BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4424526.2.1
(1446 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB884147.1|CB884147 HZ65J24r HZ Hordeum vulgare subsp. v... 416 e-115
gb|BI956291.1|BI956291 HVSMEn0002B06f Hordeum vulgare rachi... 400 e-110
gb|BQ765117.1|BQ765117 EBca01_SQ005_H22_R carpel, pre-anthe... 398 e-109
gb|BI958500.1|BI958500 HVSMEn0015F10f Hordeum vulgare rachi... 387 e-106
gb|BI957720.1|BI957720 HVSMEn0010N21f Hordeum vulgare rachi... 385 e-105
gb|BF628668.2|BF628668 HVSMEb0006P17f Hordeum vulgare seedl... 371 e-101
gb|BI959083.1|BI959083 HVSMEn0018B08f Hordeum vulgare rachi... 371 e-101
gb|BI959923.1|BI959923 HVSMEn0022G10f Hordeum vulgare rachi... 371 e-101
gb|BI960086.1|BI960086 HVSMEn0023C12f Hordeum vulgare rachi... 371 e-101
gb|BF622099.1|BF622099 HVSMEa0001M03f Hordeum vulgare seedl... 365 3e-099
gb|CB884113.1|CB884113 HZ48I06r HZ Hordeum vulgare subsp. v... 365 3e-099
gb|CB884125.1|CB884125 HZ53M12r HZ Hordeum vulgare subsp. v... 365 3e-099
gb|BI960217.1|BI960217 HVSMEn0023M07f Hordeum vulgare rachi... 353 1e-095
gb|BG299638.1|BG299638 HVSMEa0021D13f Hordeum vulgare seedl... 349 2e-094
gb|BI958636.1|BI958636 HVSMEn0016A10f Hordeum vulgare rachi... 349 2e-094
gb|BI958114.1|BI958114 HVSMEn0013H11f Hordeum vulgare rachi... 347 6e-094
gb|CB884134.1|CB884134 HZ58E24r HZ Hordeum vulgare subsp. v... 345 3e-093
gb|BI959822.1|BI959822 HVSMEn0021M05f Hordeum vulgare rachi... 335 2e-090
gb|BE456103.3|BE456103 HVSMEg0019N01f Hordeum vulgare pre-a... 335 2e-090
gb|BI958818.1|BI958818 HVSMEn0016M04f Hordeum vulgare rachi... 325 2e-087
gb|BI958642.1|BI958642 HVSMEn0016A18f Hordeum vulgare rachi... 323 9e-087
gb|BI960226.1|BI960226 HVSMEn0023M17f Hordeum vulgare rachi... 315 2e-084
gb|BI960525.1|BI960525 HVSMEn0024O16f Hordeum vulgare rachi... 313 9e-084
gb|BI956632.1|BI956632 HVSMEn0004H03f Hordeum vulgare rachi... 301 3e-080
gb|CB884133.1|CB884133 HZ58B01r HZ Hordeum vulgare subsp. v... 301 3e-080
gb|BF616380.2|BF616380 HVSMEc0007A22f Hordeum vulgare seedl... 291 3e-077
gb|BI959118.1|BI959118 HVSMEn0018E05f Hordeum vulgare rachi... 291 3e-077
gb|BI959197.1|BI959197 HVSMEn0018J22f Hordeum vulgare rachi... 246 2e-063
gb|BI957292.1|BI957292 HVSMEn0008L02f Hordeum vulgare rachi... 240 1e-061
gb|BI958722.1|BI958722 HVSMEn0016F18f Hordeum vulgare rachi... 234 7e-060
gb|BI956898.1|BI956898 HVSMEn0005O18f Hordeum vulgare rachi... 232 3e-059
gb|BI958199.1|BI958199 HVSMEn0013N11f Hordeum vulgare rachi... 232 3e-059
gb|CB884129.1|CB884129 HZ56F09r HZ Hordeum vulgare subsp. v... 230 1e-058
gb|BI950646.1|BI950646 HVSMEl0021P05f Hordeum vulgare spike... 222 3e-056
gb|BI957029.1|BI957029 HVSMEn0007B04f Hordeum vulgare rachi... 216 2e-054
gb|AW983065.2|AW983065 HVSMEg0004P15f Hordeum vulgare pre-a... 192 2e-047
gb|BI960244.1|BI960244 HVSMEn0023O09f Hordeum vulgare rachi... 190 9e-047
gb|BI957783.1|BI957783 HVSMEn0011F01f Hordeum vulgare rachi... 178 3e-043
gb|BI957384.1|BI957384 HVSMEn0009E09f Hordeum vulgare rachi... 170 8e-041
gb|BI958092.1|BI958092 HVSMEn0013F05f Hordeum vulgare rachi... 168 3e-040
gb|BI956210.1|BI956210 HVSMEn0001C12f Hordeum vulgare rachi... 147 1e-033
gb|CB884117.1|CB884117 HZ50G23r HZ Hordeum vulgare subsp. v... 119 3e-025
gb|BE231158.2|BE231158 HVSMEg0017C20f Hordeum vulgare pre-a... 111 7e-023
gb|BI958687.1|BI958687 HVSMEn0016D18f Hordeum vulgare rachi... 103 2e-020
gb|BI960189.1|BI960189 HVSMEn0023K03f Hordeum vulgare rachi... 96 4e-018
gb|BI958892.1|BI958892 HVSMEn0017B01f Hordeum vulgare rachi... 58 8e-007
>gb|CB884147.1|CB884147 HZ65J24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65J24
5-PRIME, mRNA sequence
Length = 567
Score = 416 bits (210), Expect = e-115
Identities = 471/558 (84%)
Strand = Plus / Minus
Query: 733 cagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcaccttgttctccgc 792
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 cagctcgttgtgcgacagcgtgttggccggcggcttgatgtacagcaccttgttttccgc 502
Query: 793 gcgcgggtcgtcggccgccagcaccgtgtacgtggcgatgtcgccctcctccacgaacac 852
|| |||||||| |||||||| |||||||||| | |||||||| |||| || ||||| ||
Sbjct: 501 acgggggtcgtccgccgccaggaccgtgtacgcgccgatgtcggcctcgtcgacgaagac 442
Query: 853 cgccttggtgtcgccgtcgccgaggacgaccgccttgtccgcgggcgggccgggggcgag 912
||||||| |||||||||||||||| ||| | ||||| | || || | |||| |||
Sbjct: 441 gaccttggtctcgccgtcgccgaggatgacgacgttgtcggttgggggcgcaggggagag 382
Query: 913 gacctgcccgaccttggggaggccgaagcccgcgaagaagccggccacggcgtaggtgta 972
||||||||||| ||||||| | | || |||||| || |||||| ||||||||||
Sbjct: 381 gacctgcccgatggtggggagcgagtacccggcgaagtagttggccaccacgtaggtgta 322
Query: 973 gggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgcctaggatggactt 1032
||| ||| || || ||||| |||| |||||||||||| ||||| | | | |||||||||
Sbjct: 321 ggggatgtcctcgccctcgatggcacggcggatgcccgccttgatggcgaagatggactt 262
Query: 1033 ggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaagaacct 1092
||||||||||||| ||| || ||||| |||||||| |||||||||||||||||||||||
Sbjct: 261 ggccggctccacggcgccggtacggtcgacgtccagcccgaactccgacgggaagaacct 202
Query: 1093 cttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcat 1152
||| ||||| |||||||||||||||||| ||| |||| | |||| ||||||||||||||
Sbjct: 201 cttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcggcgatctgcat 142
Query: 1153 cgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctg 1212
|| || ||| ||||||||| ||||| || |||| || |||||||||||||| | ||
Sbjct: 141 cgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcaccaggctgccgtg 82
Query: 1213 gtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgc 1272
||||||||||||||||||||||||||| ||||| | |||||||||| |||||||||||
Sbjct: 81 gtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtcttgagcagctg 22
Query: 1273 cgctttggccgggtcgga 1290
||| ||||||||||||||
Sbjct: 21 cgccttggccgggtcgga 4
>gb|BI956291.1|BI956291 HVSMEn0002B06f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0002B06f,
mRNA sequence
Length = 839
Score = 400 bits (202), Expect = e-110
Identities = 578/698 (82%), Gaps = 4/698 (0%)
Strand = Plus / Minus
Query: 705 tgccggtcttcttctcccacagcgacagcagctcgttgtgcgacagcgtgttggccggcg 764
||||||| || || |||||||||| || ||| |||||||| | |||||||| ||||||||
Sbjct: 758 tgccggtgttgttttcccacagcgccaccag-tcgttgtgggccagcgtgt-ggccggcg 701
Query: 765 gcttgatgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacg 824
|||| |||| |||||| ||||| ||||| || |||||||| ||||||| | |||||||
Sbjct: 700 gctttatgtccagcac-ttgttttccgcacgggggtcgtcccccgccaggccggtgtacg 642
Query: 825 tggcgatgtcgccctcctccacgaacaccgcctt-ggtgtcgccgtcgccgaggacgacc 883
| |||||||| |||| || ||||| || ||| ||| |||||||||||||||| |||
Sbjct: 641 cgccgatgtcggcctcgtcgacgaaagacgactttggtctcgccgtcgccgaggatgacg 582
Query: 884 gccttgtccgcgggcgggccgggggcgaggacctgcccgaccttggggaggccgaagccc 943
| ||||| | || || | |||| |||||||||||||| ||||||| | | ||
Sbjct: 581 acgttgtcggttgggggcgcaggggagaggacctgcccgatggtggggagcgagtacccg 522
Query: 944 gcgaagaagccggccacggcgtaggtgtagggtatgcccgcggcctcggtggcgcggcgg 1003
|||||| || |||||| ||||||||||||| ||| || || ||||| |||| ||||||
Sbjct: 521 gcgaagtagttggccaccacgtaggtgtaggggatgtcctcgccctcgatggcacggcgg 462
Query: 1004 atgcccaccttggcgcctaggatggacttggccggctccacgatgcccgtgcggtccacg 1063
|||||| ||||| | | | |||||||||||||||||||||| ||| || ||||| |||
Sbjct: 461 atgcccgccttgatggcgaagatggacttggccggctccacggcgccggtacggtcgacg 402
Query: 1064 tccaggccgaactccgacgggaagaacctcttgacgtttccggcctccttgatggcgtcg 1123
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct: 401 tccagcccgaactccgacgggaagaacctcttcacgttgccggcctccttgatggcggcg 342
Query: 1124 acgagccggctctggtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcg 1183
| |||| | |||| |||||||||||||||| || ||| ||||||||| ||||| ||
Sbjct: 341 atgagcttggtctgctcggcgatctgcatcgcgcccagcgtggagatgacgacgtcggcc 282
Query: 1184 cccttcaccgcgctcaccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacg 1243
|||| || |||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct: 281 gccttaacggcgctcaccaggctgccgtggtcgtacaggtcgcccttgaggagcgtgacg 222
Query: 1244 ccggcgtcctggaagctcttgagcagcgccgctttggccgggtcggacggcgccgtgtcc 1303
|| | |||||||||| ||||||||||| ||| |||||||||||||| || || ||||||
Sbjct: 221 cccgagtcctggaaggtcttgagcagctgcgccttggccgggtcggagggggcggtgtcc 162
Query: 1304 ctgacgagcgccgaggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgccc 1363
| |||||||||| |||||||||||| ||||| ||||||||||| ||||||||| ||||
Sbjct: 161 cggacgagcgccagggtggggtggccgagccgggcgctcgccgcgacgacgtgcttgccg 102
Query: 1364 aggtaccccgtgccgccgaccaccaggatcttgctctt 1401
| ||| ||||| ||||||| ||| ||||||||||||||
Sbjct: 101 atgtaacccgtcccgccgatcacaaggatcttgctctt 64
>gb|BQ765117.1|BQ765117 EBca01_SQ005_H22_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_H22 5', mRNA sequence
Length = 668
Score = 398 bits (201), Expect = e-109
Identities = 504/605 (83%)
Strand = Plus / Minus
Query: 797 gggtcgtcggccgccagcaccgtgtacgtggcgatgtcgccctcctccacgaacaccgcc 856
|||||||| |||||||| || ||||||| | |||||||| |||| || ||||| || ||
Sbjct: 660 gggtcgtccgccgccaggactgtgtacgcgccgatgtcggcctcgtcgacgaagacgacc 601
Query: 857 ttggtgtcgccgtcgccgaggacgaccgccttgtccgcgggcgggccgggggcgaggacc 916
||||| |||||||||||||||| ||| | ||||| | || || | |||| |||||||
Sbjct: 600 ttggtctcgccgtcgccgaggatgacgacgttgtcggttgggggcgcaggggagaggacc 541
Query: 917 tgcccgaccttggggaggccgaagcccgcgaagaagccggccacggcgtaggtgtagggt 976
||||||| ||||||| | | || |||||| || |||||| |||||||||||||
Sbjct: 540 tgcccgatggtggggagcgagtacccggcgaagtagttggccaccacgtaggtgtagggg 481
Query: 977 atgcccgcggcctcggtggcgcggcggatgcccaccttggcgcctaggatggacttggcc 1036
||| || || ||||| |||| |||||||||||| ||||| | | | |||||||||||||
Sbjct: 480 atgtcctcgccctcgatggcacggcggatgcccgccttgatggcgaagatggacttggcc 421
Query: 1037 ggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaagaacctcttg 1096
||||||||| ||| || ||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 420 ggctccacggcgccggtacggtcgacgtccagcccgaactccgacgggaagaacctcttc 361
Query: 1097 acgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgat 1156
||||| |||||||||||||||||| ||| |||| | |||| ||||||||||||||||
