttc 58
Query: 442 aaccacttcggc 453
||||||||||||
Sbjct: 57 aaccacttcggc 46
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgc 88
|||||||||||| ||||||||||| || ||||||||||
Sbjct: 448 cagcgacaagacgatcgacgggcggggagcgcaggtgc 411
>dbj|AP003724.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0498C03
Length = 146394
Score = 222 bits (112), Expect = 3e-055
Identities = 221/252 (87%), Gaps = 4/252 (1%)
Strand = Plus / Plus
Query: 204 gcacatcggctcccgcaccagggccgacggcgacggcatctccctcttctccgccaccaa 263
|||| |||||| ||||||| | ||||||||||||||||| | ||||| | |||||||
Sbjct: 111417 gcacttcggcttccgcacccagtccgacggcgacggcatcagcatcttcggctccaccaa 111476
Query: 264 cgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcgt-gc 322
||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| | ||
Sbjct: 111477 cgtctggctcgaccacctctccctctccaactgccaggacggcctcatcgacgtcatcgc 111536
Query: 323 agagctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtcatgc 382
|| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 111537 caag-tccaccggagtcaccatctccaactgccacctcaccaaccacaacgacgtcatgc 111595
Query: 383 tcttcggcgccagcgactcctggccgc-aggaccagatcatgcagatcaccgtcgccttc 441
|||||||| |||||||||||| | || |||||||||||||||||||||||||||| |||
Sbjct: 111596 tcttcggctccagcgactcct-tcagcgaggaccagatcatgcagatcaccgtcgctttc 111654
Query: 442 aaccacttcggc 453
||||||||||||
Sbjct: 111655 aaccacttcggc 111666
Score = 99.6 bits (50), Expect = 3e-018
Identities = 94/106 (88%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 342 catctccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
||||||||||| |||| ||||||||||||||||| ||| ||||||| || |||| |||||
Sbjct: 114982 catctccaactaccacctcaccaaccacaacgacatcaggctcttcagctccagtgactc 115041
Query: 402 ctggccgc-aggaccagatcatgcagatcaccgtcgccttcaacca 446
|| | || |||||||||||||||||||||| ||||||||||||||
Sbjct: 115042 ct-tcagcgaggaccagatcatgcagatcactgtcgccttcaacca 115086
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 257 ccaccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacg 316
|||||||||||| | |||||||| ||||| | ||||||||| ||||||||||||||||||
Sbjct: 114893 ccaccaacgtctagctcgaccacctctccctctccaactgcaaggacggcctcatcgacg 114952
Query: 317 tc 318
||
Sbjct: 114953 tc 114954
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| ||||| || |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 111807 tgccgatggggatttttccacgtggtgaacaacgactacacgcactggctcatgtatgcc 111866
Query: 541 at 542
||
Sbjct: 111867 at 111868
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 496 ttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
|||||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct: 115237 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccat 115283
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 690
|||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 111977 gtggaagaactgggtgtggcactctgaggaggacctgttcatg 112019
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttc 795
||||||||||||| ||| ||||||| || |||||||||||||||
Sbjct: 112084 tcaagcccaagcccggatcctacgtcacgaggctcacccgcttc 112127
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgc 88
|||||||||||| ||||||||||| || ||||||||||
Sbjct: 111264 cagcgacaagacgatcgacgggcggggagcgcaggtgc 111301
Score = 44.1 bits (22), Expect = 0.17
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttctccggc 801
||||||||||||| ||| ||||||| | |||||||| |||||| |||||
Sbjct: 115503 tcaagcccaagcctggatcctacgtcgcgaggctcacgcgcttcgccggc 115552
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 222 bits (112), Expect = 3e-055
Identities = 221/252 (87%), Gaps = 4/252 (1%)
Strand = Plus / Plus
Query: 204 gcacatcggctcccgcaccagggccgacggcgacggcatctccctcttctccgccaccaa 263
|||| |||||| ||||||| | ||||||||||||||||| | ||||| | |||||||
Sbjct: 3822247 gcacttcggcttccgcacccagtccgacggcgacggcatcagcatcttcggctccaccaa 3822306
Query: 264 cgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcgt-gc 322
||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| | ||
Sbjct: 3822307 cgtctggctcgaccacctctccctctccaactgccaggacggcctcatcgacgtcatcgc 3822366
Query: 323 agagctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtcatgc 382
|| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3822367 caag-tccaccggagtcaccatctccaactgccacctcaccaaccacaacgacgtcatgc 3822425
Query: 383 tcttcggcgccagcgactcctggccgc-aggaccagatcatgcagatcaccgtcgccttc 441
|||||||| |||||||||||| | || |||||||||||||||||||||||||||| |||
Sbjct: 3822426 tcttcggctccagcgactcct-tcagcgaggaccagatcatgcagatcaccgtcgctttc 3822484
Query: 442 aaccacttcggc 453
||||||||||||
Sbjct: 3822485 aaccacttcggc 3822496
Score = 99.6 bits (50), Expect = 3e-018
Identities = 94/106 (88%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 342 catctccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
||||||||||| |||| ||||||||||||||||| ||| ||||||| || |||| |||||
Sbjct: 3826746 catctccaactaccacctcaccaaccacaacgacatcaggctcttcagctccagtgactc 3826805
Query: 402 ctggccgc-aggaccagatcatgcagatcaccgtcgccttcaacca 446
|| | || |||||||||||||||||||||| ||||||||||||||
Sbjct: 3826806 ct-tcagcgaggaccagatcatgcagatcactgtcgccttcaacca 3826850
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 257 ccaccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacg 316
|||||||||||| | |||||||| ||||| | ||||||||| ||||||||||||||||||
Sbjct: 3826657 ccaccaacgtctagctcgaccacctctccctctccaactgcaaggacggcctcatcgacg 3826716
Query: 317 tc 318
||
Sbjct: 3826717 tc 3826718
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 496 ttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
|||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 3823586 ttccacgtggtgaacaacgactacacgcactggctcatgtatgccat 3823632
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 496 ttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
|||||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct: 3827001 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccat 3827047
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 690
|||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 3823741 gtggaagaactgggtgtggcactctgaggaggacctgttcatg 3823783
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttc 795
||||||||||||| ||| ||||||| || |||||||||||||||
Sbjct: 3823848 tcaagcccaagcccggatcctacgtcacgaggctcacccgcttc 3823891
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgc 88
|||||||||||| ||||||||||| || ||||||||||
Sbjct: 3822094 cagcgacaagacgatcgacgggcggggagcgcaggtgc 3822131
Score = 44.1 bits (22), Expect = 0.17
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttctccggc 801
||||||||||||| ||| ||||||| | |||||||| |||||| |||||
Sbjct: 3827267 tcaagcccaagcctggatcctacgtcgcgaggctcacgcgcttcgccggc 3827316
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 222 bits (112), Expect = 3e-055
Identities = 221/252 (87%), Gaps = 4/252 (1%)
Strand = Plus / Plus
Query: 204 gcacatcggctcccgcaccagggccgacggcgacggcatctccctcttctccgccaccaa 263
|||| |||||| ||||||| | ||||||||||||||||| | ||||| | |||||||
Sbjct: 21520984 gcacttcggcttccgcacccagtccgacggcgacggcatcagcatcttcggctccaccaa 21521043
Query: 264 cgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcgt-gc 322
||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| | ||
Sbjct: 21521044 cgtctggctcgaccacctctccctctccaactgccaggacggcctcatcgacgtcatcgc 21521103
Query: 323 agagctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtcatgc 382
|| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 21521104 caag-tccaccggagtcaccatctccaactgccacctcaccaaccacaacgacgtcatgc 21521162
Query: 383 tcttcggcgccagcgactcctggccgc-aggaccagatcatgcagatcaccgtcgccttc 441
|||||||| |||||||||||| | || |||||||||||||||||||||||||||| |||
Sbjct: 21521163 tcttcggctccagcgactcct-tcagcgaggaccagatcatgcagatcaccgtcgctttc 21521221
Query: 442 aaccacttcggc 453
||||||||||||
Sbjct: 21521222 aaccacttcggc 21521233
Score = 174 bits (88), Expect = 7e-041
