BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594130.2.1
(2756 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI308555.1|BI308555 EST529965 GPOD Medicago truncatula c... 226 8e-057
gb|AC170988.4| Medicago truncatula chromosome 7 clone mth2-... 94 8e-017
gb|CX530044.1|CX530044 s13dNF98E02MJ008_246124 Methyl Jasmo... 68 4e-009
gb|CG935773.1|CG935773 MBEII07TR mth2 Medicago truncatula g... 42 0.25
gb|CG955566.1|CG955566 MBEBB38TR mth2 Medicago truncatula g... 42 0.25
gb|CG975548.1|CG975548 MBEIF36TF mth2 Medicago truncatula g... 42 0.25
emb|CR497562.1| mth2-173J5RM1 BAC end, cultivar Jemalong A1... 42 0.25
emb|CR317136.1| mte1-41B23RM1 BAC end, cultivar Jemalong A1... 42 0.25
>gb|BI308555.1|BI308555 EST529965 GPOD Medicago truncatula cDNA clone pGPOD-7O17 5' end, mRNA
sequence
Length = 689
Score = 226 bits (114), Expect = 8e-057
Identities = 291/350 (83%)
Strand = Plus / Plus
Query: 1754 gttggtgacaagacaattgcattctggttgatggataaggatatgtatgatttcatggct 1813
||||||||||||||| | ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 3 gttggtgacaagacactagcattttggttgatggacaaggatatgtatgacttcatggct 62
Query: 1814 ctggacaggccttcaacgcctcgcatcgatcgtgggatagcattacataaaatgattagg 1873
| ||||| || || || |||| ||||||||||| || |||||||| ||||||||||||
Sbjct: 63 ttagacagaccatctactcctctaatcgatcgtggtattgcattacacaaaatgattagg 122
Query: 1874 cttgtcacaatgggtttaggaggtgaaggctatctaaatttcatgggaaatgagtttggg 1933
||| | || ||||| | || |||||||| ||| ||||||| ||||| ||||| || ||
Sbjct: 123 cttattactatgggccttggtggtgaagggtatttaaattttatggggaatgaattcggc 182
Query: 1934 catcctgaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcatt 1993
|||||||| ||||| ||||||||||| ||| |||| |||||| |||||| | || ||
Sbjct: 183 catcctgagtggatcgattttccaaggggtgatcaacatcttcctaatggcacagtagtt 242
Query: 1994 cctgggaataacaatagctttgataaatgccgccgtagatttgaccttggagatgcagat 2053
|||||||||||||| || | |||||||||| | |||||||||||| | || ||||||||
Sbjct: 243 cctgggaataacaacagttatgataaatgcaggcgtagatttgacttgggtgatgcagaa 302
Query: 2054 tatcttagatatcgtggtatgcaagagtttgaccaggcaatgcagcacct 2103
||||| ||||||| ||| |||||||| ||||| | || |||||||||||
Sbjct: 303 tatctaagatatcatggaatgcaagaatttgatcgagctatgcagcacct 352
>gb|AC170988.4| Medicago truncatula chromosome 7 clone mth2-53m12, *** SEQUENCING IN
PROGRESS ***
Length = 122501
Score = 93.7 bits (47), Expect = 8e-017
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 1322 tcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcgatttgatggggtg 1381
|||||||| ||||||||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct: 103513 tcaaatgctagatggtggctggatgaatataagtttgatgggtttcgatttgatggtgtc 103572
Query: 1382 acctccatgatgtatactcaccatgga 1408
|| || |||||||| ||||| ||||||
Sbjct: 103573 acatcaatgatgtacactcatcatgga 103599
Score = 91.7 bits (46), Expect = 3e-016
Identities = 124/150 (82%)
Strand = Plus / Plus
Query: 1791 aggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtggga 1850
||||||||||||| ||||||||| | ||||| || || || |||| ||||||||||| |
Sbjct: 112937 aggatatgtatgacttcatggctttagacagaccatctactcctctaatcgatcgtggta 112996
Query: 1851 tagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaa 1910
| |||||||| ||||||||||||||| | || ||||| | || |||||||| ||| |||
Sbjct: 112997 ttgcattacacaaaatgattaggcttattactatgggccttggtggtgaagggtatttaa 113056
Query: 1911 atttcatgggaaatgagtttgggcatcctg 1940
|||| ||||| ||||| || || |||||||
Sbjct: 113057 attttatggggaatgaattcggccatcctg 113086
Score = 85.7 bits (43), Expect = 2e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 1439 gagtattttggatttgccactgatgttgatgcagtagtttacctaatgctggtaaacgat 1498
||||||||||| ||||| ||||||||||| || || |||||||| ||||| || || |||
Sbjct: 110729 gagtattttggttttgcaactgatgttgaagctgtggtttacctgatgcttgttaatgat 110788
Query: 1499 cttattcgtgggctttatccagaagctgtatccattggcgaagatgt 1545
|| |||| |||||| ||||| |||||||| || ||||| ||||||||
Sbjct: 110789 ctcattcatgggctctatcctgaagctgtttcaattggtgaagatgt 110835
Score = 73.8 bits (37), Expect = 7e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 1669 aatgggtgacatcgtgcacaccttaacaaatagaaggtggcttgaaaagtgtgtcactta 1728
||||||||| || || ||||| | ||||| ||||||||||| ||||| ||||| |||
Sbjct: 112431 aatgggtgatatagtccacacactgacaaacagaaggtggctagaaaattgtgtggttta 112490
Query: 1729 ttgtgaaagtcatgatcaagctcttgttggtgacaagacaattgcattctggttgatgga 1788
| |||||||||||| ||||| | ||||||||||||||| | ||||| |||||||||||
Sbjct: 112491 tgctgaaagtcatgaccaagccttggttggtgacaagacactagcattttggttgatgga 112550
Query: 1789 taagg 1793
||||
Sbjct: 112551 caagg 112555
Score = 67.9 bits (34), Expect = 4e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 983 attaaaaagcttggatacaatgcagtacagataatggcaatccaggaacactcttattat 1042