Sbjct: 360 acgttgccggcctccttgatggcggcgatgagcttggtctgctcggcgatctgcatcgcg 301
Query: 1157 ccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcg 1216
|| ||| ||||||||| ||||| || |||| || |||||||||||||| | ||||||
Sbjct: 300 cccagcgtggagatgacgacgtcggccgccttaacggcgctcaccaggctgccgtggtcg 241
Query: 1217 tacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgct 1276
||||||||||||||||||||||| ||||| | |||||||||| ||||||||||| |||
Sbjct: 240 tacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtcttgagcagctgcgcc 181
Query: 1277 ttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgc 1336
|||||||||||||| || || ||||||| |||||||||| |||||||||||| |||||
Sbjct: 180 ttggccgggtcggagggggcggtgtcccggacgagcgccagggtggggtggccgagccgg 121
Query: 1337 gcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttg 1396
||||||||||| ||||||||| |||| | ||| ||||| ||||||| ||| |||||||||
Sbjct: 120 gcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccgatcacaaggatcttg 61
Query: 1397 ctctt 1401
|||||
Sbjct: 60 ctctt 56
>gb|BI958500.1|BI958500 HVSMEn0015F10f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0015F10f,
mRNA sequence
Length = 657
Score = 387 bits (195), Expect = e-106
Identities = 495/595 (83%)
Strand = Plus / Minus
Query: 807 ccgccagcaccgtgtacgtggcgatgtcgccctcctccacgaacaccgccttggtgtcgc 866
||||||| |||||||||| | |||||||| |||| || ||||| || | ||||| ||||
Sbjct: 656 ccgccaggaccgtgtacgcgccgatgtcggcctcgtcgacgaagacgactttggtctcgc 597
Query: 867 cgtcgccgaggacgaccgccttgtccgcgggcgggccgggggcgaggacctgcccgacct 926
|||||||||||| ||| | ||||| | || || | |||| ||||||||||||||
Sbjct: 596 cgtcgccgaggatgacgacgttgtcggttgggggcgcaggggagaggacctgcccgatgg 537
Query: 927 tggggaggccgaagcccgcgaagaagccggccacggcgtaggtgtagggtatgcccgcgg 986
||||||| | | || |||||| || |||||| ||||||||||||| ||| || ||
Sbjct: 536 tggggagcgagtacccggcgaagtagttggccaccacgtaggtgtaggggatgtcctcgc 477
Query: 987 cctcggtggcgcggcggatgcccaccttggcgcctaggatggacttggccggctccacga 1046
||||| |||| |||||||||||| ||||| | | | ||||||||||||||||||||||
Sbjct: 476 cctcgatggcacggcggatgcccgccttgatggcgaagatggacttggccggctccacgg 417
Query: 1047 tgcccgtgcggtccacgtccaggccgaactccgacgggaagaacctcttgacgtttccgg 1106
||| || ||||| |||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct: 416 cgccggtacggtcgacgtccagcccgaactccgacgggaagaacctcttcacgttgccgg 357
Query: 1107 cctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagcacgg 1166
|||||||||||||| ||| |||| | |||| |||||||||||||||| || ||| ||
Sbjct: 356 cctccttgatggcggcgatgagcttggtctgctcggcgatctgcatcgcgcccagcgtgg 297
Query: 1167 agatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacaggtcgc 1226
||||||| ||||| || |||| || |||||||||||||| | ||||||||||||||||
Sbjct: 296 agatgacgacgtcggccgccttaacggcgctcaccaggctgccgtggtcgtacaggtcgc 237
Query: 1227 ccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggccgggt 1286
||||||||||||| ||||| | |||||||||| ||||||||||| ||| ||||||||||
Sbjct: 236 ccttgaggagcgtgacgcccgagtcctggaaggtcttgagcagctgcgccttggccgggt 177
Query: 1287 cggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccg 1346
|||| || || ||||||| |||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 176 cggagggggcggtgtcccggacgagcgccagggtggggtggccgagccgggcgctcgccg 117
Query: 1347 ccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctctt 1401
| ||||||||| |||| | ||| ||||| ||||||| ||| ||||||||||||||
Sbjct: 116 cgacgacgtgcttgccgatgtaacccgtcccgccgatcacaaggatcttgctctt 62
>gb|BI957720.1|BI957720 HVSMEn0010N21f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010N21f,
mRNA sequence
Length = 660
Score = 385 bits (194), Expect = e-105
Identities = 488/586 (83%)
Strand = Plus / Minus
Query: 816 ccgtgtacgtggcgatgtcgccctcctccacgaacaccgccttggtgtcgccgtcgccga 875
||||||||| | |||||||| |||| || ||||| || ||||||| |||||||||||||
Sbjct: 629 ccgtgtacgcgccgatgtcggcctcgtcgacgaaaacgaccttggtctcgccgtcgccga 570
Query: 876 ggacgaccgccttgtccgcgggcgggccgggggcgaggacctgcccgaccttggggaggc 935
||| ||| | ||||| | || || | |||| |||||||||||||| |||||||
Sbjct: 569 ggatgacgacgttgtcggttgggggcgcaggggagaggacctgcccgatggtggggagcg 510
Query: 936 cgaagcccgcgaagaagccggccacggcgtaggtgtagggtatgcccgcggcctcggtgg 995
| | || |||||| || |||||| ||||||||||||| ||| || || ||||| |||
Sbjct: 509 agtacccggcgaagtagttggccaccacgtaggtgtaggggatgtcctcgccctcgatgg 450
Query: 996 cgcggcggatgcccaccttggcgcctaggatggacttggccggctccacgatgcccgtgc 1055
| |||||||||||| ||||| | | | |||||||||||||||||||||| ||| || |
Sbjct: 449 cacggcggatgcccgccttgatggcgaagatggacttggccggctccacggcgccggtac 390
Query: 1056 ggtccacgtccaggccgaactccgacgggaagaacctcttgacgtttccggcctccttga 1115
|||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 389 ggtcgacgtccagcccgaactccgacgggaagaacctcttcacgttgccggcctccttga 330
Query: 1116 tggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagcacggagatgacca 1175
||||| ||| |||| | |||| |||||||||||||||| || ||| ||||||||| |
Sbjct: 329 tggcggcgatgagcttggtctgctcggcgatctgcatcgcgcccagcgtggagatgacga 270
Query: 1176 cgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacaggtcgcccttgagga 1235
|||| || |||| || |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 269 cgtcggccgccttaacggcgctcaccaggctgccgtggtcgtacaggtcgcccttgagga 210
Query: 1236 gcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggccgggtcggacggcg 1295
|||| ||||| | |||||||||| ||||||||||| ||| |||||||||||||| || |
Sbjct: 209 gcgtgacgcccgagtcctggaaggtcttgagcagctgcgccttggccgggtcggaggggg 150
Query: 1296 ccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccgccacgacgt 1355
| ||||||| |||||||||| |||||||||||| ||||| ||||||||||| |||||||
Sbjct: 149 cggtgtcccggacgagcgccagggtggggtggccgagccgggcgctcgccgcgacgacgt 90
Query: 1356 gcctgcccaggtaccccgtgccgccgaccaccaggatcttgctctt 1401
|| |||| | ||| ||||| ||||||| ||| ||||||||||||||
Sbjct: 89 gcttgccgatgtaacccgtcccgccgatcacaaggatcttgctctt 44
>gb|BF628668.2|BF628668 HVSMEb0006P17f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0006P17f, mRNA sequence
Length = 714
Score = 371 bits (187), Expect = e-101
Identities = 376/439 (85%)
Strand = Plus / Minus
Query: 963 cgtaggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgccta 1022
||||||||||||| ||| || || ||||| |||| |||||||||||| ||||| | | |
Sbjct: 503 cgtaggtgtaggggatgtcctcgccctcgatggcacggcggatgcccgccttgatggcga 444
Query: 1023 ggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacg 1082
|||||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||
Sbjct: 443 agatggacttggccggctccacggcgccggtacggtcgacgtccagcccgaactccgacg 384
Query: 1083 ggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
||||||||||||| ||||| |||||||||||||||||| ||| |||| | |||| ||||
Sbjct: 383 ggaagaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcgg 324
Query: 1143 cgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcacca 1202
|||||||||||| || ||| ||||||||| ||||| || |||| || ||||||||||
Sbjct: 323 cgatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcacca 264
Query: 1203 ggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctct 1262
|||| | ||||||||||||||||||||||||||||| ||||| | |||||||||| |||
Sbjct: 263 ggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtct 204
Query: 1263 tgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtgg 1322
|||||||| ||| |||||||||||||| || || ||||||| |||||||||| |||||
Sbjct: 203 tgagcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcgccagggtgg 144
Query: 1323 ggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccga 1382
||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| |||||||
Sbjct: 143 ggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccga 84
Query: 1383 ccaccaggatcttgctctt 1401
||| ||||||||||||||
Sbjct: 83 tcacaaggatcttgctctt 65
Score = 85.7 bits (43), Expect = 4e-015
Identities = 79/91 (86%)
Strand = Plus / Minus
Query: 759 ccggcggcttgatgtacagcaccttgttctccgcgcgcgggtcgtcggccgccagcaccg 818
|||||||||| |||| |||||||||||| ||||| || |||||||| |||||||| ||||
Sbjct: 708 ccggcggcttaatgtccagcaccttgttttccgcacgggggtcgtccgccgccaggaccg 649
Query: 819 tgtacgtggcgatgtcgccctcctccacgaa 849
|||||| | |||||||| |||| || |||||
Sbjct: 648 tgtacgcgccgatgtcggcctcgtcgacgaa 618
>gb|BI959083.1|BI959083 HVSMEn0018B08f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0018B08f,
mRNA sequence
Length = 656
Score = 371 bits (187), Expect = e-101
Identities = 376/439 (85%)
Strand = Plus / Minus
Query: 963 cgtaggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgccta 1022
||||||||||||| ||| || || ||||| |||| |||||||||||| ||||| | | |
Sbjct: 500 cgtaggtgtaggggatgtcctcgccctcgatggcacggcggatgcccgccttgatggcga 441
Query: 1023 ggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacg 1082
|||||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||
Sbjct: 440 agatggacttggccggctccacggcgccggtacggtcgacgtccagcccgaactccgacg 381
Query: 1083 ggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
||||||||||||| ||||| |||||||||||||||||| ||| |||| | |||| ||||
Sbjct: 380 ggaagaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcgg 321
Query: 1143 cgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcacca 1202
|||||||||||| || ||| ||||||||| ||||| || |||| || ||||||||||
Sbjct: 320 cgatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcacca 261
Query: 1203 ggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctct 1262
|||| | ||||||||||||||||||||||||||||| ||||| | |||||||||| |||
Sbjct: 260 ggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtct 201
Query: 1263 tgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtgg 1322
|||||||| ||| |||||||||||||| || || ||||||| |||||||||| |||||
Sbjct: 200 tgagcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcgccagggtgg 141
Query: 1323 ggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccga 1382
||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| |||||||
Sbjct: 140 ggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccga 81
Query: 1383 ccaccaggatcttgctctt 1401
||| ||||||||||||||
Sbjct: 80 tcacaaggatcttgctctt 62
>gb|BI959923.1|BI959923 HVSMEn0022G10f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0022G10f,
mRNA sequence
Length = 629
Score = 371 bits (187), Expect = e-101
Identities = 457/547 (83%)
Strand = Plus / Minus
Query: 855 ccttggtgtcgccgtcgccgaggacgaccgccttgtccgcgggcgggccgggggcgagga 914