Identities = 204/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | ||| || ||||| |||||||||||||| |||||||
Sbjct: 2286146 cgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctccat 2286087
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcag-agctccacggggatcaccatct 346
|||||||||| |||||||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct: 2286086 gtccaactgctccgacggcctcatcgacgccgt-cagcggctccaccgccatcaccatct 2286028
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |
Sbjct: 2286027 ccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacg 2285968
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||| || | |||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 2285967 cccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 2285908
Score = 143 bits (72), Expect = 2e-031
Identities = 176/208 (84%), Gaps = 2/208 (0%)
Strand = Plus / Plus
Query: 260 ccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcg 319
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct: 2323825 ccaacatctggatcgaccacgtctccatgtccaactgctccgacggcctcatcgacgccg 2323884
Query: 320 tgcagag-ctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtc 378
| ||| | |||||| | |||||||||||||| ||||||||||||| ||| || |||||
Sbjct: 2323885 t-cagcggctccaccgccatcaccatctccaaaggccacttcaccaagcacgaccacgtc 2323943
Query: 379 atgctcttcggcgccagcgactcctggccgcaggaccagatcatgcagatcaccgtcgcc 438
|||||||||||||||||| || | | |||||| || | |||||||||||||| ||
Sbjct: 2323944 atgctcttcggcgccagcaacagcgacgcccaggacgaggtgatgcagatcaccgtggcg 2324003
Query: 439 ttcaaccacttcggcaggggcctggtgc 466
|||||||||||||||| |||||| ||||
Sbjct: 2324004 ttcaaccacttcggcaagggccttgtgc 2324031
Score = 105 bits (53), Expect = 5e-020
Identities = 122/145 (84%)
Strand = Plus / Minus
Query: 405 gccgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggt 464
|||| ||||| ||||||||||| | || | || ||||||||||| |||| ||| || ||
Sbjct: 2290535 gccgaaggacaagatcatgcaggtaacgctggcattcaaccactttggcaaggggctcgt 2290476
Query: 465 gcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgca 524
|||| ||||||| |||||| | | || ||||||||| | || |||||||||||||||||
Sbjct: 2290475 gcagaggatgccgaggtgcaggtttggattcttccacatggtgaacaacgactacacgca 2290416
Query: 525 ctggctcatgtacgccattggcggc 549
|||||||||||||||||| ||||||
Sbjct: 2290415 ctggctcatgtacgccatcggcggc 2290391
Score = 99.6 bits (50), Expect = 3e-018
Identities = 94/106 (88%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 342 catctccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
||||||||||| |||| ||||||||||||||||| ||| ||||||| || |||| |||||
Sbjct: 21525483 catctccaactaccacctcaccaaccacaacgacatcaggctcttcagctccagtgactc 21525542
Query: 402 ctggccgc-aggaccagatcatgcagatcaccgtcgccttcaacca 446
|| | || |||||||||||||||||||||| ||||||||||||||
Sbjct: 21525543 ct-tcagcgaggaccagatcatgcagatcactgtcgccttcaacca 21525587
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2324147 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 2324196
Score = 91.7 bits (46), Expect = 8e-016
Identities = 115/138 (83%)
Strand = Plus / Minus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | | ||| |||| |||||||||||||| |||||||
Sbjct: 2290800 cgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctccat 2290741
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
|||||||||| ||||||||||||||| || | ||||||| | |||||||||||
Sbjct: 2290740 gtccaactgctccgacggcctcatcgacatcaccgacggctccaccgccatcaccatctc 2290681
Query: 348 caactgccacttcaccaa 365
||||| ||||||||||||
Sbjct: 2290680 caactcccacttcaccaa 2290663
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2285792 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 2285743
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 15 catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcg 74
|||||||||||||||| |||||||||| || ||| | | |||||||||||||||| ||
Sbjct: 2286356 catgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccg 2286297
Query: 75 cggcgcgcaggtgcacatc 93
||||||||||||||||||
Sbjct: 2286296 tggcgcgcaggtgcacatc 2286278
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 257 ccaccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacg 316
|||||||||||| | |||||||| ||||| | ||||||||| ||||||||||||||||||
Sbjct: 21525394 ccaccaacgtctagctcgaccacctctccctctccaactgcaaggacggcctcatcgacg 21525453
Query: 317 tc 318
||
Sbjct: 21525454 tc 21525455
Score = 73.8 bits (37), Expect = 2e-010
Identities = 84/99 (84%), Gaps = 3/99 (3%)
Strand = Plus / Minus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccgggat 110
||||||||||||||||||||| ||||||||||||||||| || || |||||| |||
Sbjct: 2290974 cagcgacaagaccatcgacggccgcggcgcgcaggtgca---cgtcaccggcgcgcagat 2290918
Query: 111 cacggtgcagctggcgcaaaacgtcatcatccacaacct 149
|||||||||| || | ||||||||||||||||||||
Sbjct: 2290917 cacggtgcaggcggtgagcaacgtcatcatccacaacct 2290879
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 496 ttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
|||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 21522323 ttccacgtggtgaacaacgactacacgcactggctcatgtatgccat 21522369
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 496 ttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
|||||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct: 21525738 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccat 21525784
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 690
|||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 21522478 gtggaagaactgggtgtggcactctgaggaggacctgttcatg 21522520
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttc 795
||||||||||||| ||| ||||||| || |||||||||||||||
Sbjct: 21522585 tcaagcccaagcccggatcctacgtcacgaggctcacccgcttc 21522628
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgc 88
|||||||||||| ||||||||||| || ||||||||||
Sbjct: 21520831 cagcgacaagacgatcgacgggcggggagcgcaggtgc 21520868
Score = 44.1 bits (22), Expect = 0.17
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttctccggc 801
||||||||||||| ||| ||||||| | |||||||| |||||| |||||
Sbjct: 21526004 tcaagcccaagcctggatcctacgtcgcgaggctcacgcgcttcgccggc 21526053
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 222 bits (112), Expect = 3e-055
Identities = 221/252 (87%), Gaps = 4/252 (1%)
Strand = Plus / Plus
Query: 204 gcacatcggctcccgcaccagggccgacggcgacggcatctccctcttctccgccaccaa 263
|||| |||||| ||||||| | ||||||||||||||||| | ||||| | |||||||
Sbjct: 22474284 gcacttcggcttccgcacccagtccgacggcgacggcatcagcatcttcggctccaccaa 22474343
Query: 264 cgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcgt-gc 322
||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||| | ||
Sbjct: 22474344 cgtctggctcgaccacctctccctctccaactgccaggacggcctcatcgacgtcatcgc 22474403
Query: 323 agagctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtcatgc 382
|| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 22474404 caag-tccaccggagtcaccatctccaactgccacctcaccaaccacaacgacgtcatgc 22474462
Query: 383 tcttcggcgccagcgactcctggccgc-aggaccagatcatgcagatcaccgtcgccttc 441
|||||||| |||||||||||| | || |||||||||||||||||||||||||||| |||
Sbjct: 22474463 tcttcggctccagcgactcct-tcagcgaggaccagatcatgcagatcaccgtcgctttc 22474521
Query: 442 aaccacttcggc 453
||||||||||||
Sbjct: 22474522 aaccacttcggc 22474533
Score = 174 bits (88), Expect = 7e-041
Identities = 204/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | ||| || ||||| |||||||||||||| |||||||
Sbjct: 2377564 cgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctccat 2377623
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcag-agctccacggggatcaccatct 346
|||||||||| |||||||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct: 2377624 gtccaactgctccgacggcctcatcgacgccgt-cagcggctccaccgccatcaccatct 2377682
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |
Sbjct: 2377683 ccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacg 2377742
