BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL16c05.xg.2.1
(687 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW691296.1|AW691296 NF040A12ST1F1000 Developing stem Med... 74 2e-011
gb|AW690117.1|AW690117 NF028E10ST1F1000 Developing stem Med... 68 1e-009
gb|AW694738.1|AW694738 NF079D10ST1F1089 Developing stem Med... 68 1e-009
gb|BI311137.1|BI311137 EST5312887 GESD Medicago truncatula ... 68 1e-009
gb|BI311325.1|BI311325 EST5313075 GESD Medicago truncatula ... 64 2e-008
gb|BM779044.1|BM779044 EST589619 KV2 Medicago truncatula cD... 64 2e-008
gb|AC165430.2| Medicago truncatula chromosome 2 clone mth2-... 64 2e-008
gb|AC137831.26| Medicago truncatula clone mth2-34o21, compl... 62 7e-008
gb|AC139745.29| Medicago truncatula clone mth2-17d15, WORKI... 62 7e-008
emb|CR328843.1| mte1-58E1RM1 BAC end, cultivar Jemalong A17... 56 4e-006
emb|CR330377.1| mte1-6K1FM1 BAC end, cultivar Jemalong A17 ... 56 4e-006
gb|BQ148302.1|BQ148302 NF065H07FL1F1064 Developing flower M... 56 4e-006
gb|AC148406.12| Medicago truncatula clone mth2-46e9, comple... 56 4e-006
emb|CT025844.1| Medicago truncatula chromosome 5 clone mte1... 56 4e-006
gb|BI311933.1|BI311933 EST5313683 GESD Medicago truncatula ... 54 2e-005
emb|CR296188.1| mte1-12F6RM1 BAC end, cultivar Jemalong A17... 52 6e-005
gb|BI269981.1|BI269981 NF003D12FL1F1102 Developing flower M... 50 2e-004
gb|BI271130.1|BI271130 NF005F07FL1F1063 Developing flower M... 50 2e-004
gb|BI271759.1|BI271759 NF018G03FL1F1023 Developing flower M... 48 0.001
emb|CR333542.1| mte1-63J3RM1 BAC end, cultivar Jemalong A17... 46 0.004
gb|BG448527.1|BG448527 NF036F04RT1F1032 Developing root Med... 46 0.004
gb|AC119413.16| Medicago truncatula clone mth2-19p2, comple... 46 0.004
gb|AC147877.10| Medicago truncatula clone mth2-9b13, comple... 46 0.004
gb|AC157894.3| Medicago truncatula chromosome 7 BAC clone m... 46 0.004
emb|CR954195.2| Medicago truncatula chromosome 5 clone mth2... 46 0.004
gb|BQ147314.1|BQ147314 NF039D02FL1F1025 Developing flower M... 44 0.015
gb|AC146583.25| Medicago truncatula clone mth2-12k10, WORKI... 44 0.015
gb|AJ501056.1|AJ501056 AJ501056 MTAMP Medicago truncatula c... 42 0.061
emb|CR346199.1| mte1-8B13FM1 BAC end, cultivar Jemalong A17... 40 0.24
emb|CR310935.1| mte1-32B18FM1 BAC end, cultivar Jemalong A1... 40 0.24
gb|AW775893.1|AW775893 EST334958 DSIL Medicago truncatula c... 40 0.24
gb|AL373528.1|AL373528 MtBB01D01F1 MtBB Medicago truncatula... 40 0.24
gb|BF519041.1|BF519041 EST456501 DSIL Medicago truncatula c... 40 0.24
gb|BE324639.2|BE324639 NF024C04PL1F1023 Phosphate starved l... 40 0.24
gb|BG457971.1|BG457971 NF037A10PL1F1070 Phosphate starved l... 40 0.24
gb|BI272897.1|BI272897 NF091A12FL1F1088 Developing flower M... 40 0.24
gb|BQ146831.1|BQ146831 NF028G06FL1F1051 Developing flower M... 40 0.24
gb|BQ147051.1|BQ147051 NF032A12FL1F1097 Developing flower M... 40 0.24
gb|BQ147437.1|BQ147437 NF040F09FL1F1078 Developing flower M... 40 0.24
gb|CF067963.1|CF067963 EST668684 MTUS Medicago truncatula c... 40 0.24
gb|CX540018.1|CX540018 s13dNF43H03GS028_463308 Germinating ... 40 0.24
gb|CX540538.1|CX540538 s13dNF50F06GS047_464352 Germinating ... 40 0.24
gb|AC123899.15| Medicago truncatula clone mth2-33n6, comple... 40 0.24
gb|AC121235.20| Medicago truncatula clone mth2-21k24, compl... 40 0.24
gb|AC129092.13| Medicago truncatula clone mth2-17n16, compl... 40 0.24