||||||| |||||||||||||||| ||| | ||||| | || || | |||| |||||
Sbjct: 608 ccttggtctcgccgtcgccgaggatgacgacgttgtcggttgggggcgcaggggagagga 549
Query: 915 cctgcccgaccttggggaggccgaagcccgcgaagaagccggccacggcgtaggtgtagg 974
||||||||| ||||||| | | || |||||| || |||||| ||||||||||||
Sbjct: 548 cctgcccgatggtggggagcgagtacccggcgaagtagttggccaccacgtaggtgtagg 489
Query: 975 gtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgcctaggatggacttgg 1034
| ||| || || ||||| |||| |||||||||||| ||||| | | | |||||||||||
Sbjct: 488 ggatgtcctcgccctcgatggcacggcggatgcccgccttgatggcgaagatggacttgg 429
Query: 1035 ccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaagaacctct 1094
||||||||||| ||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct: 428 ccggctccacggcgccggtacggtcgacgtccagcccgaactccgacgggaagaacctct 369
Query: 1095 tgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcg 1154
| ||||| |||||||||||||||||| ||| |||| | |||| ||||||||||||||||
Sbjct: 368 tcacgttgccggcctccttgatggcggcgatgagcttggtctgctcggcgatctgcatcg 309
Query: 1155 atccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggt 1214
|| ||| ||||||||| ||||| || |||| || |||||||||||||| | ||||
Sbjct: 308 cgcccagcgtggagatgacgacgtcggccgccttaacggcgctcaccaggctgccgtggt 249
Query: 1215 cgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccg 1274
||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||| ||
Sbjct: 248 cgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtcttgagcagctgcg 189
Query: 1275 ctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagcc 1334
| |||||||||||||| || || ||||||| |||||||||| |||||||||||| ||||
Sbjct: 188 ccttggccgggtcggagggggcggtgtcccggacgagcgccagggtggggtggccgagcc 129
Query: 1335 gcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatct 1394
| ||||||||||| ||||||||| |||| | ||| ||||| ||||||| ||| |||||||
Sbjct: 128 gggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccgatcacaaggatct 69
Query: 1395 tgctctt 1401
|||||||
Sbjct: 68 tgctctt 62
>gb|BI960086.1|BI960086 HVSMEn0023C12f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0023C12f,
mRNA sequence
Length = 627
Score = 371 bits (187), Expect = e-101
Identities = 457/547 (83%)
Strand = Plus / Minus
Query: 855 ccttggtgtcgccgtcgccgaggacgaccgccttgtccgcgggcgggccgggggcgagga 914
||||||| |||||||||||||||| ||| | ||||| | || || | |||| |||||
Sbjct: 594 ccttggtctcgccgtcgccgaggatgacgacgttgtcggttgggggcgcaggggagagga 535
Query: 915 cctgcccgaccttggggaggccgaagcccgcgaagaagccggccacggcgtaggtgtagg 974
||||||||| ||||||| | | || |||||| || |||||| ||||||||||||
Sbjct: 534 cctgcccgatggtggggagcgagtacccggcgaagtagttggccaccacgtaggtgtagg 475
Query: 975 gtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgcctaggatggacttgg 1034
| ||| || || ||||| |||| |||||||||||| ||||| | | | |||||||||||
Sbjct: 474 ggatgtcctcgccctcgatggcacggcggatgcccgccttgatggcgaagatggacttgg 415
Query: 1035 ccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaagaacctct 1094
||||||||||| ||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct: 414 ccggctccacggcgccggtacggtcgacgtccagcccgaactccgacgggaagaacctct 355
Query: 1095 tgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcg 1154
| ||||| |||||||||||||||||| ||| |||| | |||| ||||||||||||||||
Sbjct: 354 tcacgttgccggcctccttgatggcggcgatgagcttggtctgctcggcgatctgcatcg 295
Query: 1155 atccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggt 1214
|| ||| ||||||||| ||||| || |||| || |||||||||||||| | ||||
Sbjct: 294 cgcccagcgtggagatgacgacgtcggccgccttaacggcgctcaccaggctgccgtggt 235
Query: 1215 cgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccg 1274
||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||| ||
Sbjct: 234 cgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtcttgagcagctgcg 175
Query: 1275 ctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagcc 1334
| |||||||||||||| || || ||||||| |||||||||| |||||||||||| ||||
Sbjct: 174 ccttggccgggtcggagggggcggtgtcccggacgagcgccagggtggggtggccgagcc 115
Query: 1335 gcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatct 1394
| ||||||||||| ||||||||| |||| | ||| ||||| ||||||| ||| |||||||
Sbjct: 114 gggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccgatcacaaggatct 55
Query: 1395 tgctctt 1401
|||||||
Sbjct: 54 tgctctt 48
>gb|BF622099.1|BF622099 HVSMEa0001M03f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0001M03f, mRNA sequence
Length = 608
Score = 365 bits (184), Expect = 3e-099
Identities = 456/547 (83%)
Strand = Plus / Minus
Query: 855 ccttggtgtcgccgtcgccgaggacgaccgccttgtccgcgggcgggccgggggcgagga 914
||||||| |||||||||||||||| ||| | ||||| | || || | |||| |||||
Sbjct: 608 ccttggtctcgccgtcgccgaggatgacgacgttgtcggttgggggcgcaggggagagga 549
Query: 915 cctgcccgaccttggggaggccgaagcccgcgaagaagccggccacggcgtaggtgtagg 974
||||||||| ||||||| | | || |||||| || |||||| |||||||||||
Sbjct: 548 cctgcccgatggtggggagcgagtacccggcgaagtagttggccaccacgtaggtgtagn 489
Query: 975 gtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgcctaggatggacttgg 1034
| ||| || || ||||| |||| |||||||||||| ||||| | | | |||||||||||
Sbjct: 488 ggatgtcctcgccctcgatggcacggcggatgcccgccttgatggcgaagatggacttgg 429
Query: 1035 ccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgggaagaacctct 1094
||||||||||| ||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct: 428 ccggctccacggcgccggtacggtcgacgtccagcccgaactccgacgggaagaacctct 369
Query: 1095 tgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcg 1154
| ||||| |||||||||||||||||| ||| |||| | |||| ||||||||||||||||
Sbjct: 368 tcacgttgccggcctccttgatggcggcgatgagcttggtctgctcggcgatctgcatcg 309
Query: 1155 atccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggt 1214
|| ||| ||||||||| ||||| || |||| || |||||||||||||| | ||||
Sbjct: 308 cgcccagcgtggagatgacgacgtcggccgccttaacggcgctcaccaggctgccgtggt 249
Query: 1215 cgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccg 1274
||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||| ||
Sbjct: 248 cgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtcttgagcagctgcg 189
Query: 1275 ctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagcc 1334
| |||||||||||||| || || ||||||| |||||||||| |||||||||||| ||||
Sbjct: 188 ccttggccgggtcggagggggcggtgtcccggacgagcgccagggtggggtggccgagcc 129
Query: 1335 gcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatct 1394
| ||||||||||| ||||||||| |||| | ||| ||||| ||||||| ||| |||||||
Sbjct: 128 gggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccgatcacaaggatct 69
Query: 1395 tgctctt 1401
|||||||
Sbjct: 68 tgctctt 62
>gb|CB884113.1|CB884113 HZ48I06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48I06
5-PRIME, mRNA sequence
Length = 510
Score = 365 bits (184), Expect = 3e-099
Identities = 373/436 (85%)
Strand = Plus / Minus
Query: 966 aggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgcctagga 1025
|||||||||| ||| || || ||||| |||| |||||||||||| ||||| | | | ||
Sbjct: 510 aggtgtaggggatgtcctcgccctcgatggcacggcggatgcccgccttgatggcgaaga 451
Query: 1026 tggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacggga 1085
|||||||||||||||||||| ||| || ||||| |||||||| ||||||||||||||||
Sbjct: 450 tggacttggccggctccacggcgccggtacggtcgacgtccagcccgaactccgacggga 391
Query: 1086 agaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcga 1145
|||||||||| ||||| |||||||||||||||||| ||| |||| | |||| |||||||
Sbjct: 390 agaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcggcga 331
Query: 1146 tctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggc 1205
||||||||| || ||| ||||||||| ||||| || |||| || |||||||||||||
Sbjct: 330 tctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcaccaggc 271
Query: 1206 tagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttga 1265
| | ||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||
Sbjct: 270 tgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtcttga 211
Query: 1266 gcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggt 1325
||||| ||| |||||||||||||| || || ||||||| |||||||||| ||||||||
Sbjct: 210 gcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcgccagggtggggt 151
Query: 1326 ggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgacca 1385
|||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| ||||||| ||
Sbjct: 150 ggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccgatca 91
Query: 1386 ccaggatcttgctctt 1401
| ||||||||||||||
Sbjct: 90 caaggatcttgctctt 75
>gb|CB884125.1|CB884125 HZ53M12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53M12
5-PRIME, mRNA sequence
Length = 497
Score = 365 bits (184), Expect = 3e-099
Identities = 373/436 (85%)
Strand = Plus / Minus
Query: 966 aggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgcctagga 1025
|||||||||| ||| || || ||||| |||| |||||||||||| ||||| | | | ||
Sbjct: 497 aggtgtaggggatgtcctcgccctcgatggcacggcggatgcccgccttgatggcgaaga 438
Query: 1026 tggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacggga 1085
|||||||||||||||||||| ||| || ||||| |||||||| ||||||||||||||||
Sbjct: 437 tggacttggccggctccacggcgccggtacggtcgacgtccagcccgaactccgacggga 378
Query: 1086 agaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcga 1145
|||||||||| ||||| |||||||||||||||||| ||| |||| | |||| |||||||
Sbjct: 377 agaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcggcga 318
Query: 1146 tctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggc 1205
||||||||| || ||| ||||||||| ||||| || |||| || |||||||||||||
Sbjct: 317 tctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcaccaggc 258
Query: 1206 tagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttga 1265
| | ||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||
Sbjct: 257 tgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtcttga 198
Query: 1266 gcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggt 1325
||||| ||| |||||||||||||| || || ||||||| |||||||||| ||||||||
Sbjct: 197 gcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcgccagggtggggt 138
Query: 1326 ggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgacca 1385
|||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| ||||||| ||
Sbjct: 137 ggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccgatca 78