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||| || | |||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 2377743 cccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 2377802
Score = 174 bits (88), Expect = 7e-041
Identities = 204/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | ||| || ||||| |||||||||||||| |||||||
Sbjct: 2336278 cgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctccat 2336219
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcag-agctccacggggatcaccatct 346
|||||||||| |||||||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct: 2336218 gtccaactgctccgacggcctcatcgacgccgt-cagcggctccaccgccatcaccatct 2336160
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |
Sbjct: 2336159 ccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacg 2336100
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||| || | |||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 2336099 cccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 2336040
Score = 105 bits (53), Expect = 5e-020
Identities = 122/145 (84%)
Strand = Plus / Plus
Query: 405 gccgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggt 464
|||| ||||| ||||||||||| | || | || ||||||||||| |||| ||| || ||
Sbjct: 2373175 gccgaaggacaagatcatgcaggtaacgctggcattcaaccactttggcaaggggctcgt 2373234
Query: 465 gcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgca 524
|||| ||||||| |||||| | | || ||||||||| | || |||||||||||||||||
Sbjct: 2373235 gcagaggatgccgaggtgcaggtttggattcttccacatggtgaacaacgactacacgca 2373294
Query: 525 ctggctcatgtacgccattggcggc 549
|||||||||||||||||| ||||||
Sbjct: 2373295 ctggctcatgtacgccatcggcggc 2373319
Score = 99.6 bits (50), Expect = 3e-018
Identities = 94/106 (88%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 342 catctccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
||||||||||| |||| ||||||||||||||||| ||| ||||||| || |||| |||||
Sbjct: 22477849 catctccaactaccacctcaccaaccacaacgacatcaggctcttcagctccagtgactc 22477908
Query: 402 ctggccgc-aggaccagatcatgcagatcaccgtcgccttcaacca 446
|| | || |||||||||||||||||||||| ||||||||||||||
Sbjct: 22477909 ct-tcagcgaggaccagatcatgcagatcactgtcgccttcaacca 22477953
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2377918 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 2377967
Score = 91.7 bits (46), Expect = 8e-016
Identities = 115/138 (83%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | | ||| |||| |||||||||||||| |||||||
Sbjct: 2372910 cgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctccat 2372969
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
|||||||||| ||||||||||||||| || | ||||||| | |||||||||||
Sbjct: 2372970 gtccaactgctccgacggcctcatcgacatcaccgacggctccaccgccatcaccatctc 2373029
Query: 348 caactgccacttcaccaa 365
||||| ||||||||||||
Sbjct: 2373030 caactcccacttcaccaa 2373047
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2335924 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 2335875
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 15 catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcg 74
|||||||||||||||| |||||||||| || ||| | | |||||||||||||||| ||
Sbjct: 2377354 catgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccg 2377413
Query: 75 cggcgcgcaggtgcacatc 93
||||||||||||||||||
Sbjct: 2377414 tggcgcgcaggtgcacatc 2377432
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 15 catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcg 74
|||||||||||||||| |||||||||| || ||| | | |||||||||||||||| ||
Sbjct: 2336488 catgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccg 2336429
Query: 75 cggcgcgcaggtgcacatc 93
||||||||||||||||||
Sbjct: 2336428 tggcgcgcaggtgcacatc 2336410
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 257 ccaccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacg 316
|||||||||||| | |||||||| ||||| | ||||||||| ||||||||||||||||||
Sbjct: 22477760 ccaccaacgtctagctcgaccacctctccctctccaactgcaaggacggcctcatcgacg 22477819
Query: 317 tc 318
||
Sbjct: 22477820 tc 22477821
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 481 tgccgctggggcttcttccacgttgtcaacaacgactacacgcactggctcatgtacgcc 540
||||| ||||| || |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct: 22474674 tgccgatggggatttttccacgtggtgaacaacgactacacgcactggctcatgtatgcc 22474733
Query: 541 at 542
||
Sbjct: 22474734 at 22474735
Score = 73.8 bits (37), Expect = 2e-010
Identities = 84/99 (84%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccgggat 110
||||||||||||||||||||| ||||||||||||||||| || || |||||| |||
Sbjct: 2372736 cagcgacaagaccatcgacggccgcggcgcgcaggtgca---cgtcaccggcgcgcagat 2372792
Query: 111 cacggtgcagctggcgcaaaacgtcatcatccacaacct 149
|||||||||| || | ||||||||||||||||||||
Sbjct: 2372793 cacggtgcaggcggtgagcaacgtcatcatccacaacct 2372831
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 496 ttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
|||||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct: 22478104 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccat 22478150
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 690
|||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 22474844 gtggaagaactgggtgtggcactctgaggaggacctgttcatg 22474886
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttc 795
||||||||||||| ||| ||||||| || |||||||||||||||
Sbjct: 22474951 tcaagcccaagcccggatcctacgtcacgaggctcacccgcttc 22474994
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgc 88
|||||||||||| ||||||||||| || ||||||||||
Sbjct: 22474131 cagcgacaagacgatcgacgggcggggagcgcaggtgc 22474168
Score = 44.1 bits (22), Expect = 0.17
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttctccggc 801
||||||||||||| ||| ||||||| | |||||||| |||||| |||||
Sbjct: 22478370 tcaagcccaagcctggatcctacgtcgcgaggctcacgcgcttcgccggc 22478419
>dbj|AK070509.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054E18, full
insert sequence
Length = 1870
Score = 178 bits (90), Expect = 4e-042
Identities = 264/322 (81%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | | ||| |||| |||||||||||||| |||||||
Sbjct: 930 cgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctccat 989
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
|||||||||| ||||||||||||||| || | ||||||| | |||||||||||
Sbjct: 990 gtccaactgctccgacggcctcatcgacatcaccgacggctccaccgccatcaccatctc 1049
Query: 348 caactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggcc 407
||||| |||||||||||| ||| | |||| ||||| ||||| || ||||| || |||
Sbjct: 1050 caactcccacttcaccaagcacgatcacgtgatgctgttcggtgcacgcgacgactcgcc 1109
Query: 408 gcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgca 467
| ||||| ||||||||||| | || | || ||||||||||| |||| ||| || |||||
Sbjct: 1110 gaaggacaagatcatgcaggtaacgctggcattcaaccactttggcaaggggctcgtgca 1169
Query: 468 gcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgcactg 527
| ||||||| |||||| | | || ||||||||| | || ||||||||||||||||||||
Sbjct: 1170 gaggatgccgaggtgcaggtttggattcttccacatggtgaacaacgactacacgcactg 1229
Query: 528 gctcatgtacgccattggcggc 549
||||||||||||||| ||||||
Sbjct: 1230 gctcatgtacgccatcggcggc 1251
Score = 73.8 bits (37), Expect = 2e-010
Identities = 84/99 (84%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccgggat 110
||||||||||||||||||||| ||||||||||||||||| || || |||||| |||
Sbjct: 756 cagcgacaagaccatcgacggccgcggcgcgcaggtgca---cgtcaccggcgcgcagat 812
Query: 111 cacggtgcagctggcgcaaaacgtcatcatccacaacct 149
|||||||||| || | ||||||||||||||||||||
Sbjct: 813 cacggtgcaggcggtgagcaacgtcatcatccacaacct 851
>gb|AACV01013018.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013018, whole
genome shotgun sequence
Length = 32067
Score = 174 bits (88), Expect = 7e-041
Identities = 204/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | ||| || ||||| |||||||||||||| |||||||
Sbjct: 12023 cgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctccat 12082
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcag-agctccacggggatcaccatct 346
