BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635730.2.1
(1031 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF262578.2|BF262578 HV_CEa0004G02f Hordeum vulgare seedl... 94 1e-017
gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachi... 92 4e-017
gb|BF629773.1|BF629773 HVSMEb0013M11f Hordeum vulgare seedl... 90 2e-016
gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. v... 78 6e-013
gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedl... 64 1e-008
gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedl... 64 1e-008
gb|CV053597.1|CV053597 BNEL101a5 Barley EST endosperm libra... 62 4e-008
gb|BQ753632.1|BQ753632 EBan01_SQ004_M23_R anther, yellow st... 60 2e-007
gb|BM443593.2|BM443593 EBro02_SQ005_M21_R root, 3 week, hyd... 58 6e-007
gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachi... 56 2e-006
gb|BQ764651.1|BQ764651 EBca01_SQ004_C14_R carpel, pre-anthe... 56 2e-006
gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. v... 56 2e-006
emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA 56 2e-006
emb|X70879.1|HVMYB1G H.vulgare Myb1 gene 56 2e-006
gb|BG416961.1|BG416961 HVSMEk0015G09f Hordeum vulgare testa... 54 9e-006
gb|BQ471469.1|BQ471469 HV02I08r HV Hordeum vulgare subsp. v... 54 9e-006
gb|CA002506.1|CA002506 HS07L12r HS Hordeum vulgare subsp. v... 54 9e-006
gb|CB882601.1|CB882601 HL02F10w HL Hordeum vulgare subsp. v... 54 9e-006
gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm libra... 54 9e-006
gb|AL507585.1|AL507585 AL507585 Hordeum vulgare Barke devel... 52 4e-005
gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedl... 52 4e-005
gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedl... 52 4e-005
gb|BF064941.1|BF064941 HV_CEb0022A15f Hordeum vulgare seedl... 52 4e-005
gb|BF620286.3|BF620286 HVSMEc0019F08f Hordeum vulgare seedl... 52 4e-005
gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedl... 52 4e-005
gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm libra... 52 4e-005
gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm librar... 52 4e-005
gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm libra... 52 4e-005
gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm librar... 52 4e-005
gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm libra... 52 4e-005
gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm librar... 52 4e-005
gb|CK123590.1|CK123590 BES1824104i24 BES1824 Hordeum vulgar... 52 4e-005
gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgar... 52 4e-005
emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA 52 4e-005
gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. v... 50 1e-004
gb|CV062831.1|CV062831 BNEL83e5 Barley EST endosperm librar... 50 1e-004
gb|AL507948.1|AL507948 AL507948 Hordeum vulgare Barke devel... 48 6e-004
gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedl... 48 6e-004
gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachi... 48 6e-004
gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, sal... 48 6e-004
gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. v... 48 6e-004
gb|CB877704.1|CB877704 HP05O05T HP Hordeum vulgare subsp. v... 48 6e-004
gb|CV063055.1|CV063055 BNEL86b3 Barley EST endosperm librar... 48 6e-004
emb|X70880.1|HVMYB2G H.vulgare Myb2 gene 48 6e-004
emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA 48 6e-004
emb|X70881.1|HVMYB3G H.vulgare myb3 gene 48 6e-004
gb|BG369720.1|BG369720 HVSMEi0025K10f Hordeum vulgare 20 DA... 46 0.002
gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike... 46 0.002
gb|BQ466900.1|BQ466900 HS01O24T HS Hordeum vulgare subsp. v... 46 0.002
gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcrip... 46 0.002
gb|BI960298.1|BI960298 HVSMEn0024C09f Hordeum vulgare rachi... 44 0.009
gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. v... 44 0.009
gb|BF254573.2|BF254573 HVSMEf0004G11f Hordeum vulgare seedl... 42 0.036
gb|BG344708.2|BG344708 HVSMEg0015E16f Hordeum vulgare pre-a... 42 0.036
gb|BI954784.1|BI954784 HVSMEm0019M04f Hordeum vulgare green... 40 0.14
gb|BI957548.1|BI957548 HVSMEn0010B13f Hordeum vulgare rachi... 40 0.14
gb|BE216153.1|BE216153 HV_CEb0009K03f Hordeum vulgare seedl... 40 0.14
