BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023663.2.1
(613 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_472685.1| Oryza sativa (japonica cultivar-group), p... 210 7e-052
gb|AACV01003595.1| Oryza sativa (japonica cultivar-group) c... 113 1e-022
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 113 1e-022
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 113 1e-022
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 113 1e-022
emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromoso... 113 1e-022
emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromoso... 113 1e-022
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 113 1e-022
gb|CA999566.1|CA999566 S345P_C03 Rice cold stress germinati... 86 3e-014
dbj|AG023519.1| Oryza sativa (japonica cultivar-group) DNA,... 84 1e-013
dbj|AG208982.1| Oryza sativa (japonica cultivar-group) DNA,... 76 2e-011
dbj|AG207219.1| Oryza sativa (japonica cultivar-group) DNA,... 76 2e-011
dbj|AG022985.1| Oryza sativa (japonica cultivar-group) DNA,... 52 4e-004
emb|BX001060.3|CNS08CE8 Oryza sativa chromosome 12, . BAC O... 42 0.35
gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbar... 42 0.35
emb|AL954157.3|CNS08CCV Oryza sativa chromosome 12, . BAC O... 42 0.35
dbj|AP003743.4| Oryza sativa (japonica cultivar-group) geno... 42 0.35
dbj|AP005124.5| Oryza sativa (japonica cultivar-group) geno... 42 0.35
ref|NT_107157.1| Oryza sativa (japonica cultivar-group) 42 0.35
dbj|AP005562.3| Oryza sativa (japonica cultivar-group) geno... 42 0.35
gb|AACV01015337.1| Oryza sativa (japonica cultivar-group) c... 42 0.35
gb|AACV01024108.1| Oryza sativa (japonica cultivar-group) c... 42 0.35
gb|AACV01026568.1| Oryza sativa (japonica cultivar-group) C... 42 0.35
gb|AACV01027982.1| Oryza sativa (japonica cultivar-group) C... 42 0.35
gb|AACV01030347.1| Oryza sativa (japonica cultivar-group) C... 42 0.35
gb|AACV01030496.1| Oryza sativa (japonica cultivar-group) C... 42 0.35
ref|NT_080063.1| Oryza sativa (japonica cultivar-group) chr... 42 0.35
ref|NT_079857.2| Oryza sativa (japonica cultivar-group) 42 0.35
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 42 0.35
dbj|AP006758.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 42 0.35
gb|CH401886.1| Oryza sativa (japonica cultivar-group) scaff... 42 0.35
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromoso... 42 0.35
emb|AL731644.4|OSJN00287 Oryza sativa genomic DNA, chromoso... 42 0.35
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
>ref|XM_472685.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2763
Score = 210 bits (106), Expect = 7e-052
Identities = 181/206 (87%)
Strand = Plus / Minus
Query: 401 ccaaacatgacagggctcctagttttcctgcgctttgtgattcttccatttgctgtctca 460
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2594 ccaaacatgacggtgctcttagttttcctgcgctttgtgattcttccatttgctgtctca 2535
Query: 461 acttcgtattcagggtgggttacctttctatgtttaggaatatcctgagacactttctct 520
||||| |||||| | || |||||||||||||| |||||||||||||| | ||||||||
Sbjct: 2534 acttcatattcatgatgtgttacctttctatgcttaggaatatcctgggttcctttctct 2475
Query: 521 acctttctcaacatgttcgaaattggtgattgtaaaatcccaggtaagtttacgtccttc 580
|||||||||| |||||| | |||||||||||||| ||| |||| || || || ||||||
Sbjct: 2474 acctttctcagcatgtttgtaattggtgattgtataatgccagatagattaacatccttc 2415
Query: 581 cgattggtctccggacttaccaactg 606
|| |||||||| ||||| ||||||||
Sbjct: 2414 cgtttggtctcaggactaaccaactg 2389
Score = 69.9 bits (35), Expect = 2e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 238 ctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagagaataattc 297
|||| |||| |||||||| || || ||||| |||||||| || |||||||| || |||||
Sbjct: 2763 ctagccaaatgcataaggatcttcggcatatggattcaacgagccctcagaaaacaattc 2704
Query: 298 accaatgtttgcagg 312
|||||||||||||||
Sbjct: 2703 accaatgtttgcagg 2689
>gb|AACV01003595.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003595, whole
genome shotgun sequence
Length = 73751
Score = 113 bits (57), Expect = 1e-022
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 401 ccaaacatgacagggctcctagttttcctgcgctttgtgattcttccatttgctgtctca 460
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 12531 ccaaacatgacggtgctcttagttttcctgcgctttgtgattcttccatttgctgtctca 12590
Query: 461 acttcgtattcagggtgggttacct 485
