BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198766.2.1
(1273 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC122726.21| Medicago truncatula clone mth2-23o24, compl... 42 0.11
gb|AC146776.31| Medicago truncatula clone mth2-125i24, WORK... 42 0.11
>gb|AC122726.21| Medicago truncatula clone mth2-23o24, complete sequence
Length = 130999
Score = 42.1 bits (21), Expect = 0.11
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 716 cagaggatgccaaggtgccgctggggcttcttccacgtggtcaacaacgactacacgcac 775
||||||||||||||||| | ||||| ||||| || | || ||||| |||||||| ||
Sbjct: 9639 cagaggatgccaaggtgtagatggggattctttcatattgttaacaatgactacactcat 9698
Query: 776 tggctcatgtacgccat 792
||||| ||||| |||||
Sbjct: 9699 tggcttatgtatgccat 9715
>gb|AC146776.31| Medicago truncatula clone mth2-125i24, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 132037
Score = 42.1 bits (21), Expect = 0.11
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 716 cagaggatgccaaggtgccgctggggcttcttccacgtggtcaacaacgactacacgcac 775
||||||||||||||||| | ||||| ||||| || | || ||||| |||||||| ||
Sbjct: 82825 cagaggatgccaaggtgtagatggggattctttcatattgttaacaatgactacactcat 82766
Query: 776 tggctcatgtacgccat 792
||||| ||||| |||||
Sbjct: 82765 tggcttatgtatgccat 82749
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 150,460
Number of Sequences: 392609
Number of extensions: 150460
Number of successful extensions: 9947
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9941
Number of HSP's gapped (non-prelim): 6
length of query: 1273
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1253
effective length of database: 433,880,813
effective search space: 543652658689
effective search space used: 543652658689
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)