gb|AV932650.1|AV932650 AV932650 K. Sato unpublished cDNA li... 40 0.14
gb|AV933309.1|AV933309 AV933309 K. Sato unpublished cDNA li... 40 0.14
gb|AV933832.1|AV933832 AV933832 K. Sato unpublished cDNA li... 40 0.14
gb|BJ469688.1|BJ469688 BJ469688 K. Sato unpublished cDNA li... 40 0.14
gb|BJ472224.1|BJ472224 BJ472224 K. Sato unpublished cDNA li... 40 0.14
gb|BM441559.2|BM441559 EBma05_SQ004_N08_R maternal, 12 DPA,... 40 0.14
gb|BQ765682.1|BQ765682 EBro03_SQ007_I24_R root, 3 week, wat... 40 0.14
gb|BU979073.1|BU979073 HA15B09r HA Hordeum vulgare subsp. v... 40 0.14
gb|CA009019.1|CA009019 HU12O16r HU Hordeum vulgare subsp. v... 40 0.14
>gb|BF262578.2|BF262578 HV_CEa0004G02f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004G02f, mRNA sequence
Length = 869
Score = 93.7 bits (47), Expect = 1e-017
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 115 ggaagcaagtggtcggtgatagcgtccagactccccggacggacggacaacgacgtcaag 174
||||||| ||||||| | || ||||||| || ||||| ||||||||||||| ||||||
Sbjct: 89 ggaagcaggtggtcgatcatcgcgtccaagcttcccggcaggacggacaacgatgtcaag 148
Query: 175 aactactggaacaccaagctcaagaag 201
|||||||||||||||||||||||||||
Sbjct: 149 aactactggaacaccaagctcaagaag 175
>gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017M09f, mRNA sequence
Length = 656
Score = 91.7 bits (46), Expect = 4e-017
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaacaccaagctcaagaag 201
||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 301 cccggccggacggacaacgacgtcaagaaccactggaacaccaagctcaagaag 354
>gb|BF629773.1|BF629773 HVSMEb0013M11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013M11f, mRNA sequence
Length = 827
Score = 89.7 bits (45), Expect = 2e-016
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 145 ctccccggacggacggacaacgacgtcaagaactactggaacaccaagctcaagaag 201
|||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctccccggccgcaccgacaacgacgtcaagaactactggaacaccaagctcaagaag 177
Score = 40.1 bits (20), Expect = 0.14
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 28 tggctcaactacctccgcccggagctccggcacggcggct 67
|||||||||||||| | ||||| |||||||||||||||
Sbjct: 4 tggctcaactacctgaggccggacatccggcacggcggct 43
>gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01B16
3-PRIME, mRNA sequence
Length = 535
Score = 77.8 bits (39), Expect = 6e-013
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 148 cccggacggacggacaacgacgtcaagaactactggaacaccaagctcaagaagc 202
||||| |||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 391 cccggccggacggacaacgagatcaagaactactggaacaccaacctcaagaagc 445
>gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019E16f, mRNA sequence
Length = 625
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 145 ctccccggacggacggacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 365 ctccccggccggacggacaacgagatcaagaactactggaacac 408
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgcccggagctccggcacggc 63
||||| ||||||||||| || |||||| | |||||||||||||| || ||| || ||||
Sbjct: 224 tgcggcaagagctgccgcctccgctggatgaactacctccgccctgacctcaagcgcggc 283
Query: 64 ggcttcaccgacga 77
||||||||||||
Sbjct: 284 aacttcaccgacga 297
>gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019G16f, mRNA sequence
Length = 624
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 145 ctccccggacggacggacaacgacgtcaagaactactggaacac 188
|||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 365 ctccccggccggacggacaacgagatcaagaactactggaacac 408
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgcccggagctccggcacggc 63
||||| ||||||||||| || |||||| | |||||||||||||| || ||| || ||||
Sbjct: 224 tgcggcaagagctgccgcctccgctggatgaactacctccgccctgacctcaagcgcggc 283
Query: 64 ggcttcaccgacga 77
||||||||||||
Sbjct: 284 aacttcaccgacga 297
>gb|CV053597.1|CV053597 BNEL101a5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL101a5 5' similar to typical
P-type R2R3 Myb protein, mRNA sequence
Length = 546
Score = 61.9 bits (31), Expect = 4e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacaccaagctcaagaag 201
||||||| |||||| |||||||||||||||||||| | |||||||||
Sbjct: 427 ggacggataacgacatcaagaactactggaacacccacctcaagaag 473
Score = 40.1 bits (20), Expect = 0.14
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 10 aagagctgccgtcttcgctggctcaactacctccgcccgg 49