||||| |||||| | || |||||||
Sbjct: 12591 acttcatattcatgatgtgttacct 12615
Score = 83.8 bits (42), Expect = 1e-013
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 482 acctttctatgtttaggaatatcctgagacactttctctacctttctcaacatgttcgaa 541
||||||||||| |||||||||||||| | |||||||||||||||||| |||||| | |
Sbjct: 12739 acctttctatgcttaggaatatcctgggttcctttctctacctttctcagcatgtttgta 12798
Query: 542 attggtgattgtaaaatcccag 563
||||||||||||| ||| ||||
Sbjct: 12799 attggtgattgtataatgccag 12820
Score = 75.8 bits (38), Expect = 2e-011
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 235 cttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagagaataa 294
||||||| |||| |||||||| || || ||||| |||||||| || |||||||| || ||
Sbjct: 11678 cttctagccaaatgcataaggatcttcggcatatggattcaacgagccctcagaaaacaa 11737
Query: 295 ttcaccaatgtttgcagg 312
||||||||||||||||||
Sbjct: 11738 ttcaccaatgtttgcagg 11755
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 113 bits (57), Expect = 1e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 401 ccaaacatgacagggctcctagttttcctgcgctttgtgattcttccatttgctgtctca 460
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 169352 ccaaacatgacggtgctcttagttttcctgcgctttgtgattcttccatttgctgtctca 169293
Query: 461 acttcgtattcagggtgggttacct 485
||||| |||||| | || |||||||
Sbjct: 169292 acttcatattcatgatgtgttacct 169268
Score = 83.8 bits (42), Expect = 1e-013
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 482 acctttctatgtttaggaatatcctgagacactttctctacctttctcaacatgttcgaa 541
||||||||||| |||||||||||||| | |||||||||||||||||| |||||| | |
Sbjct: 169144 acctttctatgcttaggaatatcctgggttcctttctctacctttctcagcatgtttgta 169085
Query: 542 attggtgattgtaaaatcccag 563
||||||||||||| ||| ||||
Sbjct: 169084 attggtgattgtataatgccag 169063
Score = 75.8 bits (38), Expect = 2e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 235 cttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagagaataa 294
||||||| |||| |||||||| || || ||||| |||||||| || |||||||| || ||
Sbjct: 170205 cttctagccaaatgcataaggatcttcggcatatggattcaacgagccctcagaaaacaa 170146
Query: 295 ttcaccaatgtttgcagg 312
||||||||||||||||||
Sbjct: 170145 ttcaccaatgtttgcagg 170128
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 113 bits (57), Expect = 1e-022
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 401 ccaaacatgacagggctcctagttttcctgcgctttgtgattcttccatttgctgtctca 460
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6218996 ccaaacatgacggtgctcttagttttcctgcgctttgtgattcttccatttgctgtctca 6219055
Query: 461 acttcgtattcagggtgggttacct 485
||||| |||||| | || |||||||
Sbjct: 6219056 acttcatattcatgatgtgttacct 6219080
Score = 83.8 bits (42), Expect = 1e-013
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 482 acctttctatgtttaggaatatcctgagacactttctctacctttctcaacatgttcgaa 541
||||||||||| |||||||||||||| | |||||||||||||||||| |||||| | |
Sbjct: 6219204 acctttctatgcttaggaatatcctgggttcctttctctacctttctcagcatgtttgta 6219263
Query: 542 attggtgattgtaaaatcccag 563
||||||||||||| ||| ||||
Sbjct: 6219264 attggtgattgtataatgccag 6219285
Score = 75.8 bits (38), Expect = 2e-011
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 235 cttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagagaataa 294
||||||| |||| |||||||| || || ||||| |||||||| || |||||||| || ||
Sbjct: 6218143 cttctagccaaatgcataaggatcttcggcatatggattcaacgagccctcagaaaacaa 6218202
Query: 295 ttcaccaatgtttgcagg 312
||||||||||||||||||
Sbjct: 6218203 ttcaccaatgtttgcagg 6218220
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 113 bits (57), Expect = 1e-022
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 401 ccaaacatgacagggctcctagttttcctgcgctttgtgattcttccatttgctgtctca 460
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6218996 ccaaacatgacggtgctcttagttttcctgcgctttgtgattcttccatttgctgtctca 6219055
Query: 461 acttcgtattcagggtgggttacct 485
||||| |||||| | || |||||||
Sbjct: 6219056 acttcatattcatgatgtgttacct 6219080
Score = 83.8 bits (42), Expect = 1e-013
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 482 acctttctatgtttaggaatatcctgagacactttctctacctttctcaacatgttcgaa 541
||||||||||| |||||||||||||| | |||||||||||||||||| |||||| | |
Sbjct: 6219204 acctttctatgcttaggaatatcctgggttcctttctctacctttctcagcatgtttgta 6219263
Query: 542 attggtgattgtaaaatcccag 563
||||||||||||| ||| ||||
