BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064D08F020918.3.1
(559 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410090.1|AJ410090 AJ410090 Medicago sativa library (Ka... 32 0.40
gb|DQ122766.1| Medicago sativa clone QB4 hydroxyacylglutath... 32 0.40
gb|CO511953.1|CO511953 s13dSG07A0300021_103806 Glandular tr... 30 1.6
gb|CO512224.1|CO512224 s13dSG03E0100003_113962 Glandular tr... 30 1.6
gb|CO514440.1|CO514440 s13dSG36G0200018_327540 Glandular tr... 30 1.6
gb|CO515037.1|CO515037 s13dSG26G0200020_397579 Glandular tr... 30 1.6
gb|CO515592.1|CO515592 s13dSG47C0600050_418243 Glandular tr... 30 1.6
gb|CB858131.1|CB858131 RX69 Medicago sativa cDNA-AFLP Medic... 28 6.2
gb|CO511740.1|CO511740 s13dSG01E0800067_103380 Glandular tr... 28 6.2
gb|CO511903.1|CO511903 s13dSG05D0300030_103706 Glandular tr... 28 6.2
gb|CO513601.1|CO513601 s13dSG16D0900074_139984 Glandular tr... 28 6.2
gb|CO513642.1|CO513642 s13dSG17A1000069_140066 Glandular tr... 28 6.2
gb|CO514169.1|CO514169 s13dSG70B0600045_157000 Glandular tr... 28 6.2
gb|CO514184.1|CO514184 s13dSG70D0400030_157030 Glandular tr... 28 6.2
gb|CO515690.1|CO515690 s13dSG60F0600059_419529 Glandular tr... 28 6.2
gb|CO516128.1|CO516128 s13dSG65G0100004_445584 Glandular tr... 28 6.2
emb|X68410.1|AMMSK2A A.medicago MSK-2 mRNA for protein kinase 28 6.2
>gb|AJ410090.1|AJ410090 AJ410090 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone L56, mRNA sequence
Length = 407
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 544 aaagaacattggaaga 559
||||||||||||||||
Sbjct: 304 aaagaacattggaaga 289
>gb|DQ122766.1| Medicago sativa clone QB4 hydroxyacylglutathione hydrolase mRNA,
partial cds
Length = 578
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 416 acccagcaataaacaa 431
||||||||||||||||
Sbjct: 487 acccagcaataaacaa 472
>gb|CO511953.1|CO511953 s13dSG07A0300021_103806 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 554
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 219 tcctcacaagaaaat 233
|||||||||||||||
Sbjct: 450 tcctcacaagaaaat 436
>gb|CO512224.1|CO512224 s13dSG03E0100003_113962 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 369
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 545 aagaacattggaaga 559
|||||||||||||||
Sbjct: 159 aagaacattggaaga 173
>gb|CO514440.1|CO514440 s13dSG36G0200018_327540 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 576
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 398 gatggaagtaccttc 412
|||||||||||||||
Sbjct: 345 gatggaagtaccttc 331
>gb|CO515037.1|CO515037 s13dSG26G0200020_397579 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 458
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 398 gatggaagtaccttc 412
|||||||||||||||
Sbjct: 345 gatggaagtaccttc 331
>gb|CO515592.1|CO515592 s13dSG47C0600050_418243 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 583
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 22 ggaatcggagcttct 36
|||||||||||||||
Sbjct: 132 ggaatcggagcttct 146
>gb|CB858131.1|CB858131 RX69 Medicago sativa cDNA-AFLP Medicago sativa cDNA, mRNA sequence
Length = 349
Score = 28.2 bits (14), Expect = 6.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 113 actcaagcaagtcagatg 130
||||||||||||| ||||
Sbjct: 140 actcaagcaagtctgatg 157
>gb|CO511740.1|CO511740 s13dSG01E0800067_103380 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 561
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 agaagagatagagg 214
||||||||||||||
Sbjct: 353 agaagagatagagg 366
>gb|CO511903.1|CO511903 s13dSG05D0300030_103706 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 592
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 287 catcagaggaagat 300
||||||||||||||
Sbjct: 115 catcagaggaagat 102
>gb|CO513601.1|CO513601 s13dSG16D0900074_139984 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 498
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 gagcagagtagtga 68
||||||||||||||
Sbjct: 249 gagcagagtagtga 236
>gb|CO513642.1|CO513642 s13dSG17A1000069_140066 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 436
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 tcctcacaagaaaa 232
||||||||||||||
Sbjct: 197 tcctcacaagaaaa 184
>gb|CO514169.1|CO514169 s13dSG70B0600045_157000 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 511
Score = 28.2 bits (14), Expect = 6.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 498 gtgtaaaatggtcaaaca 515
||||||||||||| ||||
Sbjct: 178 gtgtaaaatggtctaaca 161
>gb|CO514184.1|CO514184 s13dSG70D0400030_157030 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 449
Score = 28.2 bits (14), Expect = 6.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 21 tggaatcggagcttctta 38
||||| ||||||||||||
Sbjct: 179 tggaaccggagcttctta 196
>gb|CO515690.1|CO515690 s13dSG60F0600059_419529 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 535
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 241 aacttcacggagag 254
||||||||||||||
Sbjct: 327 aacttcacggagag 314
>gb|CO516128.1|CO516128 s13dSG65G0100004_445584 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 292
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 509 tcaaacatttccca 522
||||||||||||||
Sbjct: 6 tcaaacatttccca 19
>emb|X68410.1|AMMSK2A A.medicago MSK-2 mRNA for protein kinase
Length = 1543
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 343 tggcgaactattgc 356
||||||||||||||
Sbjct: 849 tggcgaactattgc 862
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1115
Number of Sequences: 7669
Number of extensions: 1115
Number of successful extensions: 323
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 17
length of query: 559
length of database: 3,745,706
effective HSP length: 16
effective length of query: 543
effective length of database: 3,623,002
effective search space: 1967290086
effective search space used: 1967290086
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)