||||||||||| ||||| ||| |||||||||||| ||||
Sbjct: 282 aagagctgccggcttcggtggaccaactacctccggccgg 321
>gb|BQ753632.1|BQ753632 EBan01_SQ004_M23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_M23 5', mRNA sequence
Length = 416
Score = 60.0 bits (30), Expect = 2e-007
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
||||||||||||| ||||||||||||||||||||
Sbjct: 226 ggacggacaacgaggtcaagaactactggaacac 259
>gb|BM443593.2|BM443593 EBro02_SQ005_M21_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_M21 5', mRNA sequence
Length = 378
Score = 58.0 bits (29), Expect = 6e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 10 aagagctgccgtcttcgctggctcaactacctccgcccggagctccggcacggcggc 66
||||||||||| || ||||||||||||||||| || ||||| || |||| |||||||
Sbjct: 254 aagagctgccgcctgcgctggctcaactacctgcggccggacctgcggcgcggcggc 310
>gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024E22f, mRNA sequence
Length = 669
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || |||||| ||||||||||||||||
Sbjct: 216 tgcggcaagagctgccgcctccgctggatcaactacctccgccc 259
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
||||||||||||| |||||||||||||||||||
Sbjct: 367 ggacggacaacgagatcaagaactactggaacac 400
>gb|BQ764651.1|BQ764651 EBca01_SQ004_C14_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_C14 5', mRNA sequence
Length = 576
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 145 ctccccggacggacggacaacgacgtcaagaactactgga 184
|||||||| ||||| |||||||| ||||||||||||||||
Sbjct: 349 ctccccggccggaccgacaacgaggtcaagaactactgga 388
>gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. vulgare cDNA clone HV11C18
5-PRIME, mRNA sequence
Length = 583
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || |||||| ||||||||||||||||
Sbjct: 38 tgcggcaagagctgccgcctccgctggatcaactacctccgccc 81
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
||||||||||||| |||||||||||||||||||
Sbjct: 189 ggacggacaacgagatcaagaactactggaacac 222
>emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA
Length = 1284
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || |||||| ||||||||||||||||
Sbjct: 356 tgcggcaagagctgccgcctccgctggatcaactacctccgccc 399
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
||||||||||||| |||||||||||||||||||
Sbjct: 507 ggacggacaacgagatcaagaactactggaacac 540
>emb|X70879.1|HVMYB1G H.vulgare Myb1 gene
Length = 2587
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || |||||| ||||||||||||||||
Sbjct: 1146 tgcggcaagagctgccgcctccgctggatcaactacctccgccc 1189
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
||||||||||||| |||||||||||||||||||
Sbjct: 1443 ggacggacaacgagatcaagaactactggaacac 1476
>gb|BG416961.1|BG416961 HVSMEk0015G09f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0015G09f, mRNA sequence
Length = 489
Score = 54.0 bits (27), Expect = 9e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacaccaagctcaagaag 201
|||| |||||||| |||||||||||||||||| || | |||||||||
Sbjct: 63 ggaccgacaacgaggtcaagaactactggaactcctacctcaagaag 109
>gb|BQ471469.1|BQ471469 HV02I08r HV Hordeum vulgare subsp. vulgare cDNA clone HV02I08
5-PRIME, mRNA sequence
Length = 593
Score = 54.0 bits (27), Expect = 9e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacaccaagctcaagaag 201
|||| |||||||| |||||||||||||||||| || | |||||||||
Sbjct: 421 ggaccgacaacgaggtcaagaactactggaactcctacctcaagaag 467
>gb|CA002506.1|CA002506 HS07L12r HS Hordeum vulgare subsp. vulgare cDNA clone HS07L12
5-PRIME, mRNA sequence
Length = 514
Score = 54.0 bits (27), Expect = 9e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacaccaagctcaagaag 201
|||| |||||||| |||||||||||||||||| || | |||||||||
Sbjct: 425 ggaccgacaacgaggtcaagaactactggaactcctacctcaagaag 471
>gb|CB882601.1|CB882601 HL02F10w HL Hordeum vulgare subsp. vulgare cDNA clone HL02F10
3-PRIME, mRNA sequence
Length = 610
Score = 54.0 bits (27), Expect = 9e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacaccaagctcaagaag 201
|||| |||||||| |||||||||||||||||| || | |||||||||
Sbjct: 410 ggaccgacaacgaggtcaagaactactggaactcctacctcaagaag 456
>gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42e10 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 717
