BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521569.2.1
(887 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK101425.1| Oryza sativa (japonica cultivar-group) cDNA... 710 0.0
dbj|AK103284.1| Oryza sativa (japonica cultivar-group) cDNA... 710 0.0
dbj|AK060584.1| Oryza sativa (japonica cultivar-group) cDNA... 702 0.0
gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic ... 230 1e-057
gb|AACV01007440.1| Oryza sativa (japonica cultivar-group) c... 230 1e-057
ref|NT_079918.2| Oryza sativa (japonica cultivar-group) 230 1e-057
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 230 1e-057
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 230 1e-057
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 230 1e-057
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 230 1e-057
gb|CV723078.1|CV723078 root--02-G22.g1 Rice root lambda pha... 212 2e-052
dbj|AK102183.1| Oryza sativa (japonica cultivar-group) cDNA... 210 1e-051
dbj|AK058915.1| Oryza sativa (japonica cultivar-group) cDNA... 202 2e-049
emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC O... 125 4e-026
emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Parti... 125 4e-026
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 125 4e-026
gb|AACV01025516.1| Oryza sativa (japonica cultivar-group) c... 125 4e-026
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 125 4e-026
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 125 4e-026
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 125 4e-026
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 125 4e-026
dbj|AK058416.1| Oryza sativa (japonica cultivar-group) cDNA... 105 4e-020
gb|AU173356.1|AU173356 AU173356 Rice root Oryza sativa (jap... 62 5e-007
dbj|AK112091.1| Oryza sativa (japonica cultivar-group) cDNA... 62 5e-007
gb|AACV01000373.1| Oryza sativa (japonica cultivar-group) c... 62 5e-007
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
ref|NM_188279.1| Oryza sativa (japonica cultivar-group), p... 62 5e-007
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 62 5e-007
dbj|AP003197.4| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
gb|CG206831.1|CG206831 TOS0452 TAMU Rice Japonica Nipponbar... 46 0.032
gb|CB637613.1|CB637613 OSJNEa04I17.r OSJNEa Oryza sativa (j... 46 0.032
dbj|AK061741.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.032
dbj|AK102603.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.032
dbj|AK102830.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.032
gb|AY423716.1| Oryza sativa (japonica cultivar-group) homeo... 46 0.032
gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11... 46 0.032
gb|AY554037.1| Oryza sativa (japonica cultivar-group) clone... 46 0.032
gb|AACV01021807.1| Oryza sativa (japonica cultivar-group) c... 46 0.032
ref|NM_197030.1| Oryza sativa (japonica cultivar-group) put... 46 0.032
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 46 0.032
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.032
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.032
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.032
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.032
gb|CB654750.1|CB654750 OSJNEc07I06.r OSJNEc Oryza sativa (j... 44 0.13
>dbj|AK101425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038E17, full
insert sequence
Length = 1165
Score = 710 bits (358), Expect = 0.0
Identities = 605/689 (87%)
Strand = Plus / Minus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 1031 ggttctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcg 972
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 912
Query: 319 acacacacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtg 378
|| |||||||| || |||||||| ||||| ||||| ||||| ||||| ||| |||| ||
Sbjct: 911 acgcacacgccgcccgggaggtaggcgaaaccctgctgcatgatcttggggaactctgta 852
Query: 379 cagagcgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagca 438
|| || ||||||| |||||| || |||||||||||||| || ||||||||||||||||||
Sbjct: 851 catagtgccttccggccatcatcatcaaggatcttctcgagcgagatgtcctggagagca 792
Query: 439 atcagcgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagca 498
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 791 atcagcgtcgtctccagcatgtcgaggccggcttggttggcgaaggtgaacacaggagca 732
Query: 499 gccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagca 558
||||||||||| ||||||||||| || || ||||||||||||| ||||||||||||| |
Sbjct: 731 gccttcagggagcagcacatgattgaatcagagtgttgccacattgctttcaaggaagaa 672
Query: 559 tccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaacctgtagctcctg 618
||||||| ||| | ||| ||||| ||||| || |||||||||||||| | |||||||||
Sbjct: 671 tccgtgctttgtgagtctgtgcgaaggagatccgctccagtgtggaatcggtagctcctc 612
Query: 619 ccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttgcttcatttcaagc 678
|| ||||||||||| ||||| || ||||||||||||||||||| | ||| |||||| |
Sbjct: 611 ccaatccaccttgcaagcgtatgggcctcaggagatcctggagggttctttgtttcaatc 552
Query: 679 tgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccgatgccaccacg 738
|||||||||| || |||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 551 tgtccaccaagacgtgaaggagctattgccatggccactctctgcactgatgccaccacg 492
Query: 739 gtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgattttcatatgag 798
|||| ||| || ||||||||||| || || ||||| || || ||||| ||||||||||||
Sbjct: 491 gtccggacatactgcctggccattgccgctacgctttcacgaaggtggttttcatatgag 432
Query: 799 aactggaaagcaatggtcagcactgatcttgtgttgcaggtgctnnanncgtcactcgaa 858
|| |||||||| |||||||| || |||||||||||||||||||| | |||||| |||
Sbjct: 431 aattggaaagctatggtcaggaccgatcttgtgttgcaggtgctcgaggtgtcactagaa 372
Query: 859 gcacgcgttgtccnaccagatccaacctc 887
|| || || |||| ||| |||||||||||
Sbjct: 371 gcccgtgtagtcccacccgatccaacctc 343
>dbj|AK103284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124M18, full
insert sequence
Length = 3082
Score = 710 bits (358), Expect = 0.0
Identities = 605/689 (87%)
Strand = Plus / Minus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 2930 ggttctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcg 2871
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2870 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 2811
Query: 319 acacacacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtg 378
|| |||||||| || |||||||| ||||| ||||| ||||| ||||| ||| |||| ||
Sbjct: 2810 acgcacacgccgcccgggaggtaggcgaaaccctgctgcatgatcttggggaactctgta 2751
Query: 379 cagagcgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagca 438
|| || ||||||| |||||| || |||||||||||||| || ||||||||||||||||||
Sbjct: 2750 catagtgccttccggccatcatcatcaaggatcttctcgagcgagatgtcctggagagca 2691
Query: 439 atcagcgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagca 498
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 2690 atcagcgtcgtctccagcatgtcgaggccggcttggttggcgaaggtgaacacaggagca 2631
Query: 499 gccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagca 558