>gb|AW691296.1|AW691296 NF040A12ST1F1000 Developing stem Medicago truncatula cDNA clone
NF040A12ST 5', mRNA sequence
Length = 657
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 296 tcttgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaa 355
||||| ||||||||||||||||| || || || || ||||| |||||||||||||| |||
Sbjct: 115 tcttgttgctacaagcagaagcttaggaaaggtctatggtcacctgaggaggatgaaaaa 174
Query: 356 ctcatgaatcacataacaaagcatggccatggctgctggagctctgttcccaaactcgct 415
|| ||||||| || || || |||| ||||| || ||||| || ||||| || | ||
Sbjct: 175 cttttgaatcatattactaaatatggtcatggatgttggagttcagttcctaagcaagca 234
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggat 456
|| |||||||| || || ||||| |||||||| ||||||||
Sbjct: 235 ggtcttcaaagatgtggtaagagctgtaggcttaggtggat 275
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 573 tgccagggaggactgataatgagatcaagaatctatggaa 612
|||||||||||||||||||||| || |||||||| |||||
Sbjct: 389 tgccagggaggactgataatgaaataaagaatctttggaa 428
>gb|AW690117.1|AW690117 NF028E10ST1F1000 Developing stem Medicago truncatula cDNA clone
NF028E10ST 5', mRNA sequence
Length = 698
Score = 67.9 bits (34), Expect = 1e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
||||||||||| ||||| |||| ||||||||||| ||||| || |||||||||||||||
Sbjct: 323 tctcaaattgcggcgcaattgccggggaggactgacaatgaaataaagaatctatggaac 382
Query: 614 tc 615
||
Sbjct: 383 tc 384
>gb|AW694738.1|AW694738 NF079D10ST1F1089 Developing stem Medicago truncatula cDNA clone
NF079D10ST 5', mRNA sequence
Length = 661
Score = 67.9 bits (34), Expect = 1e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 554 tctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatggaac 613
||||||||||| ||||| |||| ||||||||||| ||||| || |||||||||||||||
Sbjct: 142 tctcaaattgcggcgcaattgccggggaggactgacaatgaaataaagaatctatggaac 201
Query: 614 tc 615
||
Sbjct: 202 tc 203
>gb|BI311137.1|BI311137 EST5312887 GESD Medicago truncatula cDNA clone pGESD10C23 5' end,
mRNA sequence
Length = 761
Score = 67.9 bits (34), Expect = 1e-009
Identities = 166/210 (79%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||| || |||||||| ||||||||||||||||| | || || || |||||||| ||
Sbjct: 148 atgggaagacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaa 207
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
|| ||||| || || ||||| | || || || ||||| ||||| || |||||||| |||
Sbjct: 208 gaagatgaaaagcttttgaattatatcaccaaacatggtcatggatgttggagctcagtt 267
Query: 404 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 463
|| ||| | ||||| | || ||||| || ||||||||||| |||| |||||||| |||
Sbjct: 268 ccaaaattagctggtttgcagaggtgtgggaagagttgtagattgagatggataaattat 327
Query: 464 ctgaggccagacctcaagagaggggcattc 493
|| ||||| || | |||||||| ||||||
Sbjct: 328 ctaaggcctgatttgaagagaggagcattc 357
>gb|BI311325.1|BI311325 EST5313075 GESD Medicago truncatula cDNA clone pGESD10F11 5' end,
mRNA sequence
Length = 795
Score = 63.9 bits (32), Expect = 2e-008
Identities = 131/164 (79%)
Strand = Plus / Plus
Query: 296 tcttgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaa 355
|||||||||||||||||||| | || || || || ||||| |||||||| ||||||||
Sbjct: 107 tcttgctgctacaagcagaaattaaggaaaggactttggtctcctgaggaagatgagaag 166
Query: 356 ctcatgaatcacataacaaagcatggccatggctgctggagctctgttcccaaactcgct 415
|| ||||| |||| || || ||||| ||||| || ||||| || || |||||||| ||
Sbjct: 167 cttttgaattacattaccaaacatggtcatggatgttggagttcagtccccaaactagca 226
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaa 459