Score = 54.0 bits (27), Expect = 9e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacaccaagctcaagaag 201
|||| |||||||| |||||||||||||||||| || | |||||||||
Sbjct: 398 ggaccgacaacgaggtcaagaactactggaactcctacctcaagaag 444
>gb|AL507585.1|AL507585 AL507585 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06E05V 5',
mRNA sequence
Length = 666
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
||||||||||||| |||||||||||||||||||
Sbjct: 261 ggacggacaacgagatcaagaactactggaacac 294
Score = 40.1 bits (20), Expect = 0.14
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || |||||| |||| ||||||||||
Sbjct: 110 tgcggcaagagctgccgcctgcgctggaccaaccacctccgccc 153
>gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004H07f, mRNA sequence
Length = 756
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
||||||||||||| |||||||||||||||||||
Sbjct: 347 ggacggacaacgagatcaagaactactggaacac 380
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgcccggagctccggcacggc 63
||||| ||||||||||| || |||||| | |||||||||||||| || ||| || ||||
Sbjct: 196 tgcggcaagagctgccgcctccgctggatgaactacctccgccccgacctcaagcgcggc 255
Query: 64 ggcttcaccgacga 77
||||||||||||
Sbjct: 256 aacttcaccgacga 269
>gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0014M02f, mRNA sequence
Length = 771
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgcccggagctccggcacggc 63
||||| ||||||||||| || |||||| | |||||||||||||| || ||| || ||||
Sbjct: 180 tgcggcaagagctgccgcctccgctggatgaactacctccgccccgacctcaagcgcggc 239
Query: 64 ggcttcaccgacga 77
||||||||||||
Sbjct: 240 aacttcaccgacga 253
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
||||||||||||| |||| ||||||||||||||
Sbjct: 331 ggacggacaacgagatcaaaaactactggaacac 364
>gb|BF064941.1|BF064941 HV_CEb0022A15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022A15f, mRNA sequence
Length = 838
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
||||||||||||| |||||||||||||||||||
Sbjct: 476 ggacggacaacgagatcaagaactactggaacac 509
>gb|BF620286.3|BF620286 HVSMEc0019F08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019F08f, mRNA sequence
Length = 690
Score = 52.0 bits (26), Expect = 4e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacaccaagctcaagaag 201
|||||||| |||||||||||||||||||| | |||||||||
Sbjct: 323 gacaacgagatcaagaactactggaacacccacctcaagaag 364
>gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019O20f, mRNA sequence
Length = 528
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
||||||||||||| |||||||||||||||||||
Sbjct: 363 ggacggacaacgagatcaagaactactggaacac 396
Score = 40.1 bits (20), Expect = 0.14
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || | ||| ||||||||||||||||
Sbjct: 212 tgcggcaagagctgccgcctcaggtggatcaactacctccgccc 255
>gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL17E10 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 479
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacaccaagctcaagaagcg 203
|||||||||||||| || ||||||||||||||| | | |||||||||||
Sbjct: 352 cggacggacaacgaggtgaagaactactggaactcgtacctcaagaagcg 401
>gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL20h7 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 514
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacaccaagctcaagaagcg 203
|||||||||||||| || ||||||||||||||| | | |||||||||||
Sbjct: 432 cggacggacaacgaggtgaagaactactggaactcgtacctcaagaagcg 481
>gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL40g12 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 488
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacaccaagctcaagaagcg 203
|||||||||||||| || ||||||||||||||| | | |||||||||||
Sbjct: 432 cggacggacaacgaggtgaagaactactggaactcgtacctcaagaagcg 481
>gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42d1 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 478
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacaccaagctcaagaagcg 203
|||||||||||||| || ||||||||||||||| | | |||||||||||
Sbjct: 352 cggacggacaacgaggtgaagaactactggaactcgtacctcaagaagcg 401
>gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL79d11 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 558
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacaccaagctcaagaagcg 203
|||||||||||||| || ||||||||||||||| | | |||||||||||