|||||||||| |||||||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct: 12083 gtccaactgctccgacggcctcatcgacgccgt-cagcggctccaccgccatcaccatct 12141
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |
Sbjct: 12142 ccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacg 12201
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||| || | |||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 12202 cccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 12261
Score = 105 bits (53), Expect = 5e-020
Identities = 122/145 (84%)
Strand = Plus / Plus
Query: 405 gccgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggt 464
|||| ||||| ||||||||||| | || | || ||||||||||| |||| ||| || ||
Sbjct: 7634 gccgaaggacaagatcatgcaggtaacgctggcattcaaccactttggcaaggggctcgt 7693
Query: 465 gcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgca 524
|||| ||||||| |||||| | | || ||||||||| | || |||||||||||||||||
Sbjct: 7694 gcagaggatgccgaggtgcaggtttggattcttccacatggtgaacaacgactacacgca 7753
Query: 525 ctggctcatgtacgccattggcggc 549
|||||||||||||||||| ||||||
Sbjct: 7754 ctggctcatgtacgccatcggcggc 7778
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 12377 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 12426
Score = 91.7 bits (46), Expect = 8e-016
Identities = 115/138 (83%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | | ||| |||| |||||||||||||| |||||||
Sbjct: 7369 cgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctccat 7428
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
|||||||||| ||||||||||||||| || | ||||||| | |||||||||||
Sbjct: 7429 gtccaactgctccgacggcctcatcgacatcaccgacggctccaccgccatcaccatctc 7488
Query: 348 caactgccacttcaccaa 365
||||| ||||||||||||
Sbjct: 7489 caactcccacttcaccaa 7506
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 15 catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcg 74
|||||||||||||||| |||||||||| || ||| | | |||||||||||||||| ||
Sbjct: 11813 catgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccg 11872
Query: 75 cggcgcgcaggtgcacatc 93
||||||||||||||||||
Sbjct: 11873 tggcgcgcaggtgcacatc 11891
Score = 73.8 bits (37), Expect = 2e-010
Identities = 84/99 (84%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccgggat 110
||||||||||||||||||||| ||||||||||||||||| || || |||||| |||
Sbjct: 7195 cagcgacaagaccatcgacggccgcggcgcgcaggtgca---cgtcaccggcgcgcagat 7251
Query: 111 cacggtgcagctggcgcaaaacgtcatcatccacaacct 149
|||||||||| || | ||||||||||||||||||||
Sbjct: 7252 cacggtgcaggcggtgagcaacgtcatcatccacaacct 7290
>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0007O20
Length = 147363
Score = 174 bits (88), Expect = 7e-041
Identities = 204/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | ||| || ||||| |||||||||||||| |||||||
Sbjct: 99365 cgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctccat 99424
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcag-agctccacggggatcaccatct 346
|||||||||| |||||||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct: 99425 gtccaactgctccgacggcctcatcgacgccgt-cagcggctccaccgccatcaccatct 99483
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |
Sbjct: 99484 ccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacg 99543
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||| || | |||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 99544 cccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 99603
Score = 174 bits (88), Expect = 7e-041
Identities = 204/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | ||| || ||||| |||||||||||||| |||||||
Sbjct: 58079 cgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctccat 58020
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcag-agctccacggggatcaccatct 346
|||||||||| |||||||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct: 58019 gtccaactgctccgacggcctcatcgacgccgt-cagcggctccaccgccatcaccatct 57961
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |
Sbjct: 57960 ccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacg 57901
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||| || | |||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 57900 cccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 57841
Score = 105 bits (53), Expect = 5e-020
Identities = 122/145 (84%)
Strand = Plus / Plus
Query: 405 gccgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggt 464
|||| ||||| ||||||||||| | || | || ||||||||||| |||| ||| || ||
Sbjct: 94976 gccgaaggacaagatcatgcaggtaacgctggcattcaaccactttggcaaggggctcgt 95035
Query: 465 gcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgca 524
|||| ||||||| |||||| | | || ||||||||| | || |||||||||||||||||
Sbjct: 95036 gcagaggatgccgaggtgcaggtttggattcttccacatggtgaacaacgactacacgca 95095
Query: 525 ctggctcatgtacgccattggcggc 549
|||||||||||||||||| ||||||
Sbjct: 95096 ctggctcatgtacgccatcggcggc 95120
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 99719 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 99768
Score = 91.7 bits (46), Expect = 8e-016
Identities = 115/138 (83%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | | ||| |||| |||||||||||||| |||||||
Sbjct: 94711 cgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctccat 94770
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
|||||||||| ||||||||||||||| || | ||||||| | |||||||||||
Sbjct: 94771 gtccaactgctccgacggcctcatcgacatcaccgacggctccaccgccatcaccatctc 94830
Query: 348 caactgccacttcaccaa 365
||||| ||||||||||||
Sbjct: 94831 caactcccacttcaccaa 94848
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 57725 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 57676
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 15 catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcg 74
|||||||||||||||| |||||||||| || ||| | | |||||||||||||||| ||
Sbjct: 99155 catgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccg 99214
Query: 75 cggcgcgcaggtgcacatc 93
||||||||||||||||||
Sbjct: 99215 tggcgcgcaggtgcacatc 99233
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 15 catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcg 74
|||||||||||||||| |||||||||| || ||| | | |||||||||||||||| ||
Sbjct: 58289 catgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccg 58230
Query: 75 cggcgcgcaggtgcacatc 93
||||||||||||||||||
Sbjct: 58229 tggcgcgcaggtgcacatc 58211
Score = 73.8 bits (37), Expect = 2e-010
Identities = 84/99 (84%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccgggat 110
||||||||||||||||||||| ||||||||||||||||| || || |||||| |||
Sbjct: 94537 cagcgacaagaccatcgacggccgcggcgcgcaggtgca---cgtcaccggcgcgcagat 94593
Query: 111 cacggtgcagctggcgcaaaacgtcatcatccacaacct 149
|||||||||| || | ||||||||||||||||||||
Sbjct: 94594 cacggtgcaggcggtgagcaacgtcatcatccacaacct 94632
>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0036F10
Length = 149415
Score = 174 bits (88), Expect = 7e-041
Identities = 204/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | ||| || ||||| |||||||||||||| |||||||
Sbjct: 9022 cgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctccat 9081
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcag-agctccacggggatcaccatct 346
|||||||||| |||||||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct: 9082 gtccaactgctccgacggcctcatcgacgccgt-cagcggctccaccgccatcaccatct 9140
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |
Sbjct: 9141 ccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacg 9200
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||| || | |||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 9201 cccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 9260
Score = 105 bits (53), Expect = 5e-020
Identities = 122/145 (84%)
Strand = Plus / Plus
Query: 405 gccgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggt 464
|||| ||||| ||||||||||| | || | || ||||||||||| |||| ||| || ||