|| | |||||||| || |||||||| ||| | || ||||||||
Sbjct: 227 ggtttgcaaaggtgtgggaagagttgcaggttaagatggataaa 270
>gb|BM779044.1|BM779044 EST589619 KV2 Medicago truncatula cDNA clone pKV2-22M11, mRNA
sequence
Length = 635
Score = 63.9 bits (32), Expect = 2e-008
Identities = 131/164 (79%)
Strand = Plus / Plus
Query: 296 tcttgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaa 355
|||||||||||||||||||| | || || || || ||||| |||||||| ||||||||
Sbjct: 70 tcttgctgctacaagcagaaattaaggaaaggactttggtctcctgaggaagatgagaag 129
Query: 356 ctcatgaatcacataacaaagcatggccatggctgctggagctctgttcccaaactcgct 415
|| ||||| |||| || || ||||| ||||| || ||||| || || |||||||| ||
Sbjct: 130 cttttgaattacattaccaaacatggtcatggatgttggagttcagtccccaaactagca 189
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaa 459
|| | |||||||| || |||||||| ||| | || ||||||||
Sbjct: 190 ggtttgcaaaggtgtgggaagagttgcaggttaagatggataaa 233
>gb|AC165430.2| Medicago truncatula chromosome 2 clone mth2-67a21, *** SEQUENCING IN
PROGRESS ***, 4 ordered pieces
Length = 114251
Score = 63.9 bits (32), Expect = 2e-008
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
|||||| ||||||| || ||||||||||| || |||||||| |||||||| ||||||||
Sbjct: 78976 gggcttgaaaggtgtggtaagagttgtagactaaggtggatgaactatctaaggccagat 79035
Query: 476 ctcaagagaggg 487
|||| ||||||
Sbjct: 79036 gtcaaaagaggg 79047
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 423 aaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 482
||||||| || ||||||||||| || |||||| | |||||||| |||||||| |||| |
Sbjct: 97645 aaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaa 97704
Query: 483 gaggg 487
|||||
Sbjct: 97705 gaggg 97709
>gb|AC137831.26| Medicago truncatula clone mth2-34o21, complete sequence
Length = 117693
Score = 61.9 bits (31), Expect = 7e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 296 tcttgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaa 355
||||| ||||||||||||||||| || || || || ||||| |||||||||||||| |||
Sbjct: 25790 tcttgttgctacaagcagaagcttaggaaaggtctatggtcacctgaggaggatgaaaaa 25849
Query: 356 ctcatgaatca 366
|| |||||||
Sbjct: 25850 cttttgaatca 25860
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 573 tgccagggaggactgataatgagatcaagaatctatggaa 612
|||||||||||||||||||||| || |||||||| |||||
Sbjct: 26369 tgccagggaggactgataatgaaataaagaatctttggaa 26408
>gb|AC139745.29| Medicago truncatula clone mth2-17d15, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 111593
Score = 61.9 bits (31), Expect = 7e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 296 tcttgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaa 355
||||| ||||||||||||||||| || || || || ||||| |||||||||||||| |||
Sbjct: 83778 tcttgttgctacaagcagaagcttaggaaaggtctatggtcacctgaggaggatgaaaaa 83837
Query: 356 ctcatgaatca 366
|| |||||||
Sbjct: 83838 cttttgaatca 83848
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 573 tgccagggaggactgataatgagatcaagaatctatggaa 612
|||||||||||||||||||||| || |||||||| |||||
Sbjct: 84357 tgccagggaggactgataatgaaataaagaatctttggaa 84396
>emb|CR328843.1| mte1-58E1RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 641
Score = 56.0 bits (28), Expect = 4e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 296 tcttgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaa 355
|||||||||||||||||||| | || || || || ||||| |||||||| ||||||||
Sbjct: 481 tcttgctgctacaagcagaaattaaggaaaggactttggtctcctgaggaagatgagaag 540
