BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485939.2.1
(530 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC145329.35| Medicago truncatula clone mth2-8i21, comple... 46 0.003
gb|AW694738.1|AW694738 NF079D10ST1F1089 Developing stem Med... 42 0.046
>gb|AC145329.35| Medicago truncatula clone mth2-8i21, complete sequence
Length = 123357
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 384 cacttgcctggcaggaccgacaacgaggtcaagaactactggaactc 430
|||||||| ||||| || ||||||||| | || ||||||||||||||
Sbjct: 79601 cacttgccaggcagaacagacaacgagattaaaaactactggaactc 79647
>gb|AW694738.1|AW694738 NF079D10ST1F1089 Developing stem Medicago truncatula cDNA clone
NF079D10ST 5', mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.046
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggatcaactacctt 284
|||||||||||||| |||||||||| ||||||
Sbjct: 24 aagagctgcaggcttaggtggatcaattacctt 56
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 49,154
Number of Sequences: 392609
Number of extensions: 49154
Number of successful extensions: 5061
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5058
Number of HSP's gapped (non-prelim): 3
length of query: 530
length of database: 441,732,993
effective HSP length: 19
effective length of query: 511
effective length of database: 434,273,422
effective search space: 221913718642
effective search space used: 221913718642
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)