Sbjct: 4633 gccgaaggacaagatcatgcaggtaacgctggcattcaaccactttggcaaggggctcgt 4692
Query: 465 gcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgca 524
|||| ||||||| |||||| | | || ||||||||| | || |||||||||||||||||
Sbjct: 4693 gcagaggatgccgaggtgcaggtttggattcttccacatggtgaacaacgactacacgca 4752
Query: 525 ctggctcatgtacgccattggcggc 549
|||||||||||||||||| ||||||
Sbjct: 4753 ctggctcatgtacgccatcggcggc 4777
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9376 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 9425
Score = 91.7 bits (46), Expect = 8e-016
Identities = 115/138 (83%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | | ||| |||| |||||||||||||| |||||||
Sbjct: 4368 cgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctccat 4427
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
|||||||||| ||||||||||||||| || | ||||||| | |||||||||||
Sbjct: 4428 gtccaactgctccgacggcctcatcgacatcaccgacggctccaccgccatcaccatctc 4487
Query: 348 caactgccacttcaccaa 365
||||| ||||||||||||
Sbjct: 4488 caactcccacttcaccaa 4505
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 15 catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcg 74
|||||||||||||||| |||||||||| || ||| | | |||||||||||||||| ||
Sbjct: 8812 catgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccg 8871
Query: 75 cggcgcgcaggtgcacatc 93
||||||||||||||||||
Sbjct: 8872 tggcgcgcaggtgcacatc 8890
Score = 73.8 bits (37), Expect = 2e-010
Identities = 84/99 (84%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccgggat 110
||||||||||||||||||||| ||||||||||||||||| || || |||||| |||
Sbjct: 4194 cagcgacaagaccatcgacggccgcggcgcgcaggtgca---cgtcaccggcgcgcagat 4250
Query: 111 cacggtgcagctggcgcaaaacgtcatcatccacaacct 149
|||||||||| || | ||||||||||||||||||||
Sbjct: 4251 cacggtgcaggcggtgagcaacgtcatcatccacaacct 4289
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 174 bits (88), Expect = 7e-041
Identities = 204/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | ||| || ||||| |||||||||||||| |||||||
Sbjct: 2341141 cgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctccat 2341200
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcag-agctccacggggatcaccatct 346
|||||||||| |||||||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct: 2341201 gtccaactgctccgacggcctcatcgacgccgt-cagcggctccaccgccatcaccatct 2341259
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |
Sbjct: 2341260 ccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacg 2341319
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||| || | |||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 2341320 cccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 2341379
Score = 174 bits (88), Expect = 7e-041
Identities = 204/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | ||| || ||||| |||||||||||||| |||||||
Sbjct: 2299855 cgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctccat 2299796
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcag-agctccacggggatcaccatct 346
|||||||||| |||||||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct: 2299795 gtccaactgctccgacggcctcatcgacgccgt-cagcggctccaccgccatcaccatct 2299737
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |
Sbjct: 2299736 ccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacg 2299677
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||| || | |||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 2299676 cccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 2299617
Score = 105 bits (53), Expect = 5e-020
Identities = 122/145 (84%)
Strand = Plus / Plus
Query: 405 gccgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggt 464
|||| ||||| ||||||||||| | || | || ||||||||||| |||| ||| || ||
Sbjct: 2336752 gccgaaggacaagatcatgcaggtaacgctggcattcaaccactttggcaaggggctcgt 2336811
Query: 465 gcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgca 524
|||| ||||||| |||||| | | || ||||||||| | || |||||||||||||||||
Sbjct: 2336812 gcagaggatgccgaggtgcaggtttggattcttccacatggtgaacaacgactacacgca 2336871
Query: 525 ctggctcatgtacgccattggcggc 549
|||||||||||||||||| ||||||
Sbjct: 2336872 ctggctcatgtacgccatcggcggc 2336896
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2341495 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 2341544
Score = 91.7 bits (46), Expect = 8e-016
Identities = 115/138 (83%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | | ||| |||| |||||||||||||| |||||||
Sbjct: 2336487 cgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctccat 2336546
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
|||||||||| ||||||||||||||| || | ||||||| | |||||||||||
Sbjct: 2336547 gtccaactgctccgacggcctcatcgacatcaccgacggctccaccgccatcaccatctc 2336606
Query: 348 caactgccacttcaccaa 365
||||| ||||||||||||
Sbjct: 2336607 caactcccacttcaccaa 2336624
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2299501 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 2299452
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 15 catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcg 74
|||||||||||||||| |||||||||| || ||| | | |||||||||||||||| ||
Sbjct: 2340931 catgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccg 2340990
Query: 75 cggcgcgcaggtgcacatc 93
||||||||||||||||||
Sbjct: 2340991 tggcgcgcaggtgcacatc 2341009
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 15 catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcg 74
|||||||||||||||| |||||||||| || ||| | | |||||||||||||||| ||
Sbjct: 2300065 catgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccg 2300006
Query: 75 cggcgcgcaggtgcacatc 93
||||||||||||||||||
Sbjct: 2300005 tggcgcgcaggtgcacatc 2299987
Score = 73.8 bits (37), Expect = 2e-010
Identities = 84/99 (84%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccgggat 110
||||||||||||||||||||| ||||||||||||||||| || || |||||| |||
Sbjct: 2336313 cagcgacaagaccatcgacggccgcggcgcgcaggtgca---cgtcaccggcgcgcagat 2336369
Query: 111 cacggtgcagctggcgcaaaacgtcatcatccacaacct 149
|||||||||| || | ||||||||||||||||||||
Sbjct: 2336370 cacggtgcaggcggtgagcaacgtcatcatccacaacct 2336408
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 174 bits (88), Expect = 7e-041
Identities = 204/240 (85%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | ||| || ||||| |||||||||||||| |||||||
Sbjct: 2286146 cgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctccat 2286087
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcag-agctccacggggatcaccatct 346
|||||||||| |||||||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct: 2286086 gtccaactgctccgacggcctcatcgacgccgt-cagcggctccaccgccatcaccatct 2286028
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| ||| || ||||||||||||||||||||||| || |
Sbjct: 2286027 ccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacg 2285968
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||| || | |||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 2285967 cccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 2285908
Score = 143 bits (72), Expect = 2e-031
Identities = 176/208 (84%), Gaps = 2/208 (0%)
Strand = Plus / Plus
Query: 260 ccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcg 319
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct: 2323825 ccaacatctggatcgaccacgtctccatgtccaactgctccgacggcctcatcgacgccg 2323884
Query: 320 tgcagag-ctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtc 378
| ||| | |||||| | |||||||||||||| ||||||||||||| ||| || |||||
Sbjct: 2323885 t-cagcggctccaccgccatcaccatctccaaaggccacttcaccaagcacgaccacgtc 2323943
Query: 379 atgctcttcggcgccagcgactcctggccgcaggaccagatcatgcagatcaccgtcgcc 438
|||||||||||||||||| || | | |||||| || | |||||||||||||| ||
Sbjct: 2323944 atgctcttcggcgccagcaacagcgacgcccaggacgaggtgatgcagatcaccgtggcg 2324003
Query: 439 ttcaaccacttcggcaggggcctggtgc 466
|||||||||||||||| |||||| ||||
Sbjct: 2324004 ttcaaccacttcggcaagggccttgtgc 2324031