||||||||||| ||||||||||| || || ||||||||||||| ||||||||||||| |
Sbjct: 2630 gccttcagggagcagcacatgattgaatcagagtgttgccacattgctttcaaggaagaa 2571
Query: 559 tccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaacctgtagctcctg 618
||||||| ||| | ||| ||||| ||||| || |||||||||||||| | |||||||||
Sbjct: 2570 tccgtgctttgtgagtctgtgcgaaggagatccgctccagtgtggaatcggtagctcctc 2511
Query: 619 ccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttgcttcatttcaagc 678
|| ||||||||||| ||||| || ||||||||||||||||||| | ||| |||||| |
Sbjct: 2510 ccaatccaccttgcaagcgtatgggcctcaggagatcctggagggttctttgtttcaatc 2451
Query: 679 tgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccgatgccaccacg 738
|||||||||| || |||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 2450 tgtccaccaagacgtgaaggagctattgccatggccactctctgcactgatgccaccacg 2391
Query: 739 gtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgattttcatatgag 798
|||| ||| || ||||||||||| || || ||||| || || ||||| ||||||||||||
Sbjct: 2390 gtccggacatactgcctggccattgccgctacgctttcacgaaggtggttttcatatgag 2331
Query: 799 aactggaaagcaatggtcagcactgatcttgtgttgcaggtgctnnanncgtcactcgaa 858
|| |||||||| |||||||| || |||||||||||||||||||| | |||||| |||
Sbjct: 2330 aattggaaagctatggtcaggaccgatcttgtgttgcaggtgctcgaggtgtcactagaa 2271
Query: 859 gcacgcgttgtccnaccagatccaacctc 887
|| || || |||| ||| |||||||||||
Sbjct: 2270 gcccgtgtagtcccacccgatccaacctc 2242
>dbj|AK060584.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H08, full
insert sequence
Length = 1875
Score = 702 bits (354), Expect = 0.0
Identities = 604/689 (87%)
Strand = Plus / Minus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 1716 ggttctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcg 1657
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1656 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 1597
Query: 319 acacacacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtg 378
|| |||||||| || |||||||| ||||| ||||| ||||| ||||| ||| |||| ||
Sbjct: 1596 acgcacacgccgcccgggaggtaggcgaaaccctgctgcatgatcttggggaactctgta 1537
Query: 379 cagagcgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagca 438
|| || ||||||| |||||| || |||||||||||||| || ||||||||||||||||||
Sbjct: 1536 catagtgccttccggccatcatcatcaaggatcttctcgagcgagatgtcctggagagca 1477
Query: 439 atcagcgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagca 498
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 1476 atcagcgtcgtctccagcatgtcgaggccggcttggttggcgaaggtgaacacaggagca 1417
Query: 499 gccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagca 558
||||||||||| ||||||||||| || || ||||||||||||| ||||||||||||| |
Sbjct: 1416 gccttcagggagcagcacatgattgaatcagagtgttgccacattgctttcaaggaagaa 1357
Query: 559 tccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaacctgtagctcctg 618
||||||| ||| | ||| ||||| ||||| || |||||||||||||| | |||||||||
Sbjct: 1356 tccgtgctttgtgagtctgtgcgaaggagatccgctccagtgtggaatcggtagctcctc 1297
Query: 619 ccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttgcttcatttcaagc 678
|| ||||||||||| ||||| || ||||||||||||||||||| | ||| |||||| |
Sbjct: 1296 ccaatccaccttgcaagcgtatgggcctcaggagatcctggagggttctttgtttcaatc 1237
Query: 679 tgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccgatgccaccacg 738
|||||||||| || |||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 1236 tgtccaccaagacgtgaaggagctattgccatggccactctctgcactgatgccaccacg 1177
Query: 739 gtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgattttcatatgag 798
|||| ||| || ||||||||||| || || ||||| || || ||||| ||||||||||||
Sbjct: 1176 gtccggacatactgcctggccattgccgctacgctttcacgaaggtggttttcatatgag 1117
Query: 799 aactggaaagcaatggtcagcactgatcttgtgttgcaggtgctnnanncgtcactcgaa 858
|| |||||||| |||||||| || ||||||||||||||||| || | |||||| |||
Sbjct: 1116 aattggaaagctatggtcaggaccgatcttgtgttgcaggtactcgaggtgtcactagaa 1057
Query: 859 gcacgcgttgtccnaccagatccaacctc 887
|| || || |||| ||| |||||||||||
Sbjct: 1056 gcccgtgtagtcccacccgatccaacctc 1028
>gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic sequence, complete sequence
Length = 175704
Score = 230 bits (116), Expect = 1e-057
Identities = 237/279 (84%)
Strand = Plus / Minus
Query: 609 gtagctcctgccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttgctt 668
||||||||| || ||||||||||| ||||| || ||||||||||||||||||| | |||
Sbjct: 95612 gtagctcctcccaatccaccttgcaagcgtatgggcctcaggagatcctggagggttctt 95553
Query: 669 catttcaagctgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccga 728
|||||| ||||||||||| || |||||||||||||||||||| || |||||||| ||
Sbjct: 95552 tgtttcaatctgtccaccaagacgtgaaggagctattgccatggccactctctgcactga 95493
Query: 729 tgccaccacggtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgatt 788
|||||||||||||| ||| || ||||||||||| || || ||||| || || ||||| ||
Sbjct: 95492 tgccaccacggtccggacatactgcctggccattgccgctacgctttcacgaaggtggtt 95433
Query: 789 ttcatatgagaactggaaagcaatggtcagcactgatcttgtgttgcaggtgctnnannc 848
|||||||||||| |||||||| |||||||| || |||||||||||||||||||| |
Sbjct: 95432 ttcatatgagaattggaaagctatggtcaggaccgatcttgtgttgcaggtgctcgaggt 95373
Query: 849 gtcactcgaagcacgcgttgtccnaccagatccaacctc 887
|||||| ||||| || || |||| ||| |||||||||||
Sbjct: 95372 gtcactagaagcccgtgtagtcccacccgatccaacctc 95334
Score = 228 bits (115), Expect = 4e-057
Identities = 145/155 (93%)
Strand = Plus / Minus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 96411 ggttctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcg 96352
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96351 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 96292
Query: 319 acacacacgccaccggggaggtacgcgaagccctg 353
|| |||||||| || |||||||| ||||| |||||
Sbjct: 96291 acgcacacgccgcccgggaggtaggcgaaaccctg 96257
Score = 176 bits (89), Expect = 1e-041
Identities = 137/153 (89%)
Strand = Plus / Minus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| || || || ||||||| |||||| || |||||||
Sbjct: 96169 cctgctgcatgatcttggggaactctgtacatagtgccttccggccatcatcatcaagga 96110
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 96109 tcttctcgagcgagatgtcctggagagcaatcagcgtcgtctccagcatgtcgaggccgg 96050
Query: 470 cttggttggcaaaggtgaacacgggagcagcct 502
|||||||||| ||||||||||| ||||||||||
Sbjct: 96049 cttggttggcgaaggtgaacacaggagcagcct 96017
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Minus
Query: 500 ccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcat 559
|||||||||| ||||||||||| || || ||||||||||||| ||||||||||||| ||
Sbjct: 95922 ccttcagggagcagcacatgattgaatcagagtgttgccacattgctttcaaggaagaat 95863
Query: 560 ccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaa 605
|||||| ||| | ||| ||||| ||||| || ||||||||||||||
Sbjct: 95862 ccgtgctttgtgagtctgtgcgaaggagatccgctccagtgtggaa 95817
>gb|AACV01007440.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007440, whole
genome shotgun sequence
Length = 11259
Score = 230 bits (116), Expect = 1e-057
Identities = 237/279 (84%)
Strand = Plus / Minus
Query: 609 gtagctcctgccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttgctt 668
