BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448720.2.1
(510 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_480151.1| Oryza sativa (japonica cultivar-group), mRNA 125 2e-026
dbj|AP003940.3| Oryza sativa (japonica cultivar-group) geno... 115 2e-023
dbj|AP005467.3| Oryza sativa (japonica cultivar-group) geno... 115 2e-023
gb|AACV01017284.1| Oryza sativa (japonica cultivar-group) c... 115 2e-023
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 115 2e-023
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 115 2e-023
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 115 2e-023
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 115 2e-023
dbj|AG024984.1| Oryza sativa (japonica cultivar-group) DNA,... 113 9e-023
>ref|XM_480151.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1803
Score = 125 bits (63), Expect = 2e-026
Identities = 180/219 (82%)
Strand = Plus / Plus
Query: 1 cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
|||| ||||||||||||||||| ||||| |||||||||| || | || | |||||||
Sbjct: 1514 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 1573
Query: 61 actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 1574 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 1633
Query: 121 ccgagatggtcgtcccggacaatgccctctactgtggtctactgaaggagaggcaaaagc 180
| || ||| || | || || ||||| | ||||||||||||||||| || ||||||||
Sbjct: 1634 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaaagacttgcaaaagc 1693
Query: 181 cacaggttcatgagtcgaacagcaagtcgtcggcgcaag 219
||||| |||| || ||||||||||| ||||| ||||
Sbjct: 1694 cacagattcaccaggtaaacagcaagtcatcggctcaag 1732
>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1066_B03
Length = 115339
Score = 115 bits (58), Expect = 2e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 1 cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
|||| ||||||||||||||||| ||||| |||||||||| || | || | |||||||
Sbjct: 74004 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 73945
Query: 61 actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 73944 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 73885
Query: 121 ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
| || ||| || | || || ||||| | |||||||||||||||||
Sbjct: 73884 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 73839
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1349_D05
Length = 174478
Score = 115 bits (58), Expect = 2e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 1 cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
|||| ||||||||||||||||| ||||| |||||||||| || | || | |||||||
Sbjct: 165243 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 165184
Query: 61 actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 165183 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 165124
Query: 121 ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
| || ||| || | || || ||||| | |||||||||||||||||
Sbjct: 165123 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 165078
>gb|AACV01017284.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017284, whole
genome shotgun sequence
Length = 44346
Score = 115 bits (58), Expect = 2e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 1 cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
|||| ||||||||||||||||| ||||| |||||||||| || | || | |||||||
Sbjct: 29207 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 29148
Query: 61 actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 29147 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 29088
Query: 121 ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
| || ||| || | || || ||||| | |||||||||||||||||
Sbjct: 29087 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 29042
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 115 bits (58), Expect = 2e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 1 cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
|||| ||||||||||||||||| ||||| |||||||||| || | || | |||||||
Sbjct: 2882046 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 2881987
Query: 61 actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 2881986 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 2881927
Query: 121 ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
| || ||| || | || || ||||| | |||||||||||||||||
Sbjct: 2881926 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 2881881
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 115 bits (58), Expect = 2e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 1 cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
|||| ||||||||||||||||| ||||| |||||||||| || | || | |||||||
Sbjct: 3007363 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 3007304
Query: 61 actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 3007303 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 3007244
Query: 121 ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
| || ||| || | || || ||||| | |||||||||||||||||
Sbjct: 3007243 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 3007198
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 115 bits (58), Expect = 2e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 1 cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
|||| ||||||||||||||||| ||||| |||||||||| || | || | |||||||
Sbjct: 3007363 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 3007304
Query: 61 actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 3007303 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 3007244
Query: 121 ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
| || ||| || | || || ||||| | |||||||||||||||||
Sbjct: 3007243 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 3007198
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 115 bits (58), Expect = 2e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 1 cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
|||| ||||||||||||||||| ||||| |||||||||| || | || | |||||||
Sbjct: 3114520 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 3114461
Query: 61 actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 3114460 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 3114401
Query: 121 ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
| || ||| || | || || ||||| | |||||||||||||||||
Sbjct: 3114400 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 3114355
>dbj|AG024984.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04200T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0590, genomic survey sequence
Length = 406
Score = 113 bits (57), Expect = 9e-023
Identities = 135/161 (83%)
Strand = Plus / Plus
Query: 6 ctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatgactgg 65
||||||||||||||||| ||||| |||||||||| || | || | ||||||| |||||
Sbjct: 1 ctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggataactgg 60
Query: 66 tacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatcaccgag 125
|||| |||||||||||||||||||| || || ||||||||||| ||||||||||| ||
Sbjct: 61 tacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatcactgaa 120
Query: 126 atggtcgtcccggacaatgccctctactgtggtctactgaa 166
||| || | || || ||||| | |||||||||||||||||
Sbjct: 121 atgatcatgccagataatgcattgtactgtggtctactgaa 161
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 526,710
Number of Sequences: 438736
Number of extensions: 526710
Number of successful extensions: 10866
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10792
Number of HSP's gapped (non-prelim): 55
length of query: 510
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 489
effective length of database: 2,791,206,460
effective search space: 1364899958940
effective search space used: 1364899958940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)