Query: 1386 ccaggatcttgctctt 1401
| ||||||||||||||
Sbjct: 77 caaggatcttgctctt 62
>gb|BI960217.1|BI960217 HVSMEn0023M07f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0023M07f,
mRNA sequence
Length = 636
Score = 353 bits (178), Expect = 1e-095
Identities = 499/606 (82%)
Strand = Plus / Minus
Query: 776 agcaccttgttctccgcgcgcgggtcgtcggccgccagcaccgtgtacgtggcgatgtcg 835
||||||||||| ||||| || |||||||| |||||||| |||||||||| | ||||||||
Sbjct: 636 agcaccttgttttccgcacgggggtcgtccgccgccaggaccgtgtacgcgccgatgtcg 577
Query: 836 ccctcctccacgaacaccgccttggtgtcgccgtcgccgaggacgaccgccttgtccgcg 895
|||| || ||||| || ||||||| |||||||||||||||| ||| | ||||| |
Sbjct: 576 gcctcgtcgacgaagacgaccttggtctcgccgtcgccgaggatgacgacgttgtcggtt 517
Query: 896 ggcgggccgggggcgaggacctgcccgaccttggggaggccgaagcccgcgaagaagccg 955
|| || | |||| |||||||||||||| ||||||| | | || |||||| || |
Sbjct: 516 gggggcgcaggggagaggacctgcccgatggtggggagcgagtacccggcgaagtagttg 457
Query: 956 gccacggcgtaggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttg 1015
||||| ||||||||||||| ||| || || ||||| |||| |||||||||||| |||||
Sbjct: 456 gccaccacgtaggtgtaggggatgtcctcgccctcgatggcacggcggatgcccgccttg 397
Query: 1016 gcgcctaggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaac 1075
| | | |||||||||||||||||||||| ||| || ||||| |||||||| ||||||
Sbjct: 396 atggcgaagatggacttggccggctccacggcgccggtacggtcgacgtccagcccgaac 337
Query: 1076 tccgacgggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctc 1135
|||||||||||||||||||| ||||| |||||||||||||||||| ||| |||| | ||
Sbjct: 336 tccgacgggaagaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtc 277
Query: 1136 tggtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcg 1195
|| |||||||||||||||| || ||| ||||||||| ||||| || |||| || |||
Sbjct: 276 tgctcggcgatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcg 217
Query: 1196 ctcaccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctgg 1255
||||||||||| | |||||||||||||||||| ||||| ||||| | |||||||
Sbjct: 216 ctcaccaggctgccgtggtcgtacaggtcgcccccccccagcgtgacgcccgagtcctgg 157
Query: 1256 aagctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgcc 1315
||| ||||||||||| ||| |||||||||||||| || || ||||||| ||||||||||
Sbjct: 156 aaggtcttgagcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcgcc 97
Query: 1316 gaggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtg 1375
|||||||||||| ||||| ||||||||||| ||||||||| |||| | ||| |||||
Sbjct: 96 agggtggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtc 37
Query: 1376 ccgccg 1381
||||||
Sbjct: 36 ccgccg 31
>gb|BG299638.1|BG299638 HVSMEa0021D13f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0021D13f, mRNA sequence
Length = 569
Score = 349 bits (176), Expect = 2e-094
Identities = 373/439 (84%)
Strand = Plus / Minus
Query: 963 cgtaggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgccta 1022
||||||||||||| ||| || || | ||| |||| |||||||||||| ||||| | | |
Sbjct: 485 cgtaggtgtaggggatgtcctcgccttcgatggcacggcggatgcccgccttgatggcga 426
Query: 1023 ggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacg 1082
|||||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||
Sbjct: 425 agatggacttggccggctccacggcgccggtacggtcgacgtccagcccgaactccgacg 366
Query: 1083 ggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
||||||||||||| ||||| |||||||||||||||||| ||| |||| | |||| ||||
Sbjct: 365 ggaagaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcgg 306
Query: 1143 cgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcacca 1202
|||||||||||| || ||| ||||||||| ||||| || |||| || ||||||||||
Sbjct: 305 cgatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcacca 246
Query: 1203 ggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctct 1262
|||| | ||||||||||||||||||||||||||||| ||||| | |||||||||| |||
Sbjct: 245 ggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtct 186
Query: 1263 tgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtgg 1322
|||||||| ||| |||||||||||||| || | ||||||| ||||||||| |||||
Sbjct: 185 tgagcagctgcgccttggccgggtcggaggggncggtgtcccgtacgagcgccagggtgg 126
Query: 1323 ggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccga 1382
||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| |||||||
Sbjct: 125 ggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccga 66
Query: 1383 ccaccaggatcttgctctt 1401
||| ||||||||||||||
Sbjct: 65 tcacaaggatcttgctctt 47
>gb|BI958636.1|BI958636 HVSMEn0016A10f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0016A10f,
mRNA sequence
Length = 668
Score = 349 bits (176), Expect = 2e-094
Identities = 373/439 (84%)
Strand = Plus / Minus
Query: 963 cgtaggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgccta 1022
||||||||||||| ||| || || | || |||| |||||||||||| ||||| | |
Sbjct: 501 cgtaggtgtagggnatgtcctcgcctccgatggcacggcggatgcccgccttgatgggaa 442
Query: 1023 ggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacg 1082
|||||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||
Sbjct: 441 agatggacttggccggctccacggcgccggtacggtcgacgtccagcccgaactccgacg 382
Query: 1083 ggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
||||||||||||| ||||| |||||||||||||||||| ||| |||| | |||| ||||
Sbjct: 381 ggaagaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcgg 322
Query: 1143 cgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcacca 1202
|||||||||||| || ||| ||||||||| ||||| || |||| || ||||||||||
Sbjct: 321 cgatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcacca 262
Query: 1203 ggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctct 1262
|||| | ||||||||||||||||||||||||||||| ||||| | |||||||||| |||
Sbjct: 261 ggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtct 202
Query: 1263 tgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtgg 1322
|||||||| ||| |||||||||||||| || || ||||||| |||||||||| |||||
Sbjct: 201 tgagcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcgccagggtgg 142
Query: 1323 ggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccga 1382
||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| |||||||
Sbjct: 141 ggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccga 82
Query: 1383 ccaccaggatcttgctctt 1401
||| ||||||||||||||
Sbjct: 81 tcacaaggatcttgctctt 63
>gb|BI958114.1|BI958114 HVSMEn0013H11f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0013H11f,
mRNA sequence
Length = 889
Score = 347 bits (175), Expect = 6e-094
Identities = 355/415 (85%)
Strand = Plus / Minus
Query: 987 cctcggtggcgcggcggatgcccaccttggcgcctaggatggacttggccggctccacga 1046
||||| |||| |||||||||||| | ||| | | | ||||||||||||||||||||||
Sbjct: 480 cctcgatggcacggcggatgcccgctttgatggccaagatggacttggccggctccacgg 421
Query: 1047 tgcccgtgcggtccacgtccaggccgaactccgacgggaagaacctcttgacgtttccgg 1106
||| || ||||| |||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct: 420 cgccggtacggtcgacgtccagcccgaactccgacgggaagaacctcttcacgttgccgg 361
Query: 1107 cctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagcacgg 1166
|||||||||||||| ||| |||| | |||| |||||||||||||||| || ||| ||
Sbjct: 360 cctccttgatggcggcgatgagcttggtctgctcggcgatctgcatcgcgcccagcgtgg 301
Query: 1167 agatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacaggtcgc 1226
||||||| ||||| || |||| || |||||||||||||| | ||||||||||||||||
Sbjct: 300 agatgacgacgtcggccgccttaacggcgctcaccaggctgccgtggtcgtacaggtcgc 241
Query: 1227 ccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggccgggt 1286
||||||||||||| ||||| | |||||||||| ||||||||||| ||| ||||||||||
Sbjct: 240 ccttgaggagcgtgacgcccgagtcctggaaggtcttgagcagctgcgccttggccgggt 181
Query: 1287 cggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccg 1346
|||| || || ||||||| |||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 180 cggagggggcggtgtcccggacgagcgccagggtggggtggccgagccgggcgctcgccg 121
Query: 1347 ccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctctt 1401
| ||||||||| |||| | ||| ||||| ||||||| ||| ||||||||||||||
Sbjct: 120 cgacgacgtgcttgccgatgtaacccgtcccgccgatcacaaggatcttgctctt 66
>gb|CB884134.1|CB884134 HZ58E24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ58E24
5-PRIME, mRNA sequence
Length = 464
Score = 345 bits (174), Expect = 3e-093
Identities = 327/378 (86%)
Strand = Plus / Minus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
|||||||||||||||||||||| ||| || ||||| |||||||| ||||||||||||||
Sbjct: 455 gatggacttggccggctccacggcgccggtacggtcgacgtccagcccgaactccgacgg 396
Query: 1084 gaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggc 1143
|||||||||||| ||||| |||||||||||||||||| ||| |||| | |||| |||||
Sbjct: 395 gaagaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcggc 336
Query: 1144 gatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccag 1203
||||||||||| || ||| ||||||||| ||||| || |||| || |||||||||||
Sbjct: 335 gatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcaccag 276
Query: 1204 gctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctctt 1263
||| | ||||||||||||||||||||||||||||| ||||| | |||||||||| ||||
Sbjct: 275 gctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtctt 216
Query: 1264 gagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggg 1323
||||||| ||| |||||||||||||| || || ||||||| |||||||||| ||||||
Sbjct: 215 gagcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcgccagggtggg 156
Query: 1324 gtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgac 1383
|||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| |||||||
Sbjct: 155 gtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccgat 96
Query: 1384 caccaggatcttgctctt 1401
||| ||||||||||||||
Sbjct: 95 cacaaggatcttgctctt 78
>gb|BI959822.1|BI959822 HVSMEn0021M05f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0021M05f,
mRNA sequence
Length = 682
Score = 335 bits (169), Expect = 2e-090
Identities = 376/441 (85%), Gaps = 3/441 (0%)
Strand = Plus / Minus
Query: 963 cgtaggtgtagggtatgcccgcggcctcggt-ggcgcggcggatgcccaccttggcgcct 1021
||||||||||||| ||| || | |||||| | ||| |||||||||||| ||||| | |
Sbjct: 498 cgtaggtgtaggggatgtcctc-gcctcgatgggcacggcggatgcccgccttgatggcg 440
Query: 1022 aggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgac 1081