||||||||| || ||||||||||| ||||| || ||||||||||||||||||| | |||
Sbjct: 4337 gtagctcctcccaatccaccttgcaagcgtatgggcctcaggagatcctggagggttctt 4278
Query: 669 catttcaagctgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccga 728
|||||| ||||||||||| || |||||||||||||||||||| || |||||||| ||
Sbjct: 4277 tgtttcaatctgtccaccaagacgtgaaggagctattgccatggccactctctgcactga 4218
Query: 729 tgccaccacggtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgatt 788
|||||||||||||| ||| || ||||||||||| || || ||||| || || ||||| ||
Sbjct: 4217 tgccaccacggtccggacatactgcctggccattgccgctacgctttcacgaaggtggtt 4158
Query: 789 ttcatatgagaactggaaagcaatggtcagcactgatcttgtgttgcaggtgctnnannc 848
|||||||||||| |||||||| |||||||| || |||||||||||||||||||| |
Sbjct: 4157 ttcatatgagaattggaaagctatggtcaggaccgatcttgtgttgcaggtgctcgaggt 4098
Query: 849 gtcactcgaagcacgcgttgtccnaccagatccaacctc 887
|||||| ||||| || || |||| ||| |||||||||||
Sbjct: 4097 gtcactagaagcccgtgtagtcccacccgatccaacctc 4059
Score = 228 bits (115), Expect = 4e-057
Identities = 145/155 (93%)
Strand = Plus / Minus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 5136 ggttctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcg 5077
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5076 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 5017
Query: 319 acacacacgccaccggggaggtacgcgaagccctg 353
|| |||||||| || |||||||| ||||| |||||
Sbjct: 5016 acgcacacgccgcccgggaggtaggcgaaaccctg 4982
Score = 176 bits (89), Expect = 1e-041
Identities = 137/153 (89%)
Strand = Plus / Minus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| || || || ||||||| |||||| || |||||||
Sbjct: 4894 cctgctgcatgatcttggggaactctgtacatagtgccttccggccatcatcatcaagga 4835
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4834 tcttctcgagcgagatgtcctggagagcaatcagcgtcgtctccagcatgtcgaggccgg 4775
Query: 470 cttggttggcaaaggtgaacacgggagcagcct 502
|||||||||| ||||||||||| ||||||||||
Sbjct: 4774 cttggttggcgaaggtgaacacaggagcagcct 4742
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Minus
Query: 500 ccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcat 559
|||||||||| ||||||||||| || || ||||||||||||| ||||||||||||| ||
Sbjct: 4647 ccttcagggagcagcacatgattgaatcagagtgttgccacattgctttcaaggaagaat 4588
Query: 560 ccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaa 605
|||||| ||| | ||| ||||| ||||| || ||||||||||||||
Sbjct: 4587 ccgtgctttgtgagtctgtgcgaaggagatccgctccagtgtggaa 4542
>ref|NT_079918.2| Oryza sativa (japonica cultivar-group)
Length = 553008
Score = 230 bits (116), Expect = 1e-057
Identities = 237/279 (84%)
Strand = Plus / Plus
Query: 609 gtagctcctgccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttgctt 668
||||||||| || ||||||||||| ||||| || ||||||||||||||||||| | |||
Sbjct: 457397 gtagctcctcccaatccaccttgcaagcgtatgggcctcaggagatcctggagggttctt 457456
Query: 669 catttcaagctgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccga 728
|||||| ||||||||||| || |||||||||||||||||||| || |||||||| ||
Sbjct: 457457 tgtttcaatctgtccaccaagacgtgaaggagctattgccatggccactctctgcactga 457516
Query: 729 tgccaccacggtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgatt 788
|||||||||||||| ||| || ||||||||||| || || ||||| || || ||||| ||
Sbjct: 457517 tgccaccacggtccggacatactgcctggccattgccgctacgctttcacgaaggtggtt 457576
Query: 789 ttcatatgagaactggaaagcaatggtcagcactgatcttgtgttgcaggtgctnnannc 848
|||||||||||| |||||||| |||||||| || |||||||||||||||||||| |
Sbjct: 457577 ttcatatgagaattggaaagctatggtcaggaccgatcttgtgttgcaggtgctcgaggt 457636
Query: 849 gtcactcgaagcacgcgttgtccnaccagatccaacctc 887
|||||| ||||| || || |||| ||| |||||||||||
Sbjct: 457637 gtcactagaagcccgtgtagtcccacccgatccaacctc 457675
Score = 228 bits (115), Expect = 4e-057
Identities = 145/155 (93%)
Strand = Plus / Plus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 456598 ggttctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcg 456657
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456658 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 456717
Query: 319 acacacacgccaccggggaggtacgcgaagccctg 353
|| |||||||| || |||||||| ||||| |||||
Sbjct: 456718 acgcacacgccgcccgggaggtaggcgaaaccctg 456752
Score = 176 bits (89), Expect = 1e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| || || || ||||||| |||||| || |||||||
Sbjct: 456840 cctgctgcatgatcttggggaactctgtacatagtgccttccggccatcatcatcaagga 456899
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 456900 tcttctcgagcgagatgtcctggagagcaatcagcgtcgtctccagcatgtcgaggccgg 456959
Query: 470 cttggttggcaaaggtgaacacgggagcagcct 502
|||||||||| ||||||||||| ||||||||||
Sbjct: 456960 cttggttggcgaaggtgaacacaggagcagcct 456992
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 500 ccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcat 559
|||||||||| ||||||||||| || || ||||||||||||| ||||||||||||| ||
Sbjct: 457087 ccttcagggagcagcacatgattgaatcagagtgttgccacattgctttcaaggaagaat 457146
Query: 560 ccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaa 605
|||||| ||| | ||| ||||| ||||| || ||||||||||||||
Sbjct: 457147 ccgtgctttgtgagtctgtgcgaaggagatccgctccagtgtggaa 457192
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 230 bits (116), Expect = 1e-057
Identities = 237/279 (84%)
Strand = Plus / Plus
Query: 609 gtagctcctgccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttgctt 668
||||||||| || ||||||||||| ||||| || ||||||||||||||||||| | |||
Sbjct: 10969472 gtagctcctcccaatccaccttgcaagcgtatgggcctcaggagatcctggagggttctt 10969531
Query: 669 catttcaagctgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccga 728
|||||| ||||||||||| || |||||||||||||||||||| || |||||||| ||
Sbjct: 10969532 tgtttcaatctgtccaccaagacgtgaaggagctattgccatggccactctctgcactga 10969591
Query: 729 tgccaccacggtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgatt 788
|||||||||||||| ||| || ||||||||||| || || ||||| || || ||||| ||
Sbjct: 10969592 tgccaccacggtccggacatactgcctggccattgccgctacgctttcacgaaggtggtt 10969651
Query: 789 ttcatatgagaactggaaagcaatggtcagcactgatcttgtgttgcaggtgctnnannc 848
|||||||||||| |||||||| |||||||| || |||||||||||||||||||| |
Sbjct: 10969652 ttcatatgagaattggaaagctatggtcaggaccgatcttgtgttgcaggtgctcgaggt 10969711
Query: 849 gtcactcgaagcacgcgttgtccnaccagatccaacctc 887
|||||| ||||| || || |||| ||| |||||||||||
Sbjct: 10969712 gtcactagaagcccgtgtagtcccacccgatccaacctc 10969750
Score = 228 bits (115), Expect = 4e-057
Identities = 145/155 (93%)
Strand = Plus / Plus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 10968673 ggttctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcg 10968732
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10968733 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 10968792
Query: 319 acacacacgccaccggggaggtacgcgaagccctg 353
|| |||||||| || |||||||| ||||| |||||
Sbjct: 10968793 acgcacacgccgcccgggaggtaggcgaaaccctg 10968827
Score = 176 bits (89), Expect = 1e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| || || || ||||||| |||||| || |||||||