Score = 105 bits (53), Expect = 5e-020
Identities = 122/145 (84%)
Strand = Plus / Minus
Query: 405 gccgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggt 464
|||| ||||| ||||||||||| | || | || ||||||||||| |||| ||| || ||
Sbjct: 2290535 gccgaaggacaagatcatgcaggtaacgctggcattcaaccactttggcaaggggctcgt 2290476
Query: 465 gcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacgca 524
|||| ||||||| |||||| | | || ||||||||| | || |||||||||||||||||
Sbjct: 2290475 gcagaggatgccgaggtgcaggtttggattcttccacatggtgaacaacgactacacgca 2290416
Query: 525 ctggctcatgtacgccattggcggc 549
|||||||||||||||||| ||||||
Sbjct: 2290415 ctggctcatgtacgccatcggcggc 2290391
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2324147 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 2324196
Score = 91.7 bits (46), Expect = 8e-016
Identities = 115/138 (83%)
Strand = Plus / Minus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | | ||| |||| |||||||||||||| |||||||
Sbjct: 2290800 cgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctccat 2290741
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcagagctccacggggatcaccatctc 347
|||||||||| ||||||||||||||| || | ||||||| | |||||||||||
Sbjct: 2290740 gtccaactgctccgacggcctcatcgacatcaccgacggctccaccgccatcaccatctc 2290681
Query: 348 caactgccacttcaccaa 365
||||| ||||||||||||
Sbjct: 2290680 caactcccacttcaccaa 2290663
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2285792 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 2285743
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 15 catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcg 74
|||||||||||||||| |||||||||| || ||| | | |||||||||||||||| ||
Sbjct: 2286356 catgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccg 2286297
Query: 75 cggcgcgcaggtgcacatc 93
||||||||||||||||||
Sbjct: 2286296 tggcgcgcaggtgcacatc 2286278
Score = 73.8 bits (37), Expect = 2e-010
Identities = 84/99 (84%), Gaps = 3/99 (3%)
Strand = Plus / Minus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgccgggat 110
||||||||||||||||||||| ||||||||||||||||| || || |||||| |||
Sbjct: 2290974 cagcgacaagaccatcgacggccgcggcgcgcaggtgca---cgtcaccggcgcgcagat 2290918
Query: 111 cacggtgcagctggcgcaaaacgtcatcatccacaacct 149
|||||||||| || | ||||||||||||||||||||
Sbjct: 2290917 cacggtgcaggcggtgagcaacgtcatcatccacaacct 2290879
>dbj|AK100191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035P11, full
insert sequence
Length = 1659
Score = 167 bits (84), Expect = 2e-038
Identities = 203/240 (84%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 228 cgacggcgacggcatctccctcttctccgccaccaacgtctggatcgaccacatctccat 287
||||||||||||||||||| || | ||| || ||||| |||||||||||||| |||||||
Sbjct: 905 cgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctccat 964
Query: 288 gtccaactgcgaggacggcctcatcgacgtcgtgcag-agctccacggggatcaccatct 346
|||||||||| |||||||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct: 965 gtccaactgctccgacggcctcatcgacgccgt-cagcggctccaccgccatcaccatct 1023
Query: 347 ccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactcctggc 406
||||| ||||||||||||| ||| || |||||||||||||||||||| || || |
Sbjct: 1024 ccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccggcaacagcgacg 1083
Query: 407 cgcaggaccagatcatgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
| |||||| || | |||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 1084 cccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 1143
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 1210
Score = 77.8 bits (39), Expect = 1e-011
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 15 catgatcatccagctctcgcaggagctgctcatgagcagcgacaagaccatcgacgggcg 74
|||||||||||||||| |||||||||| || ||| | | |||||||||||||||| ||
Sbjct: 695 catgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccg 754
Query: 75 cggcgcgcaggtgcacatc 93
||||||||||||||||||
Sbjct: 755 tggcgcgcaggtgcacatc 773
>gb|AACV01013020.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013020,
whole genome shotgun sequence
Length = 5783
Score = 143 bits (72), Expect = 2e-031
Identities = 176/208 (84%), Gaps = 2/208 (0%)
Strand = Plus / Plus
Query: 260 ccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacgtcg 319
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct: 12 ccaacatctggatcgaccacgtctccatgtccaactgctccgacggcctcatcgacgccg 71
Query: 320 tgcagag-ctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtc 378
| ||| | |||||| | |||||||||||||| ||||||||||||| ||| || |||||
Sbjct: 72 t-cagcggctccaccgccatcaccatctccaaaggccacttcaccaagcacgaccacgtc 130
Query: 379 atgctcttcggcgccagcgactcctggccgcaggaccagatcatgcagatcaccgtcgcc 438
|||||||||||||||||| || | | |||||| || | |||||||||||||| ||
Sbjct: 131 atgctcttcggcgccagcaacagcgacgcccaggacgaggtgatgcagatcaccgtggcg 190
Query: 439 ttcaaccacttcggcaggggcctggtgc 466
|||||||||||||||| |||||| ||||
Sbjct: 191 ttcaaccacttcggcaagggccttgtgc 218
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 383
>gb|CZ444110.1|CZ444110 UCDRdSpm486_3.1 UCD RdSpm Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RdSpm486_3.1, DNA sequence
Length = 439
Score = 111 bits (56), Expect = 9e-022
Identities = 100/112 (89%), Gaps = 2/112 (1%)
Strand = Plus / Minus
Query: 505 gtcaacaacgactacacgcactggctcatgtacgccattggcggcggcgacgcg-ccaac 563
|||||||||||||||||||||||||||||||||||||| ||||||||| | | | || ||
Sbjct: 439 gtcaacaacgactacacgcactggctcatgtacgccatcggcggcggc-atgagccctac 381
Query: 564 catcatcagccagggcaaccgctacatagcaccaccaaacatcgccgccaaa 615
|||| |||||||||||||||| ||||| || || || |||||||||||||||
Sbjct: 380 catcctcagccagggcaaccgatacatcgcccctcccaacatcgccgccaaa 329
>gb|CV733041.1|CV733041 FLO--07-M13.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--07-M13,
mRNA sequence
Length = 503
Score = 109 bits (55), Expect = 3e-021
Identities = 141/167 (84%), Gaps = 2/167 (1%)
Strand = Plus / Plus
Query: 301 gacggcctcatcgacgtcgtgcagag-ctccacggggatcaccatctccaactgccactt 359
|||||||||||||||| ||| ||| | |||||| | ||||||||||||||| |||||||
Sbjct: 12 gacggcctcatcgacgccgt-cagcggctccaccgccatcaccatctccaacggccactt 70
Query: 360 caccaaccacaacgacgtcatgctcttcggcgccagcgactcctggccgcaggaccagat 419
|||||| ||| || ||||||||||||||||||||||| || | | |||||| || |
Sbjct: 71 caccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacgcccaggacgaggt 130
Query: 420 catgcagatcaccgtcgccttcaaccacttcggcaggggcctggtgc 466
|||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct: 131 gatgcagatcaccgtggcgttcaaccacttcggcaagggccttgtgc 177
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 244
>gb|AACV01014424.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014424, whole
genome shotgun sequence
Length = 13752
Score = 99.6 bits (50), Expect = 3e-018
Identities = 94/106 (88%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 342 catctccaactgccacttcaccaaccacaacgacgtcatgctcttcggcgccagcgactc 401
||||||||||| |||| ||||||||||||||||| ||| ||||||| || |||| |||||
Sbjct: 3205 catctccaactaccacctcaccaaccacaacgacatcaggctcttcagctccagtgactc 3264
Query: 402 ctggccgc-aggaccagatcatgcagatcaccgtcgccttcaacca 446
|| | || |||||||||||||||||||||| ||||||||||||||
Sbjct: 3265 ct-tcagcgaggaccagatcatgcagatcactgtcgccttcaacca 3309
Score = 75.8 bits (38), Expect = 5e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 257 ccaccaacgtctggatcgaccacatctccatgtccaactgcgaggacggcctcatcgacg 316
|||||||||||| | |||||||| ||||| | ||||||||| ||||||||||||||||||
Sbjct: 3116 ccaccaacgtctagctcgaccacctctccctctccaactgcaaggacggcctcatcgacg 3175
Query: 317 tc 318
||
Sbjct: 3176 tc 3177
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 496 ttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
|||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 45 ttccacgtggtgaacaacgactacacgcactggctcatgtatgccat 91
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 496 ttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
