BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440444.2.1
(237 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK109882.1| Oryza sativa (japonica cultivar-group) cDNA... 117 3e-024
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 117 3e-024
gb|AACV01022886.1| Oryza sativa (japonica cultivar-group) c... 117 3e-024
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 117 3e-024
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 117 3e-024
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 117 3e-024
gb|AC135599.3| Oryza sativa (japonica cultivar-group) chrom... 117 3e-024
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 117 3e-024
ref|NT_107118.1| Oryza sativa (japonica cultivar-group) 78 2e-012
gb|AACV01022860.1| Oryza sativa (japonica cultivar-group) c... 78 2e-012
gb|AC135596.4| Oryza sativa (japonica cultivar-group) chrom... 78 2e-012
dbj|AK070171.1| Oryza sativa (japonica cultivar-group) cDNA... 62 1e-007
gb|AACV01022882.1| Oryza sativa (japonica cultivar-group) c... 62 1e-007
gb|CB666033.1|CB666033 OSJNEd12M01.r OSJNEd Oryza sativa (j... 44 0.032
gb|CB679592.1|CB679592 OSJNEf03E12.r OSJNEf Oryza sativa (j... 44 0.032
dbj|AK058719.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.032
dbj|AK068873.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.032
gb|AC098832.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.032
gb|AACV01020868.1| Oryza sativa (japonica cultivar-group) c... 44 0.032
ref|NT_107222.1| Oryza sativa (japonica cultivar-group) 44 0.032
gb|CH401245.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.032
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.032
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.032
>dbj|AK109882.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D05, full
insert sequence
Length = 2714
Score = 117 bits (59), Expect = 3e-024
Identities = 149/179 (83%)
Strand = Plus / Minus
Query: 9 ctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgatcaccttc 68
|||||||| | ||||| ||||||||||||| | | |||||||| | ||||||||||||
Sbjct: 2390 ctaatctctaactcatccttgtcaaccatgaggtagtgagaccctctgtcgatcaccttc 2331
Query: 69 ctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacctgagctta 128
|||| || ||| |||||| ||| |||| ||| ||||||||||||||||||| ||
Sbjct: 2330 ttgccgtctttccttaccctgctgaagtgctcacatgggctgatgtcaaacctgatgttg 2271
Query: 129 gccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcg 187
||| |||||||| |||||||||||||||||||||| || ||||||||| ||| ||||||
Sbjct: 2270 gccttctcccctaccttgagatgctggctcctgaaaccgatcagctgggttgtcgggcg 2212
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 117 bits (59), Expect = 3e-024
Identities = 149/179 (83%)
Strand = Plus / Minus
Query: 9 ctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgatcaccttc 68
|||||||| | ||||| ||||||||||||| | | |||||||| | ||||||||||||
Sbjct: 66642 ctaatctctaactcatccttgtcaaccatgaggtagtgagaccctctgtcgatcaccttc 66583
Query: 69 ctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacctgagctta 128
|||| || ||| |||||| ||| |||| ||| ||||||||||||||||||| ||
Sbjct: 66582 ttgccgtctttccttaccctgctgaagtgctcacatgggctgatgtcaaacctgatgttg 66523
Query: 129 gccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcg 187
||| |||||||| |||||||||||||||||||||| || ||||||||| ||| ||||||
Sbjct: 66522 gccttctcccctaccttgagatgctggctcctgaaaccgatcagctgggttgtcgggcg 66464
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctg 175
|||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 27516 tctcccctaccttgagatgctggttcctgaacccgatcagctg 27474
>gb|AACV01022886.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022886, whole
genome shotgun sequence
Length = 32627
Score = 117 bits (59), Expect = 3e-024
Identities = 149/179 (83%)
Strand = Plus / Plus
Query: 9 ctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgatcaccttc 68
|||||||| | ||||| ||||||||||||| | | |||||||| | ||||||||||||
Sbjct: 17090 ctaatctctaactcatccttgtcaaccatgaggtagtgagaccctctgtcgatcaccttc 17149
Query: 69 ctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacctgagctta 128