Sbjct: 10968915 cctgctgcatgatcttggggaactctgtacatagtgccttccggccatcatcatcaagga 10968974
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10968975 tcttctcgagcgagatgtcctggagagcaatcagcgtcgtctccagcatgtcgaggccgg 10969034
Query: 470 cttggttggcaaaggtgaacacgggagcagcct 502
|||||||||| ||||||||||| ||||||||||
Sbjct: 10969035 cttggttggcgaaggtgaacacaggagcagcct 10969067
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 500 ccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcat 559
|||||||||| ||||||||||| || || ||||||||||||| ||||||||||||| ||
Sbjct: 10969162 ccttcagggagcagcacatgattgaatcagagtgttgccacattgctttcaaggaagaat 10969221
Query: 560 ccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaa 605
|||||| ||| | ||| ||||| ||||| || ||||||||||||||
Sbjct: 10969222 ccgtgctttgtgagtctgtgcgaaggagatccgctccagtgtggaa 10969267
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 230 bits (116), Expect = 1e-057
Identities = 237/279 (84%)
Strand = Plus / Plus
Query: 609 gtagctcctgccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttgctt 668
||||||||| || ||||||||||| ||||| || ||||||||||||||||||| | |||
Sbjct: 25020179 gtagctcctcccaatccaccttgcaagcgtatgggcctcaggagatcctggagggttctt 25020238
Query: 669 catttcaagctgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccga 728
|||||| ||||||||||| || |||||||||||||||||||| || |||||||| ||
Sbjct: 25020239 tgtttcaatctgtccaccaagacgtgaaggagctattgccatggccactctctgcactga 25020298
Query: 729 tgccaccacggtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgatt 788
|||||||||||||| ||| || ||||||||||| || || ||||| || || ||||| ||
Sbjct: 25020299 tgccaccacggtccggacatactgcctggccattgccgctacgctttcacgaaggtggtt 25020358
Query: 789 ttcatatgagaactggaaagcaatggtcagcactgatcttgtgttgcaggtgctnnannc 848
|||||||||||| |||||||| |||||||| || |||||||||||||||||||| |
Sbjct: 25020359 ttcatatgagaattggaaagctatggtcaggaccgatcttgtgttgcaggtgctcgaggt 25020418
Query: 849 gtcactcgaagcacgcgttgtccnaccagatccaacctc 887
|||||| ||||| || || |||| ||| |||||||||||
Sbjct: 25020419 gtcactagaagcccgtgtagtcccacccgatccaacctc 25020457
Score = 228 bits (115), Expect = 4e-057
Identities = 145/155 (93%)
Strand = Plus / Plus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 25019380 ggttctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcg 25019439
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25019440 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 25019499
Query: 319 acacacacgccaccggggaggtacgcgaagccctg 353
|| |||||||| || |||||||| ||||| |||||
Sbjct: 25019500 acgcacacgccgcccgggaggtaggcgaaaccctg 25019534
Score = 176 bits (89), Expect = 1e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| || || || ||||||| |||||| || |||||||
Sbjct: 25019622 cctgctgcatgatcttggggaactctgtacatagtgccttccggccatcatcatcaagga 25019681
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 25019682 tcttctcgagcgagatgtcctggagagcaatcagcgtcgtctccagcatgtcgaggccgg 25019741
Query: 470 cttggttggcaaaggtgaacacgggagcagcct 502
|||||||||| ||||||||||| ||||||||||
Sbjct: 25019742 cttggttggcgaaggtgaacacaggagcagcct 25019774
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 500 ccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcat 559
|||||||||| ||||||||||| || || ||||||||||||| ||||||||||||| ||
Sbjct: 25019869 ccttcagggagcagcacatgattgaatcagagtgttgccacattgctttcaaggaagaat 25019928
Query: 560 ccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaa 605
|||||| ||| | ||| ||||| ||||| || ||||||||||||||
Sbjct: 25019929 ccgtgctttgtgagtctgtgcgaaggagatccgctccagtgtggaa 25019974
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 230 bits (116), Expect = 1e-057
Identities = 237/279 (84%)
Strand = Plus / Plus
Query: 609 gtagctcctgccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttgctt 668
||||||||| || ||||||||||| ||||| || ||||||||||||||||||| | |||
Sbjct: 24457717 gtagctcctcccaatccaccttgcaagcgtatgggcctcaggagatcctggagggttctt 24457776
Query: 669 catttcaagctgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccga 728
|||||| ||||||||||| || |||||||||||||||||||| || |||||||| ||
Sbjct: 24457777 tgtttcaatctgtccaccaagacgtgaaggagctattgccatggccactctctgcactga 24457836
Query: 729 tgccaccacggtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgatt 788
|||||||||||||| ||| || ||||||||||| || || ||||| || || ||||| ||
Sbjct: 24457837 tgccaccacggtccggacatactgcctggccattgccgctacgctttcacgaaggtggtt 24457896
Query: 789 ttcatatgagaactggaaagcaatggtcagcactgatcttgtgttgcaggtgctnnannc 848
|||||||||||| |||||||| |||||||| || |||||||||||||||||||| |
Sbjct: 24457897 ttcatatgagaattggaaagctatggtcaggaccgatcttgtgttgcaggtgctcgaggt 24457956
Query: 849 gtcactcgaagcacgcgttgtccnaccagatccaacctc 887
|||||| ||||| || || |||| ||| |||||||||||
Sbjct: 24457957 gtcactagaagcccgtgtagtcccacccgatccaacctc 24457995
Score = 228 bits (115), Expect = 4e-057
Identities = 145/155 (93%)
Strand = Plus / Plus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 24456918 ggttctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcg 24456977
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24456978 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 24457037
Query: 319 acacacacgccaccggggaggtacgcgaagccctg 353
|| |||||||| || |||||||| ||||| |||||
Sbjct: 24457038 acgcacacgccgcccgggaggtaggcgaaaccctg 24457072
Score = 176 bits (89), Expect = 1e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| || || || ||||||| |||||| || |||||||
Sbjct: 24457160 cctgctgcatgatcttggggaactctgtacatagtgccttccggccatcatcatcaagga 24457219
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24457220 tcttctcgagcgagatgtcctggagagcaatcagcgtcgtctccagcatgtcgaggccgg 24457279
Query: 470 cttggttggcaaaggtgaacacgggagcagcct 502
|||||||||| ||||||||||| ||||||||||
Sbjct: 24457280 cttggttggcgaaggtgaacacaggagcagcct 24457312
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 500 ccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcat 559
|||||||||| ||||||||||| || || ||||||||||||| ||||||||||||| ||
Sbjct: 24457407 ccttcagggagcagcacatgattgaatcagagtgttgccacattgctttcaaggaagaat 24457466
Query: 560 ccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaa 605
|||||| ||| | ||| ||||| ||||| || ||||||||||||||
Sbjct: 24457467 ccgtgctttgtgagtctgtgcgaaggagatccgctccagtgtggaa 24457512
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 230 bits (116), Expect = 1e-057
Identities = 237/279 (84%)
Strand = Plus / Plus
Query: 609 gtagctcctgccgatccaccttgccagcgtgtgtgcctcaggagatcctggagtttgctt 668
||||||||| || ||||||||||| ||||| || ||||||||||||||||||| | |||
Sbjct: 24540248 gtagctcctcccaatccaccttgcaagcgtatgggcctcaggagatcctggagggttctt 24540307
Query: 669 catttcaagctgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccga 728
|||||| ||||||||||| || |||||||||||||||||||| || |||||||| ||
Sbjct: 24540308 tgtttcaatctgtccaccaagacgtgaaggagctattgccatggccactctctgcactga 24540367
Query: 729 tgccaccacggtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgatt 788
|||||||||||||| ||| || ||||||||||| || || ||||| || || ||||| ||