Sbjct: 6219264 attggtgattgtataatgccag 6219285
Score = 75.8 bits (38), Expect = 2e-011
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 235 cttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagagaataa 294
||||||| |||| |||||||| || || ||||| |||||||| || |||||||| || ||
Sbjct: 6218143 cttctagccaaatgcataaggatcttcggcatatggattcaacgagccctcagaaaacaa 6218202
Query: 295 ttcaccaatgtttgcagg 312
||||||||||||||||||
Sbjct: 6218203 ttcaccaatgtttgcagg 6218220
>emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027G07,
complete sequence
Length = 179021
Score = 113 bits (57), Expect = 1e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 401 ccaaacatgacagggctcctagttttcctgcgctttgtgattcttccatttgctgtctca 460
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7697 ccaaacatgacggtgctcttagttttcctgcgctttgtgattcttccatttgctgtctca 7638
Query: 461 acttcgtattcagggtgggttacct 485
||||| |||||| | || |||||||
Sbjct: 7637 acttcatattcatgatgtgttacct 7613
Score = 83.8 bits (42), Expect = 1e-013
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 482 acctttctatgtttaggaatatcctgagacactttctctacctttctcaacatgttcgaa 541
||||||||||| |||||||||||||| | |||||||||||||||||| |||||| | |
Sbjct: 7489 acctttctatgcttaggaatatcctgggttcctttctctacctttctcagcatgtttgta 7430
Query: 542 attggtgattgtaaaatcccag 563
||||||||||||| ||| ||||
Sbjct: 7429 attggtgattgtataatgccag 7408
Score = 75.8 bits (38), Expect = 2e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 235 cttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagagaataa 294
||||||| |||| |||||||| || || ||||| |||||||| || |||||||| || ||
Sbjct: 8550 cttctagccaaatgcataaggatcttcggcatatggattcaacgagccctcagaaaacaa 8491
Query: 295 ttcaccaatgtttgcagg 312
||||||||||||||||||
Sbjct: 8490 ttcaccaatgtttgcagg 8473
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
complete sequence
Length = 175698
Score = 113 bits (57), Expect = 1e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 401 ccaaacatgacagggctcctagttttcctgcgctttgtgattcttccatttgctgtctca 460
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 169352 ccaaacatgacggtgctcttagttttcctgcgctttgtgattcttccatttgctgtctca 169293
Query: 461 acttcgtattcagggtgggttacct 485
||||| |||||| | || |||||||
Sbjct: 169292 acttcatattcatgatgtgttacct 169268
Score = 83.8 bits (42), Expect = 1e-013
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 482 acctttctatgtttaggaatatcctgagacactttctctacctttctcaacatgttcgaa 541
||||||||||| |||||||||||||| | |||||||||||||||||| |||||| | |
Sbjct: 169144 acctttctatgcttaggaatatcctgggttcctttctctacctttctcagcatgtttgta 169085
Query: 542 attggtgattgtaaaatcccag 563
||||||||||||| ||| ||||
Sbjct: 169084 attggtgattgtataatgccag 169063
Score = 75.8 bits (38), Expect = 2e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 235 cttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagagaataa 294
||||||| |||| |||||||| || || ||||| |||||||| || |||||||| || ||
Sbjct: 170205 cttctagccaaatgcataaggatcttcggcatatggattcaacgagccctcagaaaacaa 170146
Query: 295 ttcaccaatgtttgcagg 312
||||||||||||||||||
Sbjct: 170145 ttcaccaatgtttgcagg 170128
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 113 bits (57), Expect = 1e-022
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 401 ccaaacatgacagggctcctagttttcctgcgctttgtgattcttccatttgctgtctca 460
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 22565597 ccaaacatgacggtgctcttagttttcctgcgctttgtgattcttccatttgctgtctca 22565538
Query: 461 acttcgtattcagggtgggttacct 485
||||| |||||| | || |||||||
Sbjct: 22565537 acttcatattcatgatgtgttacct 22565513
Score = 83.8 bits (42), Expect = 1e-013
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 482 acctttctatgtttaggaatatcctgagacactttctctacctttctcaacatgttcgaa 541
||||||||||| |||||||||||||| | |||||||||||||||||| |||||| | |
Sbjct: 22565389 acctttctatgcttaggaatatcctgggttcctttctctacctttctcagcatgtttgta 22565330
Query: 542 attggtgattgtaaaatcccag 563
||||||||||||| ||| ||||
Sbjct: 22565329 attggtgattgtataatgccag 22565308
Score = 75.8 bits (38), Expect = 2e-011
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 235 cttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagagaataa 294
||||||| |||| |||||||| || || ||||| |||||||| || |||||||| || ||
Sbjct: 22566450 cttctagccaaatgcataaggatcttcggcatatggattcaacgagccctcagaaaacaa 22566391
Query: 295 ttcaccaatgtttgcagg 312