|||| || ||| |||||| ||| |||| ||| ||||||||||||||||||| ||
Sbjct: 17150 ttgccgtctttccttaccctgctgaagtgctcacatgggctgatgtcaaacctgatgttg 17209
Query: 129 gccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcg 187
||| |||||||| |||||||||||||||||||||| || ||||||||| ||| ||||||
Sbjct: 17210 gccttctcccctaccttgagatgctggctcctgaaaccgatcagctgggttgtcgggcg 17268
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 117 bits (59), Expect = 3e-024
Identities = 149/179 (83%)
Strand = Plus / Minus
Query: 9 ctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgatcaccttc 68
|||||||| | ||||| ||||||||||||| | | |||||||| | ||||||||||||
Sbjct: 2026790 ctaatctctaactcatccttgtcaaccatgaggtagtgagaccctctgtcgatcaccttc 2026731
Query: 69 ctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacctgagctta 128
|||| || ||| |||||| ||| |||| ||| ||||||||||||||||||| ||
Sbjct: 2026730 ttgccgtctttccttaccctgctgaagtgctcacatgggctgatgtcaaacctgatgttg 2026671
Query: 129 gccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcg 187
||| |||||||| |||||||||||||||||||||| || ||||||||| ||| ||||||
Sbjct: 2026670 gccttctcccctaccttgagatgctggctcctgaaaccgatcagctgggttgtcgggcg 2026612
Score = 77.8 bits (39), Expect = 2e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcgacctt 192
|||||||| |||||| ||||||||||| |||||| |||||||| || ||||| || ||
Sbjct: 1605657 tctcccctaccttgacatgctggctccggaacccgatcagctgcctcgccggccggccgc 1605716
Query: 193 gtttcgtgtttggccagcggaggaacatgagcaccgagtgctt 235
||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 1605717 cgctcgtggttggccaccggaggtacatgagcaccgagtgctt 1605759
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctg 175
|||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 1985034 tctcccctaccttgagatgctggttcctgaacccgatcagctg 1984992
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 117 bits (59), Expect = 3e-024
Identities = 149/179 (83%)
Strand = Plus / Minus
Query: 9 ctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgatcaccttc 68
|||||||| | ||||| ||||||||||||| | | |||||||| | ||||||||||||
Sbjct: 9881834 ctaatctctaactcatccttgtcaaccatgaggtagtgagaccctctgtcgatcaccttc 9881775
Query: 69 ctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacctgagctta 128
|||| || ||| |||||| ||| |||| ||| ||||||||||||||||||| ||
Sbjct: 9881774 ttgccgtctttccttaccctgctgaagtgctcacatgggctgatgtcaaacctgatgttg 9881715
Query: 129 gccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcg 187
||| |||||||| |||||||||||||||||||||| || ||||||||| ||| ||||||
Sbjct: 9881714 gccttctcccctaccttgagatgctggctcctgaaaccgatcagctgggttgtcgggcg 9881656
Score = 77.8 bits (39), Expect = 2e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcgacctt 192
|||||||| |||||| ||||||||||| |||||| |||||||| || ||||| || ||
Sbjct: 9460701 tctcccctaccttgacatgctggctccggaacccgatcagctgcctcgccggccggccgc 9460760
Query: 193 gtttcgtgtttggccagcggaggaacatgagcaccgagtgctt 235
||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 9460761 cgctcgtggttggccaccggaggtacatgagcaccgagtgctt 9460803
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctg 175
|||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 9840078 tctcccctaccttgagatgctggttcctgaacccgatcagctg 9840036
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 117 bits (59), Expect = 3e-024
Identities = 149/179 (83%)
Strand = Plus / Minus
Query: 9 ctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgatcaccttc 68
|||||||| | ||||| ||||||||||||| | | |||||||| | ||||||||||||
Sbjct: 10877122 ctaatctctaactcatccttgtcaaccatgaggtagtgagaccctctgtcgatcaccttc 10877063
Query: 69 ctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacctgagctta 128
|||| || ||| |||||| ||| |||| ||| ||||||||||||||||||| ||
Sbjct: 10877062 ttgccgtctttccttaccctgctgaagtgctcacatgggctgatgtcaaacctgatgttg 10877003
Query: 129 gccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcg 187
||| |||||||| |||||||||||||||||||||| || ||||||||| ||| ||||||
Sbjct: 10877002 gccttctcccctaccttgagatgctggctcctgaaaccgatcagctgggttgtcgggcg 10876944
Score = 77.8 bits (39), Expect = 2e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcgacctt 192