Sbjct: 432 cggacggacaacgaggtgaagaactactggaactcgtacctcaagaagcg 481
>gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL92e6 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 478
Score = 52.0 bits (26), Expect = 4e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaacaccaagctcaagaagcg 203
|||||||||||||| || ||||||||||||||| | | |||||||||||
Sbjct: 352 cggacggacaacgaggtgaagaactactggaactcgtacctcaagaagcg 401
>gb|CK123590.1|CK123590 BES1824104i24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I244 5-PRIME, mRNA sequence
Length = 284
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgcccgg 49
||||| ||||||||||| || || ||||||||||||||||| ||||
Sbjct: 170 tgcgggaagagctgccggctgcggtggctcaactacctccggccgg 215
>gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M184 5-PRIME, mRNA sequence
Length = 506
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgcccgg 49
||||| ||||||||||| || || ||||||||||||||||| ||||
Sbjct: 169 tgcgggaagagctgccggctgcggtggctcaactacctccggccgg 214
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 170 tcaagaactactggaacacca 190
|||||||||||||||||||||
Sbjct: 335 tcaagaactactggaacacca 355
>emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA
Length = 1102
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaacac 188
||||||||||||| |||||||||||||||||||
Sbjct: 339 ggacggacaacgagatcaagaactactggaacac 372
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgcccggagctccggcacggc 63
||||| ||||||||||| || |||||| | |||||||||||||| || ||| || ||||
Sbjct: 188 tgcggcaagagctgccgcctccgctggatgaactacctccgccccgacctcaagcgcggc 247
Query: 64 ggcttcaccgacga 77
||||||||||||
Sbjct: 248 aacttcaccgacga 261
>gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. vulgare cDNA clone HS02O24
5-PRIME, mRNA sequence
Length = 363
Score = 50.1 bits (25), Expect = 1e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaacac 188
||||||||| |||||||||||||||||||
Sbjct: 278 gacaacgacatcaagaactactggaacac 306
>gb|CV062831.1|CV062831 BNEL83e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL83e5 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 588
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaac 186
|||||||||||||| || |||||||||||||||
Sbjct: 458 cggacggacaacgaggtgaagaactactggaac 490
>gb|AL507948.1|AL507948 AL507948 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07F08V 5',
mRNA sequence
Length = 631
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 145 ctccccggacggacggacaacgacgtcaagaactactgga 184
||||| || |||||||||||||| |||||||||||||||
Sbjct: 218 ctcccgggtcggacggacaacgagatcaagaactactgga 257
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 10 aagagctgccgtcttcgctggctcaactacctccgccc 47
||||||||||| || || ||||| ||||||||||||||
Sbjct: 83 aagagctgccggctgcggtggctgaactacctccgccc 120
>gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E02f, mRNA sequence
Length = 796
Score = 48.1 bits (24), Expect = 6e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 151 ggacggacggacaacgacgtcaagaactactggaac 186
||||| ||||||||||| |||||||||||||||||
Sbjct: 502 ggacgaacggacaacgaaatcaagaactactggaac 537
>gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E14f, mRNA sequence
Length = 635
Score = 48.1 bits (24), Expect = 6e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || || ||| ||||||||||||||||
Sbjct: 230 tgcggcaagagctgccgcctccggtggatcaactacctccgccc 273
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaaca 187
|||||||||||||| ||||||||| ||||||||
Sbjct: 380 cggacggacaacgagatcaagaacttctggaaca 413
>gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_O04 5', mRNA sequence
Length = 383
Score = 48.1 bits (24), Expect = 6e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || || ||| ||||||||||||||||
Sbjct: 143 tgcggcaagagctgccgcctccggtggatcaactacctccgccc 186
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaaca 187
|||||||||||||| ||||||||| ||||||||
Sbjct: 293 cggacggacaacgagatcaagaacttctggaaca 326
>gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. vulgare cDNA clone HM13L14
5-PRIME, mRNA sequence
Length = 648
Score = 48.1 bits (24), Expect = 6e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || || ||| ||||||||||||||||
Sbjct: 239 tgcggcaagagctgccgcctccggtggatcaactacctccgccc 282
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaaca 187