Sbjct: 24540368 tgccaccacggtccggacatactgcctggccattgccgctacgctttcacgaaggtggtt 24540427
Query: 789 ttcatatgagaactggaaagcaatggtcagcactgatcttgtgttgcaggtgctnnannc 848
|||||||||||| |||||||| |||||||| || |||||||||||||||||||| |
Sbjct: 24540428 ttcatatgagaattggaaagctatggtcaggaccgatcttgtgttgcaggtgctcgaggt 24540487
Query: 849 gtcactcgaagcacgcgttgtccnaccagatccaacctc 887
|||||| ||||| || || |||| ||| |||||||||||
Sbjct: 24540488 gtcactagaagcccgtgtagtcccacccgatccaacctc 24540526
Score = 228 bits (115), Expect = 4e-057
Identities = 145/155 (93%)
Strand = Plus / Plus
Query: 199 ggttctcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcg 258
|||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 24539449 ggttctcagacgaatgaccagttgacgaacatgaaggcgaggcagtgcggcgtgtcgtcg 24539508
Query: 259 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24539509 tcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 24539568
Query: 319 acacacacgccaccggggaggtacgcgaagccctg 353
|| |||||||| || |||||||| ||||| |||||
Sbjct: 24539569 acgcacacgccgcccgggaggtaggcgaaaccctg 24539603
Score = 176 bits (89), Expect = 1e-041
Identities = 137/153 (89%)
Strand = Plus / Plus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| || || || ||||||| |||||| || |||||||
Sbjct: 24539691 cctgctgcatgatcttggggaactctgtacatagtgccttccggccatcatcatcaagga 24539750
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24539751 tcttctcgagcgagatgtcctggagagcaatcagcgtcgtctccagcatgtcgaggccgg 24539810
Query: 470 cttggttggcaaaggtgaacacgggagcagcct 502
|||||||||| ||||||||||| ||||||||||
Sbjct: 24539811 cttggttggcgaaggtgaacacaggagcagcct 24539843
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 500 ccttcagggaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcat 559
|||||||||| ||||||||||| || || ||||||||||||| ||||||||||||| ||
Sbjct: 24539938 ccttcagggagcagcacatgattgaatcagagtgttgccacattgctttcaaggaagaat 24539997
Query: 560 ccgtgcattgggtgtccgtgcggaggagttcggctccagtgtggaa 605
|||||| ||| | ||| ||||| ||||| || ||||||||||||||
Sbjct: 24539998 ccgtgctttgtgagtctgtgcgaaggagatccgctccagtgtggaa 24540043
>gb|CV723078.1|CV723078 root--02-G22.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-G22, mRNA sequence
Length = 206
Score = 212 bits (107), Expect = 2e-052
Identities = 152/167 (91%)
Strand = Plus / Minus
Query: 421 gagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccggcttggttggca 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gagatgtcctggagagcaatcagcgtcgtctccagcatgtcgaggccggcttggttggcg 146
Query: 481 aaggtgaacacgggagcagccttcagggaacagcacatgatcgagtccgagtgttgccac 540
||||||||||| ||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct: 145 aaggtgaacacaggagcagccttcagggagcagcacatgattgaatcagagtgttgccac 86
Query: 541 agcgctttcaaggaagcatccgtgcattgggtgtccgtgcggaggag 587
| ||||||||||||| |||||||| ||| | ||| ||||| |||||
Sbjct: 85 attgctttcaaggaagaatccgtgctttgtgagtctgtgcgaaggag 39
>dbj|AK102183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086M14, full
insert sequence
Length = 3140
Score = 210 bits (106), Expect = 1e-051
Identities = 262/314 (83%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgct 263
||||| ||||| |||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 2840 tcacatgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgct 2781
Query: 264 caggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacaca 323
|| ||||||||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct: 2780 aagaaccttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgca 2721
Query: 324 cacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagag 383
||||| || ||||| || | ||| ||||| ||||| ||||| ||| |||| | ||| ||
Sbjct: 2720 gacgcctccagggagataggtgaaaccctgctgcatgatcttggggaactccgagcacag 2661
Query: 384 cgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcag 443
|||||||| ||| ||||| || |||||| |||| || |||||||||||||| | |||
Sbjct: 2660 cgccttccggccctcgtcatccaggatcatctcgagcgagatgtcctggaggttgaccag 2601
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagcagcctt 503
||||||||| || ||||| |||||||| | |||||| |||||||||| ||||||| |||
Sbjct: 2600 cgtcgtctcaaggatgtcgaggccggcattgttggcgaaggtgaacataggagcaggctt 2541
Query: 504 cagggaacagcaca 517
||| ||||||||||
Sbjct: 2540 cagagaacagcaca 2527
Score = 83.8 bits (42), Expect = 1e-013
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
|||||||||||||||| || ||||||||||| ||||||| ||| | ||||| || |
Sbjct: 2350 gaaggagctattgccacagccaccctctgcacggatgccatcacagctctgacataactc 2291
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatg 813
|| ||||| || || |||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 2290 ctagccattgccgccacgctctcacgaaggtggttctcgtatgagaattggaaagcaatg 2231
Query: 814 gtcagcactgatct 827
||||| ||||||||
Sbjct: 2230 gtcaggactgatct 2217
>dbj|AK058915.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-A07, full
insert sequence
Length = 1011
Score = 202 bits (102), Expect = 2e-049
Identities = 261/314 (83%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgct 263
||||| ||||| |||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 762 tcacatgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgct 703
Query: 264 caggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacaca 323
|| ||||||||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct: 702 aagaaccttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgacttgca 643
Query: 324 cacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagag 383
||||| || ||||| || | ||| ||||| ||||| ||||| ||| |||| | ||| ||
Sbjct: 642 gacgcctccagggagataggtgaaaccctgctgcatgatcttggggaactccgagcacag 583
Query: 384 cgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcag 443
|| ||||| ||| ||||| || |||||| |||| || |||||||||||||| | |||
Sbjct: 582 cgtcttccggccctcgtcatccaggatcatctcgagcgagatgtcctggaggttgaccag 523
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagcagcctt 503
||||||||| || ||||| |||||||| | |||||| |||||||||| ||||||| |||
Sbjct: 522 cgtcgtctcaaggatgtcgaggccggcattgttggcgaaggtgaacataggagcaggctt 463
Query: 504 cagggaacagcaca 517
||| ||||||||||
Sbjct: 462 cagagaacagcaca 449
Score = 75.8 bits (38), Expect = 4e-011
Identities = 110/134 (82%)
Strand = Plus / Minus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
|||||||||||||||| || ||||||||||| ||||||| ||| | ||||| || |
Sbjct: 272 gaaggagctattgccacagccaccctctgcacggatgccatcacagctctgacataactc 213
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatg 813
| ||||| || || |||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 212 ttagccattgccgccacgctctcacgaaggtggttctcgtatgagaattggaaagcaatg 153
Query: 814 gtcagcactgatct 827
||||| ||||||||
Sbjct: 152 gtcaggactgatct 139
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 161806
Score = 125 bits (63), Expect = 4e-026
Identities = 102/115 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgct 263
||||| ||||| |||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 157163 tcacatgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgct 157104