Query: 356 ctcatgaatcacataacaaagcatggccatggctgctggagctctgttcccaaact 411
|| ||||| |||| || || ||||| ||||| || ||||| || || ||||||||
Sbjct: 541 cttttgaattacattaccaaacatggtcatggatgttggagttcagtccccaaact 596
>emb|CR330377.1| mte1-6K1FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 697
Score = 56.0 bits (28), Expect = 4e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 296 tcttgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaa 355
|||||||||||||||||||| | || || || || ||||| |||||||| ||||||||
Sbjct: 490 tcttgctgctacaagcagaaattaaggaaaggactttggtctcctgaggaagatgagaag 549
Query: 356 ctcatgaatcacataacaaagcatggccatggctgctggagctctgttcccaaact 411
|| ||||| |||| || || ||||| ||||| || ||||| || || ||||||||
Sbjct: 550 cttttgaattacattaccaaacatggtcatggatgttggagttcagtccccaaact 605
>gb|BQ148302.1|BQ148302 NF065H07FL1F1064 Developing flower Medicago truncatula cDNA clone
NF065H07FL 5', mRNA sequence
Length = 679
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 573 tgccagggaggactgataatgagatcaagaatctatggaa 612
|||||||||||||||||||||| || |||||||| |||||
Sbjct: 97 tgccagggaggactgataatgaaataaagaatctttggaa 136
>gb|AC148406.12| Medicago truncatula clone mth2-46e9, complete sequence
Length = 110272
Score = 56.0 bits (28), Expect = 4e-006
Identities = 94/116 (81%)
Strand = Plus / Minus
Query: 296 tcttgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaa 355
|||||||||||||||||||| | || || || || ||||| |||||||| ||||||||
Sbjct: 93245 tcttgctgctacaagcagaaattaaggaaaggactttggtctcctgaggaagatgagaag 93186
Query: 356 ctcatgaatcacataacaaagcatggccatggctgctggagctctgttcccaaact 411
|| ||||| |||| || || ||||| ||||| || ||||| || || ||||||||
Sbjct: 93185 cttttgaattacattaccaaacatggtcatggatgttggagttcagtccccaaact 93130
>emb|CT025844.1| Medicago truncatula chromosome 5 clone mte1-41h18, COMPLETE SEQUENCE
Length = 103321
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaa 459
|||||||||||||| || |||||||||||| |||| ||||||||
Sbjct: 67967 gggcttcaaaggtgtggtaagagttgtaggttgagatggataaa 68010
>gb|BI311933.1|BI311933 EST5313683 GESD Medicago truncatula cDNA clone pGESD15P16 5' end,
mRNA sequence
Length = 606
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 573 tgccagggaggactgataatgagatcaagaatctatggaactc 615
|||| ||||||||||| ||||| || |||||||||||||||||
Sbjct: 13 tgccggggaggactgacaatgaaataaagaatctatggaactc 55
>emb|CR296188.1| mte1-12F6RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 465
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 422 caaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggcc 471
|||||||| |||||||| ||||| |||| |||||||||||| |||||||
Sbjct: 264 caaaggtgtggaaagagctgtagattgagatggataaactatttgaggcc 215
>gb|BI269981.1|BI269981 NF003D12FL1F1102 Developing flower Medicago truncatula cDNA clone
NF003D12FL 5', mRNA sequence
Length = 661
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 423 aaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 482
||||||| || ||||||||||| || |||||| | |||||||| |||||||| |||| |
Sbjct: 237 aaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaa 296
Query: 483 gaggg 487
|||||
Sbjct: 297 gaggg 301
>gb|BI271130.1|BI271130 NF005F07FL1F1063 Developing flower Medicago truncatula cDNA clone
NF005F07FL 5', mRNA sequence
Length = 654
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 423 aaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaaga 482
||||||| || ||||||||||| || |||||| | |||||||| |||||||| |||| |