|||||||| |||||| ||||||||||| |||||| |||||||| || ||||| || ||
Sbjct: 10474756 tctcccctaccttgacatgctggctccggaacccgatcagctgcctcgccggccggccgc 10474815
Query: 193 gtttcgtgtttggccagcggaggaacatgagcaccgagtgctt 235
||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 10474816 cgctcgtggttggccaccggaggtacatgagcaccgagtgctt 10474858
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctg 175
|||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 10837996 tctcccctaccttgagatgctggttcctgaacccgatcagctg 10837954
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0045P14, complete sequence
Length = 121894
Score = 117 bits (59), Expect = 3e-024
Identities = 149/179 (83%)
Strand = Plus / Minus
Query: 9 ctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgatcaccttc 68
|||||||| | ||||| ||||||||||||| | | |||||||| | ||||||||||||
Sbjct: 66642 ctaatctctaactcatccttgtcaaccatgaggtagtgagaccctctgtcgatcaccttc 66583
Query: 69 ctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacctgagctta 128
|||| || ||| |||||| ||| |||| ||| ||||||||||||||||||| ||
Sbjct: 66582 ttgccgtctttccttaccctgctgaagtgctcacatgggctgatgtcaaacctgatgttg 66523
Query: 129 gccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcg 187
||| |||||||| |||||||||||||||||||||| || ||||||||| ||| ||||||
Sbjct: 66522 gccttctcccctaccttgagatgctggctcctgaaaccgatcagctgggttgtcgggcg 66464
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctg 175
|||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 27516 tctcccctaccttgagatgctggttcctgaacccgatcagctg 27474
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 117 bits (59), Expect = 3e-024
Identities = 149/179 (83%)
Strand = Plus / Minus
Query: 9 ctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcgatcaccttc 68
|||||||| | ||||| ||||||||||||| | | |||||||| | ||||||||||||
Sbjct: 10956311 ctaatctctaactcatccttgtcaaccatgaggtagtgagaccctctgtcgatcaccttc 10956252
Query: 69 ctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacctgagctta 128
|||| || ||| |||||| ||| |||| ||| ||||||||||||||||||| ||
Sbjct: 10956251 ttgccgtctttccttaccctgctgaagtgctcacatgggctgatgtcaaacctgatgttg 10956192
Query: 129 gccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcg 187
||| |||||||| |||||||||||||||||||||| || ||||||||| ||| ||||||
Sbjct: 10956191 gccttctcccctaccttgagatgctggctcctgaaaccgatcagctgggttgtcgggcg 10956133
Score = 77.8 bits (39), Expect = 2e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcgacctt 192
|||||||| |||||| ||||||||||| |||||| |||||||| || ||||| || ||
Sbjct: 10546300 tctcccctaccttgacatgctggctccggaacccgatcagctgcctcgccggccggccgc 10546359
Query: 193 gtttcgtgtttggccagcggaggaacatgagcaccgagtgctt 235
||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 10546360 cgctcgtggttggccaccggaggtacatgagcaccgagtgctt 10546402
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctg 175
|||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 10917185 tctcccctaccttgagatgctggttcctgaacccgatcagctg 10917143
>ref|NT_107118.1| Oryza sativa (japonica cultivar-group)
Length = 339677
Score = 77.8 bits (39), Expect = 2e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcgacctt 192
|||||||| |||||| ||||||||||| |||||| |||||||| || ||||| || ||
Sbjct: 98602 tctcccctaccttgacatgctggctccggaacccgatcagctgcctcgccggccggccgc 98661
Query: 193 gtttcgtgtttggccagcggaggaacatgagcaccgagtgctt 235
||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 98662 cgctcgtggttggccaccggaggtacatgagcaccgagtgctt 98704
>gb|AACV01022860.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022860, whole
genome shotgun sequence
Length = 86978
Score = 77.8 bits (39), Expect = 2e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcgacctt 192
|||||||| |||||| ||||||||||| |||||| |||||||| || ||||| || ||
Sbjct: 53858 tctcccctaccttgacatgctggctccggaacccgatcagctgcctcgccggccggccgc 53917
Query: 193 gtttcgtgtttggccagcggaggaacatgagcaccgagtgctt 235
||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 53918 cgctcgtggttggccaccggaggtacatgagcaccgagtgctt 53960
>gb|AC135596.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0032D10 map E20933S, complete sequence