||||||||||||||||||
Sbjct: 22566390 ttcaccaatgtttgcagg 22566373
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 15844113 cttgcaaaaatgatacttcca 15844133
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 15710825 cttgcaaaaatgatacttcca 15710845
>gb|CA999566.1|CA999566 S345P_C03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 394
Score = 85.7 bits (43), Expect = 3e-014
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 230 gtgagcttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagag 289
|||||||||||| |||| |||||||| || || ||||| |||||||| || ||||||||
Sbjct: 121 gtgagcttctagccaaatgcataaggatcttcggcatatggattcaacgagccctcagaa 62
Query: 290 aataattcaccaatgtttgcagg 312
|| ||||||||||||||||||||
Sbjct: 61 aacaattcaccaatgtttgcagg 39
>dbj|AG023519.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND1011_0_102_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND1011, genomic survey sequence
Length = 344
Score = 83.8 bits (42), Expect = 1e-013
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 404 aacatgacagggctcctagttttcctgcgctttgtgattcttccatttgctgtctcaact 463
|||||||| | |||| |||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 224 aacatgacggtgctcttagtnttcctgcgctttgtgattcntccatttgctgnctcaact 283
Query: 464 tcgtattca 472
| ||||||
Sbjct: 284 ncntattca 292
>dbj|AG208982.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE4527_0_101_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE4527, genomic survey sequence
Length = 757
Score = 75.8 bits (38), Expect = 2e-011
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 235 cttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagagaataa 294
||||||| |||| |||||||| || || ||||| |||||||| || |||||||| || ||
Sbjct: 86 cttctagccaaatgcataaggatcttcggcatatggattcaacgagccctcagaaaacaa 145
Query: 295 ttcaccaatgtttgcagg 312
||||||||||||||||||
Sbjct: 146 ttcaccaatgtttgcagg 163
>dbj|AG207219.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE8012_0_101_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE8012, genomic survey sequence
Length = 568
Score = 75.8 bits (38), Expect = 2e-011
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 235 cttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagagaataa 294
||||||| |||| |||||||| || || ||||| |||||||| || |||||||| || ||
Sbjct: 343 cttctagccaaatgcataaggatcttcggcatatggattcaacgagccctcagaaaacaa 402
Query: 295 ttcaccaatgtttgcagg 312
||||||||||||||||||
Sbjct: 403 ttcaccaatgtttgcagg 420
>dbj|AG022985.1| Oryza sativa (japonica cultivar-group) DNA, clone:NC2657_0_101_1A,
3' flanking sequence of Tos17 insertion in rice strain
NC2657, genomic survey sequence
Length = 467
Score = 52.0 bits (26), Expect = 4e-004
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 235 cttctagtcaaaagcataagggtcgtcagcatacggattcaaggaaccctcagagaataa 294
||||||| |||| || ||||| || || ||||| |||||||| | |||||||| || |
Sbjct: 368 cttctagccaaatgcntaaggntcttcggcatatggattcaacgngccctcagaaaacna 427
Query: 295 ttcaccaatgtttgcagg 312
|||||||||||||||||
Sbjct: 428 gtcaccaatgtttgcagg 445
>emb|BX001060.3|CNS08CE8 Oryza sativa chromosome 12, . BAC OSJNBa0056M17 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 178147
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 94469 cttgcaaaaatgatacttcca 94489
>gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0082N11, from chromosome 10, complete sequence
Length = 183345
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 107230 cttgcaaaaatgatacttcca 107210
>emb|AL954157.3|CNS08CCV Oryza sativa chromosome 12, . BAC OSJNBa0042N11 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 168699
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 147252 cttgcaaaaatgatacttcca 147272
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1118_E12
Length = 119691
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 27291 cttgcaaaaatgatacttcca 27271
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0049I08
Length = 144379
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 112813 cttgcaaaaatgatacttcca 112793
>ref|NT_107157.1| Oryza sativa (japonica cultivar-group)
Length = 959526
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 711991 cttgcaaaaatgatacttcca 711971
>dbj|AP005562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1190_B07
Length = 140200