Sbjct: 137 aaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaa 196
Query: 483 gaggg 487
|||||
Sbjct: 197 gaggg 201
>gb|BI271759.1|BI271759 NF018G03FL1F1023 Developing flower Medicago truncatula cDNA clone
NF018G03FL 5', mRNA sequence
Length = 379
Score = 48.1 bits (24), Expect = 0.001
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 387 gctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttg 441
|||||||||||||||| || ||||| ||||| || || || |||||||||| |||
Sbjct: 194 gctgctggagctctgtaccaaaacttgctggtctgcagagatgcggaaaganttg 248
>emb|CR333542.1| mte1-63J3RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 490
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 422 caaaggtgcggaaagagttgtaggctgaggtggataaactatctgag 468
||||| || |||||||||||||| |||| ||||| |||||||||||
Sbjct: 310 caaagatgtggaaagagttgtagattgagatggatcaactatctgag 264
>gb|BG448527.1|BG448527 NF036F04RT1F1032 Developing root Medicago truncatula cDNA clone
NF036F04RT 5', mRNA sequence
Length = 633
Score = 46.1 bits (23), Expect = 0.004
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 425 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 484
||||| || |||||||||||| | ||||||| ||| ||| ||||||| || ||||||||
Sbjct: 181 aggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctgatatcaagaga 240
Query: 485 ggg 487
|||
Sbjct: 241 ggg 243
>gb|AC119413.16| Medicago truncatula clone mth2-19p2, complete sequence
Length = 113431
Score = 46.1 bits (23), Expect = 0.004
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 425 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 484
||||| || |||||||||||| | ||||||| ||| ||| ||||||| || ||||||||
Sbjct: 22961 aggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctgatatcaagaga 23020
Query: 485 ggg 487
|||
Sbjct: 23021 ggg 23023
>gb|AC147877.10| Medicago truncatula clone mth2-9b13, complete sequence
Length = 122251
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 422 caaaggtgcggaaagagttgtaggctgaggtggataaactatctgag 468
||||| || |||||||||||||| |||| ||||| |||||||||||
Sbjct: 80834 caaagatgtggaaagagttgtagattgagatggatcaactatctgag 80880
>gb|AC157894.3| Medicago truncatula chromosome 7 BAC clone mth2-85d15, complete
sequence
Length = 127331
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 284 atggggaggcattcttgctgctacaagcagaagct 318
||||| || |||||||| |||||||||||||||||
Sbjct: 27199 atgggaagacattcttgttgctacaagcagaagct 27165
Score = 42.1 bits (21), Expect = 0.061
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 425 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 484
||||| || ||||||||||| |||| |||||||| ||||| ||||| || | ||||||
Sbjct: 26950 aggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagaga 26891
Query: 485 ggggcattc 493
|| ||||||
Sbjct: 26890 ggagcattc 26882
>emb|CR954195.2| Medicago truncatula chromosome 5 clone mth2-16p13, COMPLETE SEQUENCE
Length = 116834
Score = 46.1 bits (23), Expect = 0.004
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 425 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 484
||||| || |||||||||||| | ||||||| ||| ||| ||||||| || ||||||||
Sbjct: 66320 aggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctgatatcaagaga 66379
Query: 485 ggg 487
|||
Sbjct: 66380 ggg 66382
>gb|BQ147314.1|BQ147314 NF039D02FL1F1025 Developing flower Medicago truncatula cDNA clone
NF039D02FL 5', mRNA sequence
Length = 595
Score = 44.1 bits (22), Expect = 0.015
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 413 gctgggcttcaaaggtgcggaaagagttgt 442