|||||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct: 3460 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccat 3506
Score = 61.9 bits (31), Expect = 7e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 648 gtggaagaactgggtgtggcacacggaggacgacctgttcatg 690
|||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 200 gtggaagaactgggtgtggcactctgaggaggacctgttcatg 242
Score = 56.0 bits (28), Expect = 4e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttc 795
||||||||||||| ||| ||||||| || |||||||||||||||
Sbjct: 307 tcaagcccaagcccggatcctacgtcacgaggctcacccgcttc 350
Score = 44.1 bits (22), Expect = 0.17
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 752 tcaagcccaagccaggaacctacgttacaaggctcacccgcttctccggc 801
||||||||||||| ||| ||||||| | |||||||| |||||| |||||
Sbjct: 3726 tcaagcccaagcctggatcctacgtcgcgaggctcacgcgcttcgccggc 3775
>gb|C73240.1|C73240 C73240 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3490_1A, mRNA sequence
Length = 405
Score = 91.7 bits (46), Expect = 8e-016
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 493 ttcttccacgttgtcaacaacgactacacgcactggctcatgtacgccat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 22 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccat 71
>gb|AQ862064.1|AQ862064 nbeb0018O13f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0018O13f, DNA sequence
Length = 787
Score = 73.8 bits (37), Expect = 2e-010
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 51 cagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgc 95
||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 674 cagcgacaagaccatcgacggccgcggcgcgcatgtgcacatcgc 718
>gb|AQ865437.1|AQ865437 nbeb0025I06f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0025I06f, DNA sequence
Length = 714
Score = 71.9 bits (36), Expect = 8e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 50 gcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatc 93
|||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 670 gcagcgacaagaccatcgactggcgcggagcgcaggtgcacatc 713
>gb|AZ135244.1|AZ135244 OSJNBb0115A18r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0115A18r, DNA
sequence
Length = 589
Score = 65.9 bits (33), Expect = 5e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 33 gcaggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacat 92
|||||||||| |||||| |||| ||||||||||||||| || ||||| | ||||||||
Sbjct: 308 gcaggagctgatcatgaacagcttcaagaccatcgacggccgtggcgccaacgtgcacat 367
Query: 93 cgccaacggcgcc 105
|||||| ||||||
Sbjct: 368 cgccaatggcgcc 380
>gb|AACV01008547.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008547, whole
genome shotgun sequence
Length = 35849
Score = 65.9 bits (33), Expect = 5e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 33 gcaggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacat 92
|||||||||| |||||| |||| ||||||||||||||| || ||||| | ||||||||
Sbjct: 33115 gcaggagctgatcatgaacagcttcaagaccatcgacggccgtggcgccaacgtgcacat 33174
Query: 93 cgccaacggcgcc 105
|||||| ||||||
Sbjct: 33175 cgccaatggcgcc 33187
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 558 gccaaccatcatcagccagggcaaccgctac 588
||||||||||| |||||||||||||||||||
Sbjct: 34189 gccaaccatcaacagccagggcaaccgctac 34219
>ref|XM_471234.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1419
Score = 65.9 bits (33), Expect = 5e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 33 gcaggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacat 92
|||||||||| |||||| |||| ||||||||||||||| || ||||| | ||||||||
Sbjct: 612 gcaggagctgatcatgaacagcttcaagaccatcgacggccgtggcgccaacgtgcacat 671
Query: 93 cgccaacggcgcc 105
|||||| ||||||
Sbjct: 672 cgccaatggcgcc 684
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 558 gccaaccatcatcagccagggcaaccgctac 588
||||||||||| |||||||||||||||||||
Sbjct: 1137 gccaaccatcaacagccagggcaaccgctac 1167
>ref|NT_107194.1| Oryza sativa (japonica cultivar-group)
Length = 2696338
Score = 65.9 bits (33), Expect = 5e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 33 gcaggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacat 92
|||||||||| |||||| |||| ||||||||||||||| || ||||| | ||||||||
Sbjct: 2470773 gcaggagctgatcatgaacagcttcaagaccatcgacggccgtggcgccaacgtgcacat 2470832
Query: 93 cgccaacggcgcc 105
|||||| ||||||
Sbjct: 2470833 cgccaatggcgcc 2470845
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 558 gccaaccatcatcagccagggcaaccgctac 588
||||||||||| |||||||||||||||||||
Sbjct: 2471847 gccaaccatcaacagccagggcaaccgctac 2471877
>gb|CH401184.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000021
genomic scaffold, whole genome shotgun sequence
Length = 2817894
Score = 65.9 bits (33), Expect = 5e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 33 gcaggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacat 92
|||||||||| |||||| |||| ||||||||||||||| || ||||| | ||||||||
Sbjct: 668886 gcaggagctgatcatgaacagcttcaagaccatcgacggccgtggcgccaacgtgcacat 668945
Query: 93 cgccaacggcgcc 105
|||||| ||||||
Sbjct: 668946 cgccaatggcgcc 668958
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 558 gccaaccatcatcagccagggcaaccgctac 588
||||||||||| |||||||||||||||||||
Sbjct: 669960 gccaaccatcaacagccagggcaaccgctac 669990
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 65.9 bits (33), Expect = 5e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 33 gcaggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacat 92
|||||||||| |||||| |||| ||||||||||||||| || ||||| | ||||||||
Sbjct: 2154791 gcaggagctgatcatgaacagcttcaagaccatcgacggccgtggcgccaacgtgcacat 2154850
Query: 93 cgccaacggcgcc 105
|||||| ||||||
Sbjct: 2154851 cgccaatggcgcc 2154863
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 558 gccaaccatcatcagccagggcaaccgctac 588
||||||||||| |||||||||||||||||||
Sbjct: 2155865 gccaaccatcaacagccagggcaaccgctac 2155895
>emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095E20,
complete sequence
Length = 138572
Score = 65.9 bits (33), Expect = 5e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 33 gcaggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacat 92
|||||||||| |||||| |||| ||||||||||||||| || ||||| | ||||||||
Sbjct: 86825 gcaggagctgatcatgaacagcttcaagaccatcgacggccgtggcgccaacgtgcacat 86884
Query: 93 cgccaacggcgcc 105
|||||| ||||||
Sbjct: 86885 cgccaatggcgcc 86897
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 558 gccaaccatcatcagccagggcaaccgctac 588
||||||||||| |||||||||||||||||||
Sbjct: 87899 gccaaccatcaacagccagggcaaccgctac 87929
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 65.9 bits (33), Expect = 5e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 33 gcaggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacat 92
|||||||||| |||||| |||| ||||||||||||||| || ||||| | ||||||||
Sbjct: 2470923 gcaggagctgatcatgaacagcttcaagaccatcgacggccgtggcgccaacgtgcacat 2470982
Query: 93 cgccaacggcgcc 105
|||||| ||||||
Sbjct: 2470983 cgccaatggcgcc 2470995
Score = 54.0 bits (27), Expect = 2e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 558 gccaaccatcatcagccagggcaaccgctac 588
||||||||||| |||||||||||||||||||
Sbjct: 2471997 gccaaccatcaacagccagggcaaccgctac 2472027
>gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete
sequence
Length = 117157
Score = 58.0 bits (29), Expect = 1e-005
Identities = 106/129 (82%), Gaps = 2/129 (1%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacg 522
|||||||||||||| ||||| | |||| | ||||||| | ||||||||||||||||||
Sbjct: 112333 gtgcagcggatgcctcggtgcaggagggggtacttccacatcgtcaacaacgactacacg 112392
Query: 523 cactggctcatgtacgccattggcggcggcgacgcgcca-accatcatcagccagggcaa 581
||| |||||||||||||| || ||| || ||| ||||||| ||||||||||||
Sbjct: 112393 gcgtgggagatgtacgccattggagggagcg-cgagccccaccatcaacagccagggcaa 112451
Query: 582 ccgctacat 590
|||||||||
Sbjct: 112452 ccgctacat 112460
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 35 aggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgc 80