|||||||||||||| ||||||||| ||||||||
Sbjct: 389 cggacggacaacgagatcaagaacttctggaaca 422
>gb|CB877704.1|CB877704 HP05O05T HP Hordeum vulgare subsp. vulgare cDNA clone HP05O05
5-PRIME, mRNA sequence
Length = 520
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 145 ctccccggacggacggacaacgacgtcaagaactactgga 184
||||| || |||||||||||||| |||||||||||||||
Sbjct: 391 ctcccgggtcggacggacaacgagatcaagaactactgga 430
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 10 aagagctgccgtcttcgctggctcaactacctccgccc 47
||||||||||| || || ||||| ||||||||||||||
Sbjct: 256 aagagctgccggctgcggtggctgaactacctccgccc 293
>gb|CV063055.1|CV063055 BNEL86b3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL86b3 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 715
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 155 ggacggacaacgacgtcaagaactactggaac 186
|||| |||||||| ||||||||||||||||||
Sbjct: 398 ggaccgacaacgatgtcaagaactactggaac 429
>emb|X70880.1|HVMYB2G H.vulgare Myb2 gene
Length = 1093
Score = 48.1 bits (24), Expect = 6e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || |||||| | ||||||||||||||
Sbjct: 790 tgcggcaagagctgccgcctccgctggatgaactacctccgccc 833
>emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA
Length = 1270
Score = 48.1 bits (24), Expect = 6e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || || ||| ||||||||||||||||
Sbjct: 215 tgcggcaagagctgccgcctccggtggatcaactacctccgccc 258
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaaca 187
|||||||||||||| ||||||||| ||||||||
Sbjct: 365 cggacggacaacgagatcaagaacttctggaaca 398
>emb|X70881.1|HVMYB3G H.vulgare myb3 gene
Length = 3241
Score = 48.1 bits (24), Expect = 6e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||| ||||||||||| || || ||| ||||||||||||||||
Sbjct: 1215 tgcggcaagagctgccgcctccggtggatcaactacctccgccc 1258
Score = 44.1 bits (22), Expect = 0.009
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactggaaca 187
|||||||||||||| ||||||||| ||||||||
Sbjct: 1519 cggacggacaacgagatcaagaacttctggaaca 1552
>gb|BG369720.1|BG369720 HVSMEi0025K10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025K10f, mRNA sequence
Length = 718
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 154 cggacggacaacgacgtcaagaactactgga 184
|||||||||||||| |||||||||||||||
Sbjct: 393 cggacggacaacgagatcaagaactactgga 423
Score = 44.1 bits (22), Expect = 0.009
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 10 aagagctgccgtcttcgctggctcaactacctccgccc 47
||||||||||| || || ||||| ||||||||||||||
Sbjct: 249 aagagctgccggctgcggtggctgaactacctccgccc 286
>gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002J21f, mRNA sequence
Length = 845
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgcccgga 50
||||| ||||||||||| || || ||| ||||||||||||| |||||
Sbjct: 189 tgcggcaagagctgccggctccggtggatcaactacctccgtccgga 235
Score = 44.1 bits (22), Expect = 0.009
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 157 acggacaacgacgtcaagaactactggaac 186
||||||||||| |||||||||| |||||||
Sbjct: 342 acggacaacgaggtcaagaacttctggaac 371
>gb|BQ466900.1|BQ466900 HS01O24T HS Hordeum vulgare subsp. vulgare cDNA clone HS01O24
5-PRIME, mRNA sequence
Length = 304
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 160 gacaacgacgtcaagaactactggaac 186
||||||||| |||||||||||||||||
Sbjct: 278 gacaacgacatcaagaactactggaac 304
>gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcription factor mRNA,
complete cds
Length = 1542
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgcccgga 50
||||| ||||||||||| || || ||| ||||||||||||| |||||
Sbjct: 290 tgcggcaagagctgccgcctccggtggatcaactacctccgtccgga 336
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 225,963
Number of Sequences: 312970
Number of extensions: 225963
Number of successful extensions: 77932
Number of sequences better than 0.5: 67
Number of HSP's better than 0.5 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77780
Number of HSP's gapped (non-prelim): 152
length of query: 1031
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1012
effective length of database: 169,188,109
effective search space: 171218366308
effective search space used: 171218366308
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)