||||||||||||||||| || |||||||||
Sbjct: 228 gctgggcttcaaaggtgtggtaagagttgt 257
>gb|AC146583.25| Medicago truncatula clone mth2-12k10, WORKING DRAFT SEQUENCE, 3 ordered
pieces
Length = 122434
Score = 44.1 bits (22), Expect = 0.015
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 374 aagcatggccatggctgctggagctctgttccca 407
|||||||| ||| |||||||||||||||| ||||
Sbjct: 113136 aagcatggtcatagctgctggagctctgtcccca 113169
Score = 42.1 bits (21), Expect = 0.061
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 431 ggaaagagttgtaggctgaggtggataaactatctgaggcc 471
||||||||||| || || |||||||| ||||| ||||||||
Sbjct: 114124 ggaaagagttgcagactaaggtggattaactacctgaggcc 114164
>gb|AJ501056.1|AJ501056 AJ501056 MTAMP Medicago truncatula cDNA clone mtgmadc120002c06,
mRNA sequence
Length = 614
Score = 42.1 bits (21), Expect = 0.061
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 431 ggaaagagttgtaggctgaggtgga 455
||||||||||||||||| |||||||
Sbjct: 203 ggaaagagttgtaggctaaggtgga 227
>emb|CR346199.1| mte1-8B13FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 736
Score = 40.1 bits (20), Expect = 0.24
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 430 cggaaagagttgtaggctgaggtggataaactatct 465
|||||||||||| ||||| ||||| ||||||||||
Sbjct: 370 cggaaagagttgcaggcttcggtggctaaactatct 335
>emb|CR310935.1| mte1-32B18FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 497 caagacgaagaagacctcatcatc 520
||||| ||||||||||||||||||
Sbjct: 247 caagatgaagaagacctcatcatc 270
>gb|AW775893.1|AW775893 EST334958 DSIL Medicago truncatula cDNA clone pDSIL-3M20, mRNA
sequence
Length = 730
Score = 40.1 bits (20), Expect = 0.24
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 450 ggtggataaactatctgaggccagacct 477
||||||| |||||||| |||||||||||
Sbjct: 273 ggtggattaactatctcaggccagacct 300
>gb|AL373528.1|AL373528 MtBB01D01F1 MtBB Medicago truncatula cDNA clone MtBB01D01 T3, mRNA
sequence
Length = 468
Score = 40.1 bits (20), Expect = 0.24
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 450 ggtggataaactatctgaggccagacct 477
||||||| |||||||| |||||||||||
Sbjct: 262 ggtggattaactatctcaggccagacct 289
>gb|BF519041.1|BF519041 EST456501 DSIL Medicago truncatula cDNA clone pDSIL-19D23, mRNA
sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.24
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 450 ggtggataaactatctgaggccagacct 477
||||||| |||||||| |||||||||||
Sbjct: 118 ggtggattaactatctcaggccagacct 145
>gb|BE324639.2|BE324639 NF024C04PL1F1023 Phosphate starved leaf Medicago truncatula cDNA
clone NF024C04PL 5', mRNA sequence
Length = 558
Score = 40.1 bits (20), Expect = 0.24
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 430 cggaaagagttgtaggctgaggtggataaactatct 465
|||||||||||| ||||| ||||| ||||||||||
Sbjct: 202 cggaaagagttgcaggcttcggtggctaaactatct 237
>gb|BG457971.1|BG457971 NF037A10PL1F1070 Phosphate starved leaf Medicago truncatula cDNA
clone NF037A10PL 5', mRNA sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.24
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 430 cggaaagagttgtaggctgaggtggataaactatct 465
|||||||||||| ||||| ||||| ||||||||||
Sbjct: 202 cggaaagagttgcaggcttcggtggctaaactatct 237
>gb|BI272897.1|BI272897 NF091A12FL1F1088 Developing flower Medicago truncatula cDNA clone
NF091A12FL 5', mRNA sequence
Length = 688
Score = 40.1 bits (20), Expect = 0.24
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 430 cggaaagagttgtaggctgaggtggataaactatct 465