Length = 146118
Score = 77.8 bits (39), Expect = 2e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctggcttgccgggcgacctt 192
|||||||| |||||| ||||||||||| |||||| |||||||| || ||||| || ||
Sbjct: 98602 tctcccctaccttgacatgctggctccggaacccgatcagctgcctcgccggccggccgc 98661
Query: 193 gtttcgtgtttggccagcggaggaacatgagcaccgagtgctt 235
||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 98662 cgctcgtggttggccaccggaggtacatgagcaccgagtgctt 98704
>dbj|AK070171.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041O20, full
insert sequence
Length = 2515
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctg 175
|||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 2249 tctcccctaccttgagatgctggttcctgaacccgatcagctg 2207
>gb|AACV01022882.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022882, whole
genome shotgun sequence
Length = 28515
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 133 tctcccctgccttgagatgctggctcctgaacccaatcagctg 175
|||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 22080 tctcccctaccttgagatgctggttcctgaacccgatcagctg 22122
>gb|CB666033.1|CB666033 OSJNEd12M01.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12M01 3', mRNA sequence
Length = 808
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 115 caaacctgagcttagccgtctc 136
||||||||||||||||||||||
Sbjct: 212 caaacctgagcttagccgtctc 191
>gb|CB679592.1|CB679592 OSJNEf03E12.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03E12 3', mRNA sequence
Length = 874
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 115 caaacctgagcttagccgtctc 136
||||||||||||||||||||||
Sbjct: 219 caaacctgagcttagccgtctc 198
>dbj|AK058719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E07, full
insert sequence
Length = 2082
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 caaacctgagcttagccgtctc 136
||||||||||||||||||||||
Sbjct: 1870 caaacctgagcttagccgtctc 1891
>dbj|AK068873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P17, full
insert sequence
Length = 2059
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 caaacctgagcttagccgtctc 136
||||||||||||||||||||||
Sbjct: 1848 caaacctgagcttagccgtctc 1869
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
complete sequence
Length = 119500
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 caaacctgagcttagccgtctc 136
||||||||||||||||||||||
Sbjct: 75734 caaacctgagcttagccgtctc 75755
>gb|AACV01020868.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020868, whole
genome shotgun sequence
Length = 34936
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 caaacctgagcttagccgtctc 136
||||||||||||||||||||||
Sbjct: 8539 caaacctgagcttagccgtctc 8560
>ref|NT_107222.1| Oryza sativa (japonica cultivar-group)
Length = 1298239
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 caaacctgagcttagccgtctc 136
||||||||||||||||||||||
Sbjct: 75734 caaacctgagcttagccgtctc 75755
>gb|CH401245.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000082
genomic scaffold, whole genome shotgun sequence
Length = 3323203
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 115 caaacctgagcttagccgtctc 136
||||||||||||||||||||||
Sbjct: 332500 caaacctgagcttagccgtctc 332479
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 115 caaacctgagcttagccgtctc 136
||||||||||||||||||||||
Sbjct: 3600951 caaacctgagcttagccgtctc 3600930
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 44.1 bits (22), Expect = 0.032
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 caaacctgagcttagccgtctc 136
||||||||||||||||||||||
Sbjct: 28440810 caaacctgagcttagccgtctc 28440831
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 282,537
Number of Sequences: 438736
Number of extensions: 282537
Number of successful extensions: 5633
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5525
Number of HSP's gapped (non-prelim): 108
length of query: 237
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 217
effective length of database: 2,791,645,196
effective search space: 605787007532
effective search space used: 605787007532
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)