| |||||||||||||||||||||| ||| || ||||| |||||||| ||||||||||||
Sbjct: 439 aagatggacttggccggctccacggcgccggtacggtcgacgtccagcccgaactccgac 380
Query: 1082 gggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcg 1141
|||||||||||||| ||||| |||||||||||||||||| ||| |||| | |||| |||
Sbjct: 379 gggaagaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcg 320
Query: 1142 gcgatctgcatcgatccgagcacggagatgaccacgtccg-cgcccttcaccgcgctcac 1200
||||||||||||| || ||| ||||||||| ||||| | | |||| || ||||||||
Sbjct: 319 gcgatctgcatcgcgcccagcgtggagatgacgacgtcggcctgccttaacggcgctcac 260
Query: 1201 caggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagct 1260
|||||| | ||||||||||||||||||||||||||||| ||||| | |||||||||| |
Sbjct: 259 caggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggt 200
Query: 1261 cttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggt 1320
|||||||||| ||| |||||||||||||| || || ||||||| |||||||||| |||
Sbjct: 199 cttgagcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcgccagggt 140
Query: 1321 ggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgcc 1380
||||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| |||||
Sbjct: 139 ggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgcc 80
Query: 1381 gaccaccaggatcttgctctt 1401
|| ||| ||||||||||||||
Sbjct: 79 gatcacaaggatcttgctctt 59
>gb|BE456103.3|BE456103 HVSMEg0019N01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0019N01f, mRNA sequence
Length = 597
Score = 335 bits (169), Expect = 2e-090
Identities = 371/439 (84%)
Strand = Plus / Minus
Query: 963 cgtaggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgccta 1022
||||||||||||| ||| || || ||||| |||| ||||||||||| ||||| || |
Sbjct: 499 cgtaggtgtaggggatgtcctcgccctcgatggcacggcggatgccngccttgatgcgaa 440
Query: 1023 ggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacg 1082
|||||||||||||||||||||| |||||| ||||| ||||| |||||||||||||
Sbjct: 439 agatggacttggccggctccacggcgcccgtacggtcgacgtcagccccgaactccgacg 380
Query: 1083 ggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
| ||||||||||| |||| |||||||||||||||||| ||| |||| | |||| ||||
Sbjct: 379 gnaagaacctcttcacgtgcccggcctccttgatggcggcgatgagcttggtctgctcgg 320
Query: 1143 cgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcacca 1202
|||||||||||| || ||| ||||||||| ||||| || |||| || ||||||||||
Sbjct: 319 cgatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcacca 260
Query: 1203 ggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctct 1262
|||| | ||||||||||||||||||||||||||||| ||||| | |||||||||| |||
Sbjct: 259 ggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtct 200
Query: 1263 tgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtgg 1322
|||||||| ||| |||||||||||||| || || ||||||| |||||||||| |||||
Sbjct: 199 tgagcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcgccagggtgg 140
Query: 1323 ggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccga 1382
||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| |||||||
Sbjct: 139 ggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccga 80
Query: 1383 ccaccaggatcttgctctt 1401
||| ||||||||||||||
Sbjct: 79 tcacaaggatcttgctctt 61
>gb|BI958818.1|BI958818 HVSMEn0016M04f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0016M04f,
mRNA sequence
Length = 712
Score = 325 bits (164), Expect = 2e-087
Identities = 324/376 (86%), Gaps = 1/376 (0%)
Strand = Plus / Minus
Query: 1027 ggacttggccggctccacgat-gcccgtgcggtccacgtccaggccgaactccgacggga 1085
||||||||||||||||||| ||| || ||||| |||||||| ||||||||||||||||
Sbjct: 431 ggacttggccggctccacgggcgccggtacggtcgacgtccagcccgaactccgacggga 372
Query: 1086 agaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggcga 1145
|||||||||| ||||| |||||||||||||||||| ||| |||| | |||| |||||||
Sbjct: 371 agaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcggcga 312
Query: 1146 tctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccaggc 1205
||||||||| || ||| ||||||||| ||||| || |||| || |||||||||||||
Sbjct: 311 tctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcaccaggc 252
Query: 1206 tagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttga 1265
| | ||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||
Sbjct: 251 tgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtcttga 192
Query: 1266 gcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggt 1325
||||| ||| |||||||||||||| || || ||||||| |||||||||| ||||||||
Sbjct: 191 gcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcgccagggtggggt 132
Query: 1326 ggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgacca 1385
|||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| ||||||| ||
Sbjct: 131 ggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccgatca 72
Query: 1386 ccaggatcttgctctt 1401
| ||||||||||||||
Sbjct: 71 caaggatcttgctctt 56
>gb|BI958642.1|BI958642 HVSMEn0016A18f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0016A18f,
mRNA sequence
Length = 700
Score = 323 bits (163), Expect = 9e-087
Identities = 371/439 (84%), Gaps = 1/439 (0%)
Strand = Plus / Minus
Query: 963 cgtaggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgccta 1022
||||||||||||| | | || || ||||| |||| || ||||||||| ||||| | | |
Sbjct: 489 cgtaggtgtagggcaagtcctcgccctcgatggcacgccggatgccccccttgatggcga 430
Query: 1023 ggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacg 1082
|||||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||
Sbjct: 429 agatggacttggccggctccacggcgccggtacggtcgacgtccagcccgaactccgacg 370
Query: 1083 ggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
||||||||||||| ||||| |||||||||||||||||| ||| |||| | |||| ||||
Sbjct: 369 ggaagaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcgg 310
Query: 1143 cgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcacca 1202
|||||||||||| || ||| ||||||||| ||||| || |||| || ||||||||||
Sbjct: 309 cgatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcacca 250
Query: 1203 ggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctct 1262
|||| | ||||||||||||||||||||||||||||| ||||| | |||||||||| |||
Sbjct: 249 ggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtct 190
Query: 1263 tgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtgg 1322
|||||||| ||| | |||||||||| || || ||||||| |||||||||| |||||
Sbjct: 189 tgagcagctgcgc-ccgcccgggtcggagggggcggtgtcccggacgagcgccagggtgg 131
Query: 1323 ggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccga 1382
||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| |||||||
Sbjct: 130 ggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccga 71
Query: 1383 ccaccaggatcttgctctt 1401
||| ||||||||||||||
Sbjct: 70 tcacaaggatcttgctctt 52
>gb|BI960226.1|BI960226 HVSMEn0023M17f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0023M17f,
mRNA sequence
Length = 651
Score = 315 bits (159), Expect = 2e-084
Identities = 369/439 (84%)
Strand = Plus / Minus
Query: 963 cgtaggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgccta 1022
||||||||||||| ||| || || ||||| |||| |||||||||||| ||||| | | |
Sbjct: 502 cgtaggtgtaggggatgtcctcgccctcgatggcacggcggatgcccgccttgatggcga 443
Query: 1023 ggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacg 1082
|||||||||||||||||||||| ||| || |||| |||||||| |||||||||||||
Sbjct: 442 agatggacttggccggctccacggcgccggtacggtagacgtccagcccgaactccgacg 383
Query: 1083 ggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
||||||||||||| ||||| |||||||| |||||||| ||| |||| | |||| ||||
Sbjct: 382 ggaagaacctcttcacgttgccggcctctatgatggcggcgatgagcttggtctgctcgg 323
Query: 1143 cgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcacca 1202
|||| ||||||| || ||| ||||||||| ||||| || | || || ||||||||||
Sbjct: 322 cgatatgcatcgcgcccagcgtggagatgacgacgtcggccgcgttaacggcgctcacca 263
Query: 1203 ggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctct 1262
|||| | ||||||||||||||||||||||||||||| ||||| | |||||||||| |||
Sbjct: 262 ggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtct 203
Query: 1263 tgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtgg 1322
|||||||| ||| |||||||||||||| ||| || ||||| |||||||||| |||||
Sbjct: 202 tgagcagctgcgccttggccgggtcggagggccccccgtcccggacgagcgccagggtgg 143
Query: 1323 ggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccga 1382
||||||| ||||| ||||||||||| | ||||||| |||| | ||| ||||| |||||||
Sbjct: 142 ggtggccgagccgggcgctcgccgcgaggacgtgcttgccgatgtaacccgtcccgccga 83
Query: 1383 ccaccaggatcttgctctt 1401
||| ||||||||||||||
Sbjct: 82 tcacaaggatcttgctctt 64
>gb|BI960525.1|BI960525 HVSMEn0024O16f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0024O16f,
mRNA sequence
Length = 685
Score = 313 bits (158), Expect = 9e-084
Identities = 346/409 (84%)
Strand = Plus / Minus
Query: 993 tggcgcggcggatgcccaccttggcgcctaggatggacttggccggctccacgatgcccg 1052
|||| |||||||||||| ||||| | | | |||||||||||||||||||||| ||| |
Sbjct: 473 tggcacggcggatgcccgccttgatggcgaagatggacttggccggctccacggcgccgg 414
Query: 1053 tgcggtccacgtccaggccgaactccgacgggaagaacctcttgacgtttccggcctcct 1112
| |||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 413 tacggtngacgtccagcccgaactccgacgggaagaacctcttcacgttgccggcctcct 354
Query: 1113 tgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagcacggagatga 1172
|||||||| ||| |||| | |||| |||||||||||||||| || ||| ||||||||
Sbjct: 353 tgatggcggcgatgagcttggtctgctcggcgatctgcatcgcgcccagcgtggagatga 294
Query: 1173 ccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacaggtcgcccttga 1232
| ||||| || |||| || |||||||||||||| | ||||||||||||||||||||||
Sbjct: 293 cgacgtcggccgccttaacggcgctcaccaggctgccgtggtcgtacaggtcgcccttga 234
Query: 1233 ggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggccgggtcggacg 1292
||||||| ||||| | |||||||||| ||||||||||| ||| |||||||| || |
Sbjct: 233 ggagcgtgacgcccgagtcctggaaggtcttgagcagctgcgccttggccggctccaccc 174
Query: 1293 gcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccgccacga 1352
| || ||||||| |||||||||| |||||||||||| ||||| ||||||||||| ||||
Sbjct: 173 gggcggtgtcccggacgagcgccagggtggggtggccgagccgggcgctcgccgcgacga 114
Query: 1353 cgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctctt 1401
||||| |||| | ||| ||||| ||||||| ||| ||||||||||||||