|||||||||||| ||||| ||||| ||||||||||
Sbjct: 201 cggaaagagttgcaggcttcggtggctaaactatct 236
>gb|BQ146831.1|BQ146831 NF028G06FL1F1051 Developing flower Medicago truncatula cDNA clone
NF028G06FL 5', mRNA sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.24
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 430 cggaaagagttgtaggctgaggtggataaactatct 465
|||||||||||| ||||| ||||| ||||||||||
Sbjct: 199 cggaaagagttgcaggcttcggtggctaaactatct 234
>gb|BQ147051.1|BQ147051 NF032A12FL1F1097 Developing flower Medicago truncatula cDNA clone
NF032A12FL 5', mRNA sequence
Length = 445
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 497 caagacgaagaagacctcatcatc 520
||||| ||||||||||||||||||
Sbjct: 270 caagatgaagaagacctcatcatc 293
>gb|BQ147437.1|BQ147437 NF040F09FL1F1078 Developing flower Medicago truncatula cDNA clone
NF040F09FL 5', mRNA sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.24
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 450 ggtggataaactatctgaggccagacct 477
||||||| |||||||| |||||||||||
Sbjct: 437 ggtggattaactatctcaggccagacct 464
>gb|CF067963.1|CF067963 EST668684 MTUS Medicago truncatula cDNA clone MTUS-2A4, mRNA
sequence
Length = 727
Score = 40.1 bits (20), Expect = 0.24
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 450 ggtggataaactatctgaggccagacct 477
||||||| |||||||| |||||||||||
Sbjct: 255 ggtggattaactatctcaggccagacct 282
>gb|CX540018.1|CX540018 s13dNF43H03GS028_463308 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.24
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 430 cggaaagagttgtaggctgaggtggataaactatct 465
|||||||||||| ||||| ||||| ||||||||||
Sbjct: 193 cggaaagagttgcaggcttcggtggctaaactatct 228
>gb|CX540538.1|CX540538 s13dNF50F06GS047_464352 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 304
Score = 40.1 bits (20), Expect = 0.24
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 430 cggaaagagttgtaggctgaggtggataaactatct 465
|||||||||||| ||||| ||||| ||||||||||
Sbjct: 30 cggaaagagttgcaggcttcggtggctaaactatct 65
>gb|AC123899.15| Medicago truncatula clone mth2-33n6, complete sequence
Length = 127126
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 434 aagagttgtaggctgaggtggataaactatct 465
|||||||||||||| ||||||| ||||||||
Sbjct: 74966 aagagttgtaggcttaggtggaccaactatct 74997
>gb|AC121235.20| Medicago truncatula clone mth2-21k24, complete sequence
Length = 116205
Score = 40.1 bits (20), Expect = 0.24
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 450 ggtggataaactatctgaggccagacct 477
||||||| |||||||| |||||||||||
Sbjct: 101083 ggtggattaactatctcaggccagacct 101110
>gb|AC129092.13| Medicago truncatula clone mth2-17n16, complete sequence
Length = 104281
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 497 caagacgaagaagacctcatcatc 520
||||| ||||||||||||||||||
Sbjct: 59687 caagatgaagaagacctcatcatc 59710
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 129,668
Number of Sequences: 392609
Number of extensions: 129668
Number of successful extensions: 9547
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9435
Number of HSP's gapped (non-prelim): 110
length of query: 687
length of database: 441,732,993
effective HSP length: 19
effective length of query: 668
effective length of database: 434,273,422
effective search space: 290094645896
effective search space used: 290094645896
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)