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 137375 cttgcaaaaatgatacttcca 137395
>gb|AACV01015337.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015337, whole
genome shotgun sequence
Length = 2914
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 1491 cttgcaaaaatgatacttcca 1511
>gb|AACV01024108.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024108,
whole genome shotgun sequence
Length = 6041
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 100 cttgcaaaaatgatacttcca 120
>gb|AACV01026568.1| Oryza sativa (japonica cultivar-group) Ctg026568, whole genome shotgun
sequence
Length = 12284
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 11592 cttgcaaaaatgatacttcca 11612
>gb|AACV01027982.1| Oryza sativa (japonica cultivar-group) Ctg027982, whole genome
shotgun sequence
Length = 1373
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 108 cttgcaaaaatgatacttcca 128
>gb|AACV01030347.1| Oryza sativa (japonica cultivar-group) Ctg030347, whole genome
shotgun sequence
Length = 3680
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 3572 cttgcaaaaatgatacttcca 3552
>gb|AACV01030496.1| Oryza sativa (japonica cultivar-group) Ctg030496, whole genome
shotgun sequence
Length = 3590
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 1788 cttgcaaaaatgatacttcca 1768
>ref|NT_080063.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 327885
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 107230 cttgcaaaaatgatacttcca 107210
>ref|NT_079857.2| Oryza sativa (japonica cultivar-group)
Length = 1332137
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 533054 cttgcaaaaatgatacttcca 533074
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 399777 cttgcaaaaatgatacttcca 399797
>ref|NT_107079.1| Oryza sativa (japonica cultivar-group)
Length = 5472939
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 3488178 cttgcaaaaatgatacttcca 3488198
>dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0663H05
Length = 161938
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 24371 cttgcaaaaatgatacttcca 24391
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 5027196 cttgcaaaaatgatacttcca 5027176
>gb|CH401886.1| Oryza sativa (japonica cultivar-group) scaffold001523 genomic
scaffold, whole genome shotgun sequence
Length = 6561
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 4606 cttgcaaaaatgatacttcca 4626
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 4275561 cttgcaaaaatgatacttcca 4275541
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 2143922 cttgcaaaaatgatacttcca 2143902
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 4275561 cttgcaaaaatgatacttcca 4275541
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 4960671 cttgcaaaaatgatacttcca 4960651
>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08,
complete sequence
Length = 130521
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 30678 cttgcaaaaatgatacttcca 30698
>emb|AL731644.4|OSJN00287 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011K22,
complete sequence
Length = 145766
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 40755 cttgcaaaaatgatacttcca 40775
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 5071124 cttgcaaaaatgatacttcca 5071104
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 6292092 cttgcaaaaatgatacttcca 6292112
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 7473366 cttgcaaaaatgatacttcca 7473346
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 4357242 cttgcaaaaatgatacttcca 4357222
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 4357225 cttgcaaaaatgatacttcca 4357205
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206 cttgcaaaaatgatacttcca 226
|||||||||||||||||||||
Sbjct: 7477565 cttgcaaaaatgatacttcca 7477545
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 639,897
Number of Sequences: 438736
Number of extensions: 639897
Number of successful extensions: 11178
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10754
Number of HSP's gapped (non-prelim): 424
length of query: 613
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 592
effective length of database: 2,791,206,460
effective search space: 1652394224320
effective search space used: 1652394224320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)