Query: 264 caggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
|| ||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 157103 aagaaccttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgac 157049
Score = 83.8 bits (42), Expect = 1e-013
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| | ||| |||||||||| ||| ||||| || ||||
Sbjct: 156901 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 156842
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
|| |||| || |||||||||||||| | |||||||||||| || ||||| |||||||
Sbjct: 156841 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 156782
Query: 470 cttggttggcaaaggtgaacacgggagcag 499
| | |||||| |||||||||| |||||||
Sbjct: 156781 cattgttggcgaaggtgaacataggagcag 156752
Score = 83.8 bits (42), Expect = 1e-013
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
|||||||||||||||| || ||||||||||| ||||||| ||| | ||||| || |
Sbjct: 156335 gaaggagctattgccacagccaccctctgcacggatgccatcacagctctgacataactc 156276
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatg 813
|| ||||| || || |||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 156275 ctagccattgccgccacgctctcacgaaggtggttctcgtatgagaattggaaagcaatg 156216
Query: 814 gtcagcactgatct 827
||||| ||||||||
Sbjct: 156215 gtcaggactgatct 156202
>emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial sequence from BAC OJ1257_B09 of
library Monsanto from chromosome 12 of cultivar Nipponbare
of ssp. japonica of Oryza sativa (rice), complete sequence
Length = 61296
Score = 125 bits (63), Expect = 4e-026
Identities = 102/115 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgct 263
||||| ||||| |||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 20783 tcacatgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgct 20724
Query: 264 caggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
|| ||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 20723 aagaaccttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgac 20669
Score = 83.8 bits (42), Expect = 1e-013
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| | ||| |||||||||| ||| ||||| || ||||
Sbjct: 20521 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 20462
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
|| |||| || |||||||||||||| | |||||||||||| || ||||| |||||||
Sbjct: 20461 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 20402
Query: 470 cttggttggcaaaggtgaacacgggagcag 499
| | |||||| |||||||||| |||||||
Sbjct: 20401 cattgttggcgaaggtgaacataggagcag 20372
Score = 83.8 bits (42), Expect = 1e-013
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
|||||||||||||||| || ||||||||||| ||||||| ||| | ||||| || |
Sbjct: 19955 gaaggagctattgccacagccaccctctgcacggatgccatcacagctctgacataactc 19896
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatg 813
|| ||||| || || |||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 19895 ctagccattgccgccacgctctcacgaaggtggttctcgtatgagaattggaaagcaatg 19836
Query: 814 gtcagcactgatct 827
||||| ||||||||
Sbjct: 19835 gtcaggactgatct 19822
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 125 bits (63), Expect = 4e-026
Identities = 102/115 (88%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgct 263
||||| ||||| |||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 2126104 tcacatgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgct 2126163
Query: 264 caggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
|| ||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 2126164 aagaaccttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgac 2126218
Score = 83.8 bits (42), Expect = 1e-013
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
|||||||||||||||| || ||||||||||| ||||||| ||| | ||||| || |
Sbjct: 2126932 gaaggagctattgccacagccaccctctgcacggatgccatcacagctctgacataactc 2126991
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatg 813
|| ||||| || || |||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 2126992 ctagccattgccgccacgctctcacgaaggtggttctcgtatgagaattggaaagcaatg 2127051
Query: 814 gtcagcactgatct 827
||||| ||||||||
Sbjct: 2127052 gtcaggactgatct 2127065
Score = 83.8 bits (42), Expect = 1e-013
Identities = 123/150 (82%)
Strand = Plus / Plus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| | ||| |||||||||| ||| ||||| || ||||
Sbjct: 2126366 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 2126425
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
|| |||| || |||||||||||||| | |||||||||||| || ||||| |||||||
Sbjct: 2126426 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 2126485
Query: 470 cttggttggcaaaggtgaacacgggagcag 499
| | |||||| |||||||||| |||||||
Sbjct: 2126486 cattgttggcgaaggtgaacataggagcag 2126515
>gb|AACV01025516.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025516, whole
genome shotgun sequence
Length = 38783
Score = 125 bits (63), Expect = 4e-026
Identities = 102/115 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgct 263
||||| ||||| |||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 24846 tcacatgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgct 24787
Query: 264 caggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
|| ||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 24786 aagaaccttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgac 24732
Score = 83.8 bits (42), Expect = 1e-013
Identities = 123/150 (82%)
Strand = Plus / Minus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| | ||| |||||||||| ||| ||||| || ||||
Sbjct: 24584 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 24525
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
|| |||| || |||||||||||||| | |||||||||||| || ||||| |||||||
Sbjct: 24524 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 24465
Query: 470 cttggttggcaaaggtgaacacgggagcag 499
| | |||||| |||||||||| |||||||
Sbjct: 24464 cattgttggcgaaggtgaacataggagcag 24435
Score = 83.8 bits (42), Expect = 1e-013
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
|||||||||||||||| || ||||||||||| ||||||| ||| | ||||| || |
Sbjct: 24018 gaaggagctattgccacagccaccctctgcacggatgccatcacagctctgacataactc 23959
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatg 813
|| ||||| || || |||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 23958 ctagccattgccgccacgctctcacgaaggtggttctcgtatgagaattggaaagcaatg 23899
Query: 814 gtcagcactgatct 827
||||| ||||||||
Sbjct: 23898 gtcaggactgatct 23885
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 125 bits (63), Expect = 4e-026
Identities = 102/115 (88%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgct 263
||||| ||||| |||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 2976821 tcacatgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgct 2976880
Query: 264 caggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
|| ||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 2976881 aagaaccttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgac 2976935