Sbjct: 113 cgtgcttgccgatgtaacccgtcccgccgatcacaaggatcttgctctt 65
>gb|BI956632.1|BI956632 HVSMEn0004H03f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0004H03f,
mRNA sequence
Length = 851
Score = 301 bits (152), Expect = 3e-080
Identities = 296/344 (86%)
Strand = Plus / Minus
Query: 1055 cggtccacgtccaggccgaactccgacgggaagaacctcttgacgtttccggcctccttg 1114
||||| |||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct: 357 cggtcgacgtccagcccgaaccccgacgggaagaacctcttcacgttgccggcctccttg 298
Query: 1115 atggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagcacggagatgacc 1174
|||||| ||| |||| | |||| |||||||||||||||| || ||| |||||||||
Sbjct: 297 atggcggcgatgagcttggtctgctcggcgatctgcatcgcgcccagcgtggagatgacg 238
Query: 1175 acgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacaggtcgcccttgagg 1234
||||| || |||| || |||||||||||||| | ||||||||||||||||||||||||
Sbjct: 237 acgtcggccgccttaacggcgctcaccaggctgccgtggtcgtacaggtcgcccttgagg 178
Query: 1235 agcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggccgggtcggacggc 1294
||||| ||||| | |||||||||| ||||||||||| ||| |||||||||||||| ||
Sbjct: 177 agcgtgacgcccgagtcctggaaggtcttgagcagctgcgccttggccgggtcggagggg 118
Query: 1295 gccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccgccacgacg 1354
|| ||||||| |||||||||| |||||||||||| ||||| ||||||||||| ||||||
Sbjct: 117 gcggtgtcccggacgagcgccagggtggggtggccgagccgggcgctcgccgcgacgacg 58
Query: 1355 tgcctgcccaggtaccccgtgccgccgaccaccaggatcttgct 1398
||| |||| | ||| ||||| ||||||| ||| |||||||||||
Sbjct: 57 tgcttgccgatgtaacccgtcccgccgatcacaaggatcttgct 14
>gb|CB884133.1|CB884133 HZ58B01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ58B01
5-PRIME, mRNA sequence
Length = 411
Score = 301 bits (152), Expect = 3e-080
Identities = 287/332 (86%)
Strand = Plus / Minus
Query: 1070 ccgaactccgacgggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagc 1129
|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||||
Sbjct: 409 ccgaactccgacgggaagaacctcttcacgttgccggcctccttgatggcggcgatgagc 350
Query: 1130 cggctctggtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttc 1189
| |||| |||||||||||||||| || ||| ||||||||| ||||| || ||||
Sbjct: 349 ttggtctgctcggcgatctgcatcgcgcccagcgtggagatgacgacgtcggccgcctta 290
Query: 1190 accgcgctcaccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcg 1249
|| |||||||||||||| | ||||||||||||||||||||||||||||| ||||| | |
Sbjct: 289 acggcgctcaccaggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgag 230
Query: 1250 tcctggaagctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacg 1309
||||||||| ||||||||||| ||| |||||||||||||| || || ||||||| ||||
Sbjct: 229 tcctggaaggtcttgagcagctgcgccttggccgggtcggagggggcggtgtcccggacg 170
Query: 1310 agcgccgaggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtac 1369
|||||| |||||||||||| ||||| ||||||||||| ||||||||| |||| | |||
Sbjct: 169 agcgccagggtggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaa 110
Query: 1370 cccgtgccgccgaccaccaggatcttgctctt 1401
||||| ||||||| ||| ||||||||||||||
Sbjct: 109 cccgtcccgccgatcacaaggatcttgctctt 78
>gb|BF616380.2|BF616380 HVSMEc0007A22f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0007A22f, mRNA sequence
Length = 606
Score = 291 bits (147), Expect = 3e-077
Identities = 321/378 (84%), Gaps = 1/378 (0%)
Strand = Plus / Minus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
||||||| |||| ||||||||| ||| || ||||| |||||||||||||||||||||||
Sbjct: 421 gatggacatggcgggctccacggcgccggtacggtcgacgtccaggccgaactccgacgg 362
Query: 1084 gaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggc 1143
|||||||| || ||||| ||||||||||||||| || ||| |||| | || | |||||
Sbjct: 361 aaagaaccttttcacgttgccggcctccttgatgccgacgatgagcttggtc-gctcggc 303
Query: 1144 gatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccag 1203
||| ||||||| || ||| ||||||||| ||||| || |||| || |||||||||||
Sbjct: 302 gatatgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcaccag 243
Query: 1204 gctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctctt 1263
||| | ||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct: 242 gctgccgtggtcgtacaggtcgcccttgaggagcgtcacgcccgagtcctggaaggtctt 183
Query: 1264 gagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggg 1323
|||||| | ||| |||||||||||||| || || ||||||| ||||||||| ||||||
Sbjct: 182 gagcagtggcgcattggccgggtcggagggggcggtgtcccgnacgagcgccagggtggg 123
Query: 1324 gtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgac 1383
|||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| |||||||
Sbjct: 122 gtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgccgat 63
Query: 1384 caccaggatcttgctctt 1401
||| ||||||||||||||
Sbjct: 62 cacaaggatcttgctctt 45
>gb|BI959118.1|BI959118 HVSMEn0018E05f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0018E05f,
mRNA sequence
Length = 689
Score = 291 bits (147), Expect = 3e-077
Identities = 297/347 (85%)
Strand = Plus / Minus
Query: 1055 cggtccacgtccaggccgaactccgacgggaagaacctcttgacgtttccggcctccttg 1114
||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 408 cggtcgacgtccagcccgaactccgacgggaagaacctcttcacgttcgcggcctccttg 349
Query: 1115 atggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagcacggagatgacc 1174
|||||| ||| |||| | |||| |||||||||||||||| || ||| |||||||||
Sbjct: 348 atggcggcgatgagcttggtctgctcggcgatctgcatcgcgcccagcgtggagatgacg 289
Query: 1175 acgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacaggtcgcccttgagg 1234
||||| || |||| || |||||||||||||| | ||||||||||||||||||||||||
Sbjct: 288 acgtcggccgccttaacggcgctcaccaggctgccgtggtcgtacaggtcgcccttgagg 229
Query: 1235 agcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggccgggtcggacggc 1294
||||| ||||| | |||||||||| ||||||||||| ||| | | |||||||||| ||
Sbjct: 228 agcgtgacgcccgagtcctggaaggtcttgagcagctgcgcctcgcccgggtcggagggg 169
Query: 1295 gccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccgccacgacg 1354
|| ||||||| |||||||||| |||||||||||| ||||| ||||||||||| ||||||
Sbjct: 168 gcggtgtcccggacgagcgccagggtggggtggccgagccgggcgctcgccgcgacgacg 109
Query: 1355 tgcctgcccaggtaccccgtgccgccgaccaccaggatcttgctctt 1401
||| |||| | ||| ||||| ||||||| ||| ||||||||||||||
Sbjct: 108 tgcttgccgatgtaacccgtcccgccgatcacaaggatcttgctctt 62
>gb|BI959197.1|BI959197 HVSMEn0018J22f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0018J22f,
mRNA sequence
Length = 646
Score = 246 bits (124), Expect = 2e-063
Identities = 371/454 (81%)
Strand = Plus / Minus
Query: 816 ccgtgtacgtggcgatgtcgccctcctccacgaacaccgccttggtgtcgccgtcgccga 875
||||||||| | |||||||| |||| || ||||| || ||||||| |||||||||||||
Sbjct: 643 ccgtgtacgcgccgatgtcggcctcgtcgacgaagacgaccttggtctcgccgtcgccga 584
Query: 876 ggacgaccgccttgtccgcgggcgggccgggggcgaggacctgcccgaccttggggaggc 935
||| ||| | ||||| | || || | |||| |||||||||||||| |||||||
Sbjct: 583 ggatgacgacgttgtcggttgggggcgcaggggagaggacctgcccgatggtggggagcg 524
Query: 936 cgaagcccgcgaagaagccggccacggcgtaggtgtagggtatgcccgcggcctcggtgg 995
| | || |||||| || |||||| ||||||||||||| ||| || || ||||| |||
Sbjct: 523 agtacccggcgaagtagttggccaccacgtaggtgtaggggatgtcctcgccctcgatgg 464
Query: 996 cgcggcggatgcccaccttggcgcctaggatggacttggccggctccacgatgcccgtgc 1055
| |||||||||||| ||||| | | | |||||||||||||||||||||| ||| || |
Sbjct: 463 cacggcggatgcccgccttgatggcgaagatggacttggccggctccacggcgccggtac 404
Query: 1056 ggtccacgtccaggccgaactccgacgggaagaacctcttgacgtttccggcctccttga 1115
||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 403 ggtngacgtccagcccgaactccgacgggaagaacctcttcacgttgccggcctccttga 344
Query: 1116 tggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagcacggagatgacca 1175
||||| ||| |||| | |||| |||||||||||||||| || ||| ||||||||| |
Sbjct: 343 tggcggcgatgagcttggtctgctcggcgatctgcatcgcgcccagcgtggagatgacga 284
Query: 1176 cgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacaggtcgcccttgagga 1235
|||| || |||| || |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 283 cgtcggccgccttaacggcgctcaccaggctgccgtggtcgtacaggtcgcccttgagga 224
Query: 1236 gcgtcacgccggcgtcctggaagctcttgagcag 1269
|||| ||||| | ||| ||||| | ||||||||
Sbjct: 223 gcgtgacgcccgagtctnggaaggttttgagcag 190
Score = 103 bits (52), Expect = 2e-020
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 1298 gtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccgccacgacgtgc 1357
||||||| |||||||||| |||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 161 gtgtcccggacgagcgccagggtggggtggccgagccgggcgctcgccgcgacgacgtgc 102
Query: 1358 ctgcccaggtaccccgtgccgccgaccaccaggatcttgctctt 1401
|||| | ||| ||||| ||||||| ||| ||||||||||||||
Sbjct: 101 ttgccgatgtaacccgtcccgccgatcacaaggatcttgctctt 58
>gb|BI957292.1|BI957292 HVSMEn0008L02f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0008L02f,
mRNA sequence
Length = 593
Score = 240 bits (121), Expect = 1e-061
Identities = 252/296 (85%)
Strand = Plus / Minus
Query: 1103 ccggcctccttgatggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagc 1162
|||||||||||||||||| ||| |||| | |||| |||||||||||||||| || |||
Sbjct: 350 ccggcctccttgatggcggcgatgagcttggtctgctcggcgatctgcatcgcgcccagc 291
Query: 1163 acggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacagg 1222
||||||||| ||||| || |||| || |||||||||||||| | ||||||||||||
Sbjct: 290 gtggagatgacgacgtcggccgccttaacggcgctcaccaggctgccgtggtcgtacagg 231
Query: 1223 tcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagcgccgctttggcc 1282
||||||||||||||||| ||||| | |||||||||| ||||||||||| ||| ||||||
Sbjct: 230 tcgcccttgaggagcgtgacgcccgagtcctggaaggtcttgagcagctgcgccttggcc 171
Query: 1283 gggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctc 1342
|||||||| || | ||||||| |||||||||| |||||||||||| ||||| ||||||
Sbjct: 170 gggtcggaggggncggtgtcccggacgagcgccagggtggggtggccgagccgggcgctc 111
Query: 1343 gccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccaggatcttgct 1398
||||| ||||||||| |||| | ||| ||||| ||||||| ||| |||||||||||
Sbjct: 110 gccgcgacgacgtgcttgccgatgtaacccgtcccgccgatcacaaggatcttgct 55
>gb|BI958722.1|BI958722 HVSMEn0016F18f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0016F18f,
mRNA sequence
Length = 650
Score = 234 bits (118), Expect = 7e-060
Identities = 214/246 (86%)