||||||| ||| ||| |||| |||||||||||||||| ||||||||
Sbjct: 111902 aggagctcctcgtgaacagctacaagaccatcgacggccgcggcgc 111947
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
complete sequence
Length = 179157
Score = 58.0 bits (29), Expect = 1e-005
Identities = 106/129 (82%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacg 522
|||||||||||||| ||||| | |||| | ||||||| | ||||||||||||||||||
Sbjct: 124632 gtgcagcggatgcctcggtgcaggagggggtacttccacatcgtcaacaacgactacacg 124573
Query: 523 cactggctcatgtacgccattggcggcggcgacgcgcca-accatcatcagccagggcaa 581
||| |||||||||||||| || ||| || ||| ||||||| ||||||||||||
Sbjct: 124572 gcgtgggagatgtacgccattggagggagcg-cgagccccaccatcaacagccagggcaa 124514
Query: 582 ccgctacat 590
|||||||||
Sbjct: 124513 ccgctacat 124505
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 35 aggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgc 80
||||||| ||| ||| |||| |||||||||||||||| ||||||||
Sbjct: 125063 aggagctcctcgtgaacagctacaagaccatcgacggccgcggcgc 125018
>gb|AACV01021719.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021719, whole
genome shotgun sequence
Length = 27956
Score = 58.0 bits (29), Expect = 1e-005
Identities = 106/129 (82%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacg 522
|||||||||||||| ||||| | |||| | ||||||| | ||||||||||||||||||
Sbjct: 11406 gtgcagcggatgcctcggtgcaggagggggtacttccacatcgtcaacaacgactacacg 11347
Query: 523 cactggctcatgtacgccattggcggcggcgacgcgcca-accatcatcagccagggcaa 581
||| |||||||||||||| || ||| || ||| ||||||| ||||||||||||
Sbjct: 11346 gcgtgggagatgtacgccattggagggagcg-cgagccccaccatcaacagccagggcaa 11288
Query: 582 ccgctacat 590
|||||||||
Sbjct: 11287 ccgctacat 11279
>ref|NM_196827.1| Oryza sativa (japonica cultivar-group) putative pectate lyase
(OSJNBa0018F16.19), mRNA
Length = 1404
Score = 58.0 bits (29), Expect = 1e-005
Identities = 106/129 (82%), Gaps = 2/129 (1%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacg 522
|||||||||||||| ||||| | |||| | ||||||| | ||||||||||||||||||
Sbjct: 895 gtgcagcggatgcctcggtgcaggagggggtacttccacatcgtcaacaacgactacacg 954
Query: 523 cactggctcatgtacgccattggcggcggcgacgcgcca-accatcatcagccagggcaa 581
||| |||||||||||||| || ||| || ||| ||||||| ||||||||||||
Sbjct: 955 gcgtgggagatgtacgccattggagggagcg-cgagccccaccatcaacagccagggcaa 1013
Query: 582 ccgctacat 590
|||||||||
Sbjct: 1014 ccgctacat 1022
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 35 aggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgc 80
||||||| ||| ||| |||| |||||||||||||||| ||||||||
Sbjct: 464 aggagctcctcgtgaacagctacaagaccatcgacggccgcggcgc 509
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 58.0 bits (29), Expect = 1e-005
Identities = 106/129 (82%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacg 522
|||||||||||||| ||||| | |||| | ||||||| | ||||||||||||||||||
Sbjct: 2977374 gtgcagcggatgcctcggtgcaggagggggtacttccacatcgtcaacaacgactacacg 2977315
Query: 523 cactggctcatgtacgccattggcggcggcgacgcgcca-accatcatcagccagggcaa 581
||| |||||||||||||| || ||| || ||| ||||||| ||||||||||||
Sbjct: 2977314 gcgtgggagatgtacgccattggagggagcg-cgagccccaccatcaacagccagggcaa 2977256
Query: 582 ccgctacat 590
|||||||||
Sbjct: 2977255 ccgctacat 2977247
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 35 aggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgc 80
||||||| ||| ||| |||| |||||||||||||||| ||||||||
Sbjct: 2977805 aggagctcctcgtgaacagctacaagaccatcgacggccgcggcgc 2977760
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 58.0 bits (29), Expect = 1e-005
Identities = 106/129 (82%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacg 522
|||||||||||||| ||||| | |||| | ||||||| | ||||||||||||||||||
Sbjct: 4189302 gtgcagcggatgcctcggtgcaggagggggtacttccacatcgtcaacaacgactacacg 4189243
Query: 523 cactggctcatgtacgccattggcggcggcgacgcgcca-accatcatcagccagggcaa 581
||| |||||||||||||| || ||| || ||| ||||||| ||||||||||||
Sbjct: 4189242 gcgtgggagatgtacgccattggagggagcg-cgagccccaccatcaacagccagggcaa 4189184
Query: 582 ccgctacat 590
|||||||||
Sbjct: 4189183 ccgctacat 4189175
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 58.0 bits (29), Expect = 1e-005
Identities = 106/129 (82%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacg 522
|||||||||||||| ||||| | |||| | ||||||| | ||||||||||||||||||
Sbjct: 15055096 gtgcagcggatgcctcggtgcaggagggggtacttccacatcgtcaacaacgactacacg 15055037
Query: 523 cactggctcatgtacgccattggcggcggcgacgcgcca-accatcatcagccagggcaa 581
||| |||||||||||||| || ||| || ||| ||||||| ||||||||||||
Sbjct: 15055036 gcgtgggagatgtacgccattggagggagcg-cgagccccaccatcaacagccagggcaa 15054978
Query: 582 ccgctacat 590
|||||||||
Sbjct: 15054977 ccgctacat 15054969
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 58.0 bits (29), Expect = 1e-005
Identities = 106/129 (82%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacg 522
|||||||||||||| ||||| | |||| | ||||||| | ||||||||||||||||||
Sbjct: 16245743 gtgcagcggatgcctcggtgcaggagggggtacttccacatcgtcaacaacgactacacg 16245684
Query: 523 cactggctcatgtacgccattggcggcggcgacgcgcca-accatcatcagccagggcaa 581
||| |||||||||||||| || ||| || ||| ||||||| ||||||||||||
Sbjct: 16245683 gcgtgggagatgtacgccattggagggagcg-cgagccccaccatcaacagccagggcaa 16245625
Query: 582 ccgctacat 590
|||||||||
Sbjct: 16245624 ccgctacat 16245616
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 35 aggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgc 80
||||||| ||| ||| |||| |||||||||||||||| ||||||||
Sbjct: 16246174 aggagctcctcgtgaacagctacaagaccatcgacggccgcggcgc 16246129
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 58.0 bits (29), Expect = 1e-005
Identities = 106/129 (82%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacacg 522
|||||||||||||| ||||| | |||| | ||||||| | ||||||||||||||||||
Sbjct: 16253984 gtgcagcggatgcctcggtgcaggagggggtacttccacatcgtcaacaacgactacacg 16253925
Query: 523 cactggctcatgtacgccattggcggcggcgacgcgcca-accatcatcagccagggcaa 581
||| |||||||||||||| || ||| || ||| ||||||| ||||||||||||
Sbjct: 16253924 gcgtgggagatgtacgccattggagggagcg-cgagccccaccatcaacagccagggcaa 16253866
Query: 582 ccgctacat 590
|||||||||
Sbjct: 16253865 ccgctacat 16253857
Score = 52.0 bits (26), Expect = 7e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 35 aggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgc 80
||||||| ||| ||| |||| |||||||||||||||| ||||||||
Sbjct: 16254415 aggagctcctcgtgaacagctacaagaccatcgacggccgcggcgc 16254370
>gb|AU070353.1|AU070353 AU070353 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12346_8A, mRNA sequence
Length = 562
Score = 52.0 bits (26), Expect = 7e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 33 gcaggagctgctcatgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacat 92
|||||||||| |||||| |||| |||||||||| | || || ||||| | ||||||||
Sbjct: 138 gcaggagctgatcatgaacagcttcaagaccatcaanggccgtggcgccaacgtgcacat 197
Query: 93 cgccaacggcgcc 105
|||||| ||||||
Sbjct: 198 cgccaatggcgcc 210
>dbj|AK060609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D03, full
insert sequence
Length = 955
Score = 46.1 bits (23), Expect = 0.043
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 558 gccaaccatcatcagccagggcaaccgctac 588
||||||||||| ||||| |||||||||||||
Sbjct: 32 gccaaccatcaacagccggggcaaccgctac 62
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,040,141
Number of Sequences: 438736
Number of extensions: 2040141
Number of successful extensions: 16200
Number of sequences better than 0.5: 67
Number of HSP's better than 0.5 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14951
Number of HSP's gapped (non-prelim): 1218
length of query: 1172
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1151
effective length of database: 2,791,206,460
effective search space: 3212678635460
effective search space used: 3212678635460
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)