Score = 83.8 bits (42), Expect = 1e-013
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
|||||||||||||||| || ||||||||||| ||||||| ||| | ||||| || |
Sbjct: 2977649 gaaggagctattgccacagccaccctctgcacggatgccatcacagctctgacataactc 2977708
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatg 813
|| ||||| || || |||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 2977709 ctagccattgccgccacgctctcacgaaggtggttctcgtatgagaattggaaagcaatg 2977768
Query: 814 gtcagcactgatct 827
||||| ||||||||
Sbjct: 2977769 gtcaggactgatct 2977782
Score = 83.8 bits (42), Expect = 1e-013
Identities = 123/150 (82%)
Strand = Plus / Plus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| | ||| |||||||||| ||| ||||| || ||||
Sbjct: 2977083 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 2977142
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
|| |||| || |||||||||||||| | |||||||||||| || ||||| |||||||
Sbjct: 2977143 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 2977202
Query: 470 cttggttggcaaaggtgaacacgggagcag 499
| | |||||| |||||||||| |||||||
Sbjct: 2977203 cattgttggcgaaggtgaacataggagcag 2977232
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 125 bits (63), Expect = 4e-026
Identities = 102/115 (88%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgct 263
||||| ||||| |||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 22160467 tcacatgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgct 22160526
Query: 264 caggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
|| ||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 22160527 aagaaccttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgac 22160581
Score = 83.8 bits (42), Expect = 1e-013
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
|||||||||||||||| || ||||||||||| ||||||| ||| | ||||| || |
Sbjct: 22161295 gaaggagctattgccacagccaccctctgcacggatgccatcacagctctgacataactc 22161354
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatg 813
|| ||||| || || |||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 22161355 ctagccattgccgccacgctctcacgaaggtggttctcgtatgagaattggaaagcaatg 22161414
Query: 814 gtcagcactgatct 827
||||| ||||||||
Sbjct: 22161415 gtcaggactgatct 22161428
Score = 83.8 bits (42), Expect = 1e-013
Identities = 123/150 (82%)
Strand = Plus / Plus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| | ||| |||||||||| ||| ||||| || ||||
Sbjct: 22160729 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 22160788
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
|| |||| || |||||||||||||| | |||||||||||| || ||||| |||||||
Sbjct: 22160789 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 22160848
Query: 470 cttggttggcaaaggtgaacacgggagcag 499
| | |||||| |||||||||| |||||||
Sbjct: 22160849 cattgttggcgaaggtgaacataggagcag 22160878
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 125 bits (63), Expect = 4e-026
Identities = 102/115 (88%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgct 263
||||| ||||| |||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 25954506 tcacatgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgct 25954565
Query: 264 caggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
|| ||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 25954566 aagaaccttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgac 25954620
Score = 83.8 bits (42), Expect = 1e-013
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
|||||||||||||||| || ||||||||||| ||||||| ||| | ||||| || |
Sbjct: 25955334 gaaggagctattgccacagccaccctctgcacggatgccatcacagctctgacataactc 25955393
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatg 813
|| ||||| || || |||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 25955394 ctagccattgccgccacgctctcacgaaggtggttctcgtatgagaattggaaagcaatg 25955453
Query: 814 gtcagcactgatct 827
||||| ||||||||
Sbjct: 25955454 gtcaggactgatct 25955467
Score = 83.8 bits (42), Expect = 1e-013
Identities = 123/150 (82%)
Strand = Plus / Plus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| | ||| |||||||||| ||| ||||| || ||||
Sbjct: 25954768 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 25954827
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
|| |||| || |||||||||||||| | |||||||||||| || ||||| |||||||
Sbjct: 25954828 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 25954887
Query: 470 cttggttggcaaaggtgaacacgggagcag 499
| | |||||| |||||||||| |||||||
Sbjct: 25954888 cattgttggcgaaggtgaacataggagcag 25954917
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 125 bits (63), Expect = 4e-026
Identities = 102/115 (88%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgct 263
||||| ||||| |||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 25882684 tcacatgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgct 25882743
Query: 264 caggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
|| ||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct: 25882744 aagaaccttccacgccaccgcctgctcatacgatgcctgccgccccatgctcgac 25882798
Score = 83.8 bits (42), Expect = 1e-013
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
|||||||||||||||| || ||||||||||| ||||||| ||| | ||||| || |
Sbjct: 25883512 gaaggagctattgccacagccaccctctgcacggatgccatcacagctctgacataactc 25883571
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatg 813
|| ||||| || || |||||||| || ||||| || || |||||||| ||||||||||||
Sbjct: 25883572 ctagccattgccgccacgctctcacgaaggtggttctcgtatgagaattggaaagcaatg 25883631
Query: 814 gtcagcactgatct 827
||||| ||||||||
Sbjct: 25883632 gtcaggactgatct 25883645
Score = 83.8 bits (42), Expect = 1e-013
Identities = 123/150 (82%)
Strand = Plus / Plus
Query: 350 cctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtcaagga 409
|||| ||||| ||||| ||| |||| | ||| |||||||||| ||| ||||| || ||||
Sbjct: 25882946 cctgctgcatgatcttggggaactccgagcacagcgccttccggccctcgtcatccagga 25883005
Query: 410 tcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccaggccgg 469
|| |||| || |||||||||||||| | |||||||||||| || ||||| |||||||
Sbjct: 25883006 tcatctcgagcgagatgtcctggaggttgaccagcgtcgtctcaaggatgtcgaggccgg 25883065
Query: 470 cttggttggcaaaggtgaacacgggagcag 499
| | |||||| |||||||||| |||||||
Sbjct: 25883066 cattgttggcgaaggtgaacataggagcag 25883095
>dbj|AK058416.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D03, full
insert sequence
Length = 375
Score = 105 bits (53), Expect = 4e-020
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgct 263
||||| ||||| |||||| |||| ||||||||| ||||||||||| | ||||||||||||
Sbjct: 94 tcacatgaaggtccagttgacgagcatgaaggcgaggcagtgcggcgcgtcgtcgtcgct 35
Query: 264 caggaccttccacgccaccgcctgctcgtacga 296
|| ||||||||||||||||||||||| |||||
Sbjct: 34 aagaaccttccacgccaccgcctgctcatacga 2
>gb|AU173356.1|AU173356 AU173356 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2413, mRNA sequence
Length = 449
Score = 61.9 bits (31), Expect = 5e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacac 326