Strand = Plus / Minus
Query: 1024 gatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacgg 1083
|||||||||||||||||||||| ||| || ||||| |||||||| ||||||||||||||
Sbjct: 444 gatggacttggccggctccacggcgccggtacggtcgacgtccagcccgaactccgacgg 385
Query: 1084 gaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcggc 1143
|||||||||||| ||||| |||||||||||||||||| ||| |||| | |||| |||||
Sbjct: 384 gaagaacctcttcacgttgccggcctccttgatggcggcgatgagcttggtctgctcggc 325
Query: 1144 gatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcaccag 1203
||||||||||| || ||| ||||||||| ||||| || |||| || |||||||||||
Sbjct: 324 gatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcaccag 265
Query: 1204 gctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctctt 1263
||| | ||||||||||||||||||||||||||||| ||||| | |||||||||| ||||
Sbjct: 264 gctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggtctt 205
Query: 1264 gagcag 1269
||||||
Sbjct: 204 gagcag 199
>gb|BI956898.1|BI956898 HVSMEn0005O18f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0005O18f,
mRNA sequence
Length = 827
Score = 232 bits (117), Expect = 3e-059
Identities = 285/342 (83%)
Strand = Plus / Minus
Query: 1057 gtccacgtccaggccgaactccgacgggaagaacctcttgacgtttccggcctccttgat 1116
|||| ||||||| || ||||||| |||||||||||| || ||||| ||||||||||||||
Sbjct: 406 gtccccgtccagccccaactccgccgggaagaacctgttcacgttgccggcctccttgat 347
Query: 1117 ggcgtcgacgagccggctctggtcggcgatctgcatcgatccgagcacggagatgaccac 1176
|||| ||| |||| | | ||||||||||| ||||||| || ||| |||||||| ||
Sbjct: 346 ggcgccgatgagcttggtntggtcggcgatttgcatcgcgcccagcgtggagatgangac 287
Query: 1177 gtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacaggtcgcccttgaggag 1236
||| || |||| || |||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 286 gtcggccgccttaacggcgctcaccaggctgccgtggtcgtacaggtcgcccttgaggag 227
Query: 1237 cgtcacgccggcgtcctggaagctcttgagcagcgccgctttggccgggtcggacggcgc 1296
||| ||||| | |||||||||| ||||||||||| ||| |||||||||| || | ||
Sbjct: 226 cgtgacgcccgagtcctggaaggtcttgagcagctgcgccttggccgggtnggccccggc 167
Query: 1297 cgtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccgccacgacgtg 1356
|| ||| |||||||||| |||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 166 ggtcccccggacgagcgccagggtggggtggccgagccgggcgctcgccgcgacgacgtg 107
Query: 1357 cctgcccaggtaccccgtgccgccgaccaccaggatcttgct 1398
| |||| | ||| ||||| ||||||| ||| |||||||||||
Sbjct: 106 cttgccgatgtaacccgtcccgccgatcacaaggatcttgct 65
>gb|BI958199.1|BI958199 HVSMEn0013N11f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0013N11f,
mRNA sequence
Length = 922
Score = 232 bits (117), Expect = 3e-059
Identities = 270/321 (84%)
Strand = Plus / Minus
Query: 1081 cgggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtc 1140
|||||||||||| || ||||| |||||||||| ||||||| | | |||| | | || ||
Sbjct: 383 cgggaagaacctgttcacgttgccggcctcctcgatggcgcccatgagctcggtgtgctc 324
Query: 1141 ggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcac 1200
|||||||||||||| || ||| ||||||||| ||||| || |||| || ||||||||
Sbjct: 323 ggcgatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctcac 264
Query: 1201 caggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagct 1260
|||||| | ||||||||||||||||||||||||||||| ||||| | |||||||||| |
Sbjct: 263 caggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaaggt 204
Query: 1261 cttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggt 1320
|||||||||| ||| ||| |||| ||||| || || ||||||| |||||||||| |||
Sbjct: 203 cttgagcagctgcgccttgcccggctcggagggggcggtgtcccggacgagcgccagggt 144
Query: 1321 ggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgcc 1380
||||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| |||||
Sbjct: 143 ggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgcc 84
Query: 1381 gaccaccaggatcttgctctt 1401
|| ||| ||||||||||||||
Sbjct: 83 gatcacaaggatcttgctctt 63
>gb|CB884129.1|CB884129 HZ56F09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56F09
5-PRIME, mRNA sequence
Length = 343
Score = 230 bits (116), Expect = 1e-058
Identities = 230/268 (85%)
Strand = Plus / Minus
Query: 1134 tctggtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccg 1193
|||| |||||||||||||||| || ||| ||||||||| ||||| || |||| || |
Sbjct: 335 tctgctcggcgatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacgg 276
Query: 1194 cgctcaccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcct 1253
||||||||||||| | ||||||||||||||||||||||||||||| ||||| | |||||
Sbjct: 275 cgctcaccaggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcct 216
Query: 1254 ggaagctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcg 1313
||||| ||||||||||| ||| |||||||||||||| || || ||||||| ||||||||
Sbjct: 215 ggaaggtcttgagcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcg 156
Query: 1314 ccgaggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccg 1373
|| |||||||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||
Sbjct: 155 ccagggtggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccg 96
Query: 1374 tgccgccgaccaccaggatcttgctctt 1401
| ||||||| ||| ||||||||||||||
Sbjct: 95 tcccgccgatcacaaggatcttgctctt 68
>gb|BI950646.1|BI950646 HVSMEl0021P05f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0021P05f, mRNA sequence
Length = 547
Score = 222 bits (112), Expect = 3e-056
Identities = 267/319 (83%)
Strand = Plus / Minus
Query: 1080 acgggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggt 1139
||||||||||||| || |||| |||||||||||||||||| ||| |||| | |||| |
Sbjct: 386 acgggaagaacctgttcacgtggccggcctccttgatggcggcgatgagcttggtctgct 327
Query: 1140 cggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctca 1199
||||||| ||||||| || ||| |||||||| ||||| || |||| || |||||||
Sbjct: 326 cggcgatatgcatcgcgcccagcgtggagatgangacgtcggccgccttaacggcgctca 267
Query: 1200 ccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagc 1259
||||| | | |||| |||||||||||||||||||||||| ||||| | ||||||||||
Sbjct: 266 ccaggttgccgtggttgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaagg 207
Query: 1260 tcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgagg 1319
||||||||||| ||| |||||||||||||| || | ||||||| |||||||||| ||
Sbjct: 206 tcttgagcagctgcgccttggccgggtcggaggggtcggtgtcccggacgagcgccaggg 147
Query: 1320 tggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgc 1379
|||||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| ||||
Sbjct: 146 tggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgc 87
Query: 1380 cgaccaccaggatcttgct 1398
||| ||| |||||||||||
Sbjct: 86 cgatcacaaggatcttgct 68
>gb|BI957029.1|BI957029 HVSMEn0007B04f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0007B04f,
mRNA sequence
Length = 854
Score = 216 bits (109), Expect = 2e-054
Identities = 269/323 (83%)
Strand = Plus / Minus
Query: 1076 tccgacgggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctc 1135
|||| ||||||||||||||||||||| ||||||||||||||||| ||| |||| | ||
Sbjct: 387 tccggcgggaagaacctcttgacgttgtcggcctccttgatggcggcgatgagcttggtc 328
Query: 1136 tggtcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcg 1195
|| |||||||||||||| | || ||| ||||||||| ||||| || |||| | |||
Sbjct: 327 tgctcggcgatctgcatagcgcccagcgtggagatgacgacgtcggccgccttaatggcg 268
Query: 1196 ctcaccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctgg 1255
|||||||||| | ||||||||||||| | | |||||||| || ||||| | |||||||
Sbjct: 267 atcaccaggctgccgtggtcgtacaggttgncnttgaggagggtgacgcccgagtcctgg 208
Query: 1256 aagctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgcc 1315
||| | ||||||||| ||| |||||||||||||| || || ||||||| ||||||||||
Sbjct: 207 aaggtattgagcagctgcgccttggccgggtcggagggggcggtgtcccggacgagcgcc 148
Query: 1316 gaggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtg 1375
|||||||||||| ||||| ||||||||||| ||||||||| |||| | ||| |||||
Sbjct: 147 agggtggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtc 88
Query: 1376 ccgccgaccaccaggatcttgct 1398
||||||| ||| |||||||||||
Sbjct: 87 ccgccgatcacaaggatcttgct 65
>gb|AW983065.2|AW983065 HVSMEg0004P15f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004P15f, mRNA sequence
Length = 612
Score = 192 bits (97), Expect = 2e-047
Identities = 181/209 (86%)
Strand = Plus / Minus
Query: 1193 gcgctcaccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcc 1252
|||||||||||||| | ||||||||||||||||||||||||||||| ||||| | ||||
Sbjct: 269 gcgctcaccaggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcc 210
Query: 1253 tggaagctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagc 1312
|| ||| ||||||||||| ||| |||||||||||||| || | ||||||| |||||||
Sbjct: 209 tgaaaggtcttgagcagctgcgccttggccgggtcggaggggccggtgtcccggacgagc 150
Query: 1313 gccgaggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtacccc 1372
||| |||||||||||| ||||| ||||||||||| ||||||||| |||| | ||| |||
Sbjct: 149 gccagggtggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaaccc 90
Query: 1373 gtgccgccgaccaccaggatcttgctctt 1401
|| ||||||| ||| ||||||||||||||
Sbjct: 89 gtcccgccgatcacaaggatcttgctctt 61
>gb|BI960244.1|BI960244 HVSMEn0023O09f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0023O09f,
mRNA sequence
Length = 746
Score = 190 bits (96), Expect = 9e-047
Identities = 255/308 (82%)
Strand = Plus / Minus
Query: 963 cgtaggtgtagggtatgcccgcggcctcggtggcgcggcggatgcccaccttggcgccta 1022
||||||||||||| ||| || || ||||| |||| ||||| ||| || ||||| | | |
Sbjct: 561 cgtaggtgtaggggatgtcctcgccctcgatggcacggcgtatgtcctccttgatggcga 502
Query: 1023 ggatggacttggccggctccacgatgcccgtgcggtccacgtccaggccgaactccgacg 1082
|||||||||||||||||||||| ||| || |||| |||||||| |||||||||||||
Sbjct: 501 agatggacttggccggctccacggcgccggtacggtagacgtccagcccgaactccgacg 442
Query: 1083 ggaagaacctcttgacgtttccggcctccttgatggcgtcgacgagccggctctggtcgg 1142
||||||||||||| ||||| |||||||| ||||||||| ||| |||| | |||| ||||
Sbjct: 441 ggaagaacctcttcacgttgccggcctcgttgatggcggcgatgagcttggtctgctcgg 382
Query: 1143 cgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctcacca 1202
|||||||||||| || ||| | |||||| ||||| || |||| || ||||||||||
Sbjct: 381 cgatctgcatcgcgcccagcgtgaagatgaagacgtcggccgccttaacggcgctcacca 322
Query: 1203 ggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctct 1262