|||||||||||||| || ||||| || ||||| ||||| ||||| ||||| ||||| |||
Sbjct: 102154 attaaaaagcttggctataatgctgtccagattatggctatccaagaacattcttactat 102213
Query: 1043 gcaagctttgggta 1056
|| |||||||||||
Sbjct: 102214 gctagctttgggta 102227
Score = 63.9 bits (32), Expect = 7e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 1943 tggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctgggaat 2002
||||| ||||||||||| ||| |||| |||||| |||||| | || |||||||||||
Sbjct: 113225 tggatcgattttccaaggggtgatcaacatcttcctaatggcacagtagttcctgggaat 113284
Query: 2003 aacaatagctttgataaatgccgccgtagatttgac 2038
||||| || | |||||||||| | ||||||||||||
Sbjct: 113285 aacaacagttatgataaatgcaggcgtagatttgac 113320
Score = 63.9 bits (32), Expect = 7e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 1214 gatggcaccgatacacattacttccatggtggtccacgaggccatcattggatgtgggat 1273
||||| |||||| | ||||| |||||| |||| |||| || |||||||||||||||||
Sbjct: 103302 gatggaaccgatgctcattatttccattctggttcacggggttatcattggatgtgggat 103361
Query: 1274 tctcgcctattcaattatgggagttgggaagt 1305
|||||||| || || ||||| || ||||||||
Sbjct: 103362 tctcgcctttttaactatggaagctgggaagt 103393
Score = 52.0 bits (26), Expect = 3e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 897 ggatatatgaatcacatgttggaatgagtagccc 930
|||||||||| ||||||||||||||||||||||
Sbjct: 101591 ggatatatgaggcacatgttggaatgagtagccc 101624
Score = 46.1 bits (23), Expect = 0.016
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 2045 gatgcagattatcttagatatcgtggtatgcaagagtttgaccaggcaatgcagcacct 2103
|||||||| ||||| ||||||| ||| |||||||| ||||| | || |||||||||||
Sbjct: 115661 gatgcagaatatctaagatatcatggaatgcaagaatttgatcgagctatgcagcacct 115719
Score = 42.1 bits (21), Expect = 0.25
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 489 atgaaggtggtttggatgcattttcacgcggttacgaaaag 529
||||||||||| | ||||||||||| || || |||||||||
Sbjct: 96783 atgaaggtggtcttgatgcattttctcgtgggtacgaaaag 96823
>gb|CX530044.1|CX530044 s13dNF98E02MJ008_246124 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 573
Score = 67.9 bits (34), Expect = 4e-009
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 2014 tgataaatgccgccgtagatttgaccttggagatgcagattatcttagatatcgtggtat 2073
|||||||||| | |||||||||||| | || |||||||| ||||| ||||||| ||| ||
Sbjct: 14 tgataaatgcaggcgtagatttgacttgggtgatgcagaatatctaagatatcatggaat 73
Query: 2074 gcaagagtttgaccaggcaatgcagcacct 2103
|||||| ||||| | || |||||||||||
Sbjct: 74 gcaagaatttgatcgagctatgcagcacct 103
>gb|CG935773.1|CG935773 MBEII07TR mth2 Medicago truncatula genomic clone 62A13, DNA sequence
Length = 902
Score = 42.1 bits (21), Expect = 0.25
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 1949 gattttccaagaggtcctcaaagtcttccaaat 1981
||||||||| |||||||||||| ||||||||||
Sbjct: 417 gattttcca-gaggtcctcaaattcttccaaat 386
>gb|CG955566.1|CG955566 MBEBB38TR mth2 Medicago truncatula genomic clone 17G4, DNA sequence
Length = 823
Score = 42.1 bits (21), Expect = 0.25
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 1949 gattttccaagaggtcctcaaagtcttccaaat 1981
||||||||| |||||||||||| ||||||||||
Sbjct: 376 gattttcca-gaggtcctcaaattcttccaaat 345
>gb|CG975548.1|CG975548 MBEIF36TF mth2 Medicago truncatula genomic clone 61E24, DNA sequence
Length = 847
Score = 42.1 bits (21), Expect = 0.25
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 1949 gattttccaagaggtcctcaaagtcttccaaat 1981
||||||||| |||||||||||| ||||||||||
Sbjct: 422 gattttcca-gaggtcctcaaattcttccaaat 391
>emb|CR497562.1| mth2-173J5RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 508
Score = 42.1 bits (21), Expect = 0.25
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 1949 gattttccaagaggtcctcaaagtcttccaaat 1981
||||||||| |||||||||||| ||||||||||
Sbjct: 421 gattttcca-gaggtcctcaaattcttccaaat 390
>emb|CR317136.1| mte1-41B23RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 842
Score = 42.1 bits (21), Expect = 0.25
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 1949 gattttccaagaggtcctcaaagtcttccaaat 1981
||||||||| |||||||||||| ||||||||||
Sbjct: 24 gattttcca-gaggtcctcaaattcttccaaat 55
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 683,774
Number of Sequences: 392609
Number of extensions: 683774
Number of successful extensions: 51001
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 50961
Number of HSP's gapped (non-prelim): 45
length of query: 2756
length of database: 441,732,993
effective HSP length: 21
effective length of query: 2735
effective length of database: 433,488,204
effective search space: 1185590237940
effective search space used: 1185590237940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)