||||||||||||||||||| |||||||||| ||| || ||| | ||||||||| |||||
Sbjct: 189 accttccacgccaccgccttctcgtacgacgccgccctcccaacgctcgacacgcacac 131
>dbj|AK112091.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A01, full
insert sequence
Length = 1429
Score = 61.9 bits (31), Expect = 5e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacac 326
||||||||||||||||||| |||||||||| ||| || ||| | ||||||||| |||||
Sbjct: 1231 accttccacgccaccgccttctcgtacgacgccgccctcccaacgctcgacacgcacac 1173
>gb|AACV01000373.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000373,
whole genome shotgun sequence
Length = 1487
Score = 61.9 bits (31), Expect = 5e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacac 326
||||||||||||||||||| |||||||||| ||| || ||| | ||||||||| |||||
Sbjct: 235 accttccacgccaccgccttctcgtacgacgccgccctcccaacgctcgacacgcacac 177
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 61.9 bits (31), Expect = 5e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacac 326
||||||||||||||||||| |||||||||| ||| || ||| | ||||||||| |||||
Sbjct: 5423562 accttccacgccaccgccttctcgtacgacgccgccctcccaacgctcgacacgcacac 5423620
>ref|NM_188279.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2697
Score = 61.9 bits (31), Expect = 5e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacac 326
||||||||||||||||||| |||||||||| ||| || ||| | ||||||||| |||||
Sbjct: 2630 accttccacgccaccgccttctcgtacgacgccgccctcccaacgctcgacacgcacac 2572
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 61.9 bits (31), Expect = 5e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacac 326
||||||||||||||||||| |||||||||| ||| || ||| | ||||||||| |||||
Sbjct: 5423402 accttccacgccaccgccttctcgtacgacgccgccctcccaacgctcgacacgcacac 5423460
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1015E06
Length = 164583
Score = 61.9 bits (31), Expect = 5e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacac 326
||||||||||||||||||| |||||||||| ||| || ||| | ||||||||| |||||
Sbjct: 22620 accttccacgccaccgccttctcgtacgacgccgccctcccaacgctcgacacgcacac 22678
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 61.9 bits (31), Expect = 5e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacac 326
||||||||||||||||||| |||||||||| ||| || ||| | ||||||||| |||||
Sbjct: 5424482 accttccacgccaccgccttctcgtacgacgccgccctcccaacgctcgacacgcacac 5424540
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 61.9 bits (31), Expect = 5e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacac 326
||||||||||||||||||| |||||||||| ||| || ||| | ||||||||| |||||
Sbjct: 5424482 accttccacgccaccgccttctcgtacgacgccgccctcccaacgctcgacacgcacac 5424540
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 61.9 bits (31), Expect = 5e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacac 326
||||||||||||||||||| |||||||||| ||| || ||| | ||||||||| |||||
Sbjct: 5425780 accttccacgccaccgccttctcgtacgacgccgccctcccaacgctcgacacgcacac 5425838
>gb|CG206831.1|CG206831 TOS0452 TAMU Rice Japonica Nipponbare BAC Library (Hind III) Oryza
sativa (japonica cultivar-group) genomic clone
TOSJNBh018O04h, DNA sequence
Length = 643
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 497 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 455
>gb|CB637613.1|CB637613 OSJNEa04I17.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa04I17 3', mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 317 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 359
>dbj|AK061741.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E12, full
insert sequence
Length = 1481
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 1213 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 1171
>dbj|AK102603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098N12, full
insert sequence
Length = 3227
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 2875 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 2833
>dbj|AK102830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109G06, full
insert sequence
Length = 3000
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 2651 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 2609
>gb|AY423716.1| Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper
protein Hox9 mRNA, complete cds
Length = 3174
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 2804 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 2762
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete
sequence
Length = 178692
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 97451 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 97493
>gb|AY554037.1| Oryza sativa (japonica cultivar-group) clone S10307 Hox9 (hox9)
mRNA, partial cds
Length = 562
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 201 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 159
>gb|AACV01021807.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021807, whole
genome shotgun sequence
Length = 45064
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 28168 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 28210
>ref|NM_197030.1| Oryza sativa (japonica cultivar-group) putative homeodomain leucine
zipper protein (OSJNBa0093B11.11), mRNA
Length = 2523
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 2523 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 2481
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 4309611 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 4309569
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 5523252 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 5523210
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 16389046 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 16389004
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 17577180 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 17577138
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 46.1 bits (23), Expect = 0.032
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgc 246
|||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 17586220 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgc 17586178
>gb|CB654750.1|CB654750 OSJNEc07I06.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07I06 3', mRNA sequence
Length = 766
Score = 44.1 bits (22), Expect = 0.13
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 268 accttccacgccaccgcctgctcgtacgac 297
||||||||||||||||||| |||| |||||
Sbjct: 130 accttccacgccaccgccttctcggacgac 159
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 968,506
Number of Sequences: 438736
Number of extensions: 968506
Number of successful extensions: 5545
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5301
Number of HSP's gapped (non-prelim): 225
length of query: 887
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 866
effective length of database: 2,791,206,460
effective search space: 2417184794360
effective search space used: 2417184794360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)