|||| | |||||| |||||||||| || |||||||| ||||| | |||||||||| |||
Sbjct: 321 ggctgccgtggtcggacaggtcgccttttaggagcgtgacgcccgagtcctggaaggtct 262
Query: 1263 tgagcagc 1270
||||||||
Sbjct: 261 tgagcagc 254
Score = 103 bits (52), Expect = 2e-020
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 1298 gtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccgccacgacgtgc 1357
||||||| |||||||||| |||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 226 gtgtcccggacgagcgccagggtggggtggccgagccgggcgctcgccgcgacgacgtgc 167
Query: 1358 ctgcccaggtaccccgtgccgccgaccaccaggatcttgctctt 1401
|||| | ||| ||||| ||||||| ||| ||||||||||||||
Sbjct: 166 ttgccgatgtaacccgtcccgccgatcacaaggatcttgctctt 123
>gb|BI957783.1|BI957783 HVSMEn0011F01f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0011F01f,
mRNA sequence
Length = 930
Score = 178 bits (90), Expect = 3e-043
Identities = 219/262 (83%)
Strand = Plus / Minus
Query: 1140 cggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctca 1199
||||||||||||||| || ||| ||||||||| ||||| || |||| || |||||||
Sbjct: 315 cggcgatctgcatcgcgcccagcgtggagatgacgacgtcggccgccttaacggcgctca 256
Query: 1200 ccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagc 1259
||||||| | ||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct: 255 ccaggctgccgtggtcgtacaggtcgcccttgaggagcgtgacgcccgagtcctggaagg 196
Query: 1260 tcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgagg 1319
||||||||||| |||| ||| |||| || || ||||||| |||||||||| ||
Sbjct: 195 tcttgagcagctgcgctcgccccgccccggagggggcggtgtcccggacgagcgccaggg 136
Query: 1320 tggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgc 1379
|||||||||| ||||| ||||||||||| ||||||||| |||| | ||| ||||| ||||
Sbjct: 135 tggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaacccgtcccgc 76
Query: 1380 cgaccaccaggatcttgctctt 1401
||| ||| ||||||||||||||
Sbjct: 75 cgatcacaaggatcttgctctt 54
Score = 42.1 bits (21), Expect = 0.050
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1081 cgggaagaacctcttgacgtttccggcctccttgatg 1117
||||||||||||||| |||| |||||||||| ||||
Sbjct: 375 cgggaagaacctcttcacgtcgccggcctcctcgatg 339
>gb|BI957384.1|BI957384 HVSMEn0009E09f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0009E09f,
mRNA sequence
Length = 675
Score = 170 bits (86), Expect = 8e-041
Identities = 173/202 (85%)
Strand = Plus / Minus
Query: 1193 gcgctcaccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcc 1252
|||||||||||||| | |||| ||||||||||||||||||||||| | |||| | |||
Sbjct: 219 gcgctcaccaggctgccgtggttgtacaggtcgcccttgaggagcgccccgcccgagtcg 160
Query: 1253 tggaagctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagc 1312
|||||| ||||||||||| ||| |||||||||||||| || || ||||||| |||||||
Sbjct: 159 tggaaggtcttgagcagctgcgccttggccgggtcggagggggcggtgtcccggacgagc 100
Query: 1313 gccgaggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtacccc 1372
||| |||||||||||| ||||| ||||||||||| ||||||||| |||| | ||| |||
Sbjct: 99 gccagggtggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaaccc 40
Query: 1373 gtgccgccgaccaccaggatct 1394
|| ||||||| ||| |||||||
Sbjct: 39 gtcccgccgatcacaaggatct 18
>gb|BI958092.1|BI958092 HVSMEn0013F05f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0013F05f,
mRNA sequence
Length = 852
Score = 168 bits (85), Expect = 3e-040
Identities = 178/209 (85%)
Strand = Plus / Minus
Query: 1193 gcgctcaccaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcc 1252
|||||||||||||| |||||| ||||||||||| |||||||||| ||||| | ||||
Sbjct: 271 gcgctcaccaggctgcggtggtcgcacaggtcgcccctgaggagcgtgacgcccgagtcc 212
Query: 1253 tggaagctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacgagc 1312
|||||| ||||||||||| ||| |||||||||||||| || | || |||| |||||||
Sbjct: 211 tggaaggtcttgagcagctgcgccttggccgggtcggaggggccggtctcccggacgagc 152
Query: 1313 gccgaggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtacccc 1372
||| |||||||||||| ||||| ||||||||||| ||||||||| |||| | ||| |||
Sbjct: 151 gccagggtggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaaccc 92
Query: 1373 gtgccgccgaccaccaggatcttgctctt 1401
|| ||||||| ||| ||||||||||||||
Sbjct: 91 gtcccgccgatcacaaggatcttgctctt 63
>gb|BI956210.1|BI956210 HVSMEn0001C12f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0001C12f,
mRNA sequence
Length = 603
Score = 147 bits (74), Expect = 1e-033
Identities = 155/183 (84%)
Strand = Plus / Minus
Query: 1211 tggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcagc 1270
||||||||||||||||| ||||||||||| | ||| | |||||||||| ||||||||||
Sbjct: 252 tggtcgtacaggtcgcctttgaggagcgtgaggccngagtcctggaaggtcttgagcagn 193
Query: 1271 gccgctttggccgggtcggacggcgccgtgtccctgacgagcgccgaggtggggtggccc 1330
||| |||||||||||||| || | ||||||| |||||||||| ||||||||||||
Sbjct: 192 tgcgccttggccgggtcggaggggccggtgtcccggacgagcgccagggtggggtggccg 133
Query: 1331 agccgcgcgctcgccgccacgacgtgcctgcccaggtaccccgtgccgccgaccaccagg 1390
||||| ||||||||||| ||||||||| ||| | ||| ||||| ||||||| ||| |||
Sbjct: 132 agccgggcgctcgccgcgacgacgtgcttgcngatgtaacccgtcccgccgatcacaagg 73
Query: 1391 atc 1393
|||
Sbjct: 72 atc 70
>gb|CB884117.1|CB884117 HZ50G23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50G23
5-PRIME, mRNA sequence
Length = 228
Score = 119 bits (60), Expect = 3e-025
Identities = 130/152 (85%), Gaps = 1/152 (0%)
Strand = Plus / Minus
Query: 1250 tcctggaagctcttgagcagcgccgctttggccgggtcggacggcgccgtgtccctgacg 1309
||||||||| ||||||||||| ||| |||||||||||| || || ||||||| ||||
Sbjct: 223 tcctggaaggtcttgagcagctgcgcaa-ggccgggtcggagggggcggtgtcccggacg 165
Query: 1310 agcgccgaggtggggtggcccagccgcgcgctcgccgccacgacgtgcctgcccaggtac 1369
|||||| |||||||||||| ||||| ||||||||||| ||||||||| |||| | |||
Sbjct: 164 agcgccagggtggggtggccgagccgggcgctcgccgcgacgacgtgcttgccgatgtaa 105
Query: 1370 cccgtgccgccgaccaccaggatcttgctctt 1401
||||| ||||||| ||| ||||||||||||||
Sbjct: 104 cccgtcccgccgatcacaaggatcttgctctt 73
>gb|BE231158.2|BE231158 HVSMEg0017C20f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017C20f, mRNA sequence
Length = 480
Score = 111 bits (56), Expect = 7e-023
Identities = 101/116 (87%)
Strand = Plus / Minus
Query: 607 cgcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgcttgag 666
|||||||||||||| | ||||||||||| ||||| |||| ||||||||||||||| ||
Sbjct: 116 cgcgtgcccgatcgagaagatgatgttcatcgggattggcgcctcttggatctgcttcag 57
Query: 667 cacggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctccc 722
||||| ||||| || |||||| ||| | |||||||||||||||||||||||||||
Sbjct: 56 aacggcgtcctcggggacgtacaccctctggaacgtcttgccggtcttcttctccc 1
Score = 65.9 bits (33), Expect = 3e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 506 tcgtcgacggtggtgtacttgacatccgggtacagttcgctggcgtccacccc 558
||||||||||||||||||||||| || |||||||| ||||| || ||||||||
Sbjct: 217 tcgtcgacggtggtgtacttgacgtcagggtacagctcgctcgcctccacccc 165
>gb|BI958687.1|BI958687 HVSMEn0016D18f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0016D18f,
mRNA sequence
Length = 660
Score = 103 bits (52), Expect = 2e-020
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 1298 gtgtccctgacgagcgccgaggtggggtggcccagccgcgcgctcgccgccacgacgtgc 1357
||||||| |||||||||| |||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 163 gtgtcccggacgagcgccagggtggggtggccgagccgggcgctcgccgcgacgacgtgc 104
Query: 1358 ctgcccaggtaccccgtgccgccgaccaccaggatcttgctctt 1401
|||| | ||| ||||| ||||||| ||| ||||||||||||||
Sbjct: 103 ttgccgatgtaacccgtcccgccgatcacaaggatcttgctctt 60
Score = 73.8 bits (37), Expect = 1e-011
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 1139 tcggcgatctgcatcgatccgagcacggagatgaccacgtccgcgcccttcaccgcgctc 1198
|||||||||||||||| || ||| ||||||||| |||| || |||| | ||||||
Sbjct: 322 tcggcgatctgcatcgcgcccagcgtggagatgacgacgttggccgccttaanggcgctc 263
Query: 1199 accaggctagcctggtcgtacaggtcgcccttgaggagcgtcacgccggcgtcctggaag 1258
|||||| | | |||| ||||||||||||||||||||| || ||||| | ||| ||||||
Sbjct: 262 accaggttgccgtggtagtacaggtcgcccttgaggagtgtgacgccngagtcttggaag 203
Query: 1259 ctcttgagcag 1269
||||||||||
Sbjct: 202 gtcttgagcag 192
>gb|BI960189.1|BI960189 HVSMEn0023K03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023K03f, mRNA sequence
Length = 626
Score = 95.6 bits (48), Expect = 4e-018
Identities = 114/136 (83%)
Strand = Plus / Plus
Query: 607 cgcgtgcccgatcgccaggatgatgttcagagggatcggcgactcttggatctgcttgag 666
|||||||||||||| | |||||||||| ||||| ||| ||||||||||||||| |
Sbjct: 304 cgcgtgcccgatcgaaaaaatgatgttcatcgggattggcccctcttggatctgcttcat 363
Query: 667 cacggcttcctccggcacgtactcccgccggaacgtcttgccggtcttcttctcccacag 726
||||| ||||| || |||||| ||| | ||||||| ||| |||||||||||||||||||
Sbjct: 364 aacggcgtcctctgggacgtacaccctctggaacgttttggcggtcttcttctcccacag 423
Query: 727 cgacagcagctcgttg 742
|| || ||||||||||
Sbjct: 424 cgccaccagctcgttg 439
Score = 58.0 bits (29), Expect = 8e-007
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 506 tcgtcgacggtggtgtacttgacatccgggtacagttcgctggcgtccacccc 558
||||| ||||||||||||||||| || |||||||| ||||| || ||||||||
Sbjct: 203 tcgtccacggtggtgtacttgacgtcagggtacagctcgctcgcctccacccc 255
>gb|BI958892.1|BI958892 HVSMEn0017B01f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0017B01f,
mRNA sequence
Length = 661
Score = 58.0 bits (29), Expect = 8e-007
Identities = 86/106 (81%)
Strand = Plus / Minus
Query: 1164 cggagatgaccacgtccgcgcccttcaccgcgctcaccaggctagcctggtcgtacaggt 1223
|||||||||||||||| | ||||| | |||||| ||||| | | |||||||||||||
Sbjct: 297 cggagatgaccacgtcgccccccttaccggcgctccccaggntcccgtggtcgtacaggt 238
Query: 1224 cgcccttgaggagcgtcacgccggcgtcctggaagctcttgagcag 1269
|||||||| || | || |||| | ||| |||||| ||||||||||
Sbjct: 237 cgcccttgcggcgtgttccgccngagtcntggaaggtcttgagcag 192
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 202,472
Number of Sequences: 312970
Number of extensions: 202472
Number of successful extensions: 61164
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61000
Number of HSP's gapped (non-prelim): 128
length of query: 1446
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1427
effective length of database: 169,188,109
effective search space: 241431431543
effective search space used: 241431431543
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)