BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3858636.2.1
(907 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF265916.1|BF265916 HV_CEa0013K19f Hordeum vulgare seedl... 299 8e-080
gb|BI959849.1|BI959849 HVSMEn0022A20f Hordeum vulgare rachi... 299 8e-080
gb|AV917458.1|AV917458 AV917458 K. Sato unpublished cDNA li... 299 8e-080
gb|AV928004.1|AV928004 AV928004 K. Sato unpublished cDNA li... 299 8e-080
gb|AV928635.1|AV928635 AV928635 K. Sato unpublished cDNA li... 299 8e-080
gb|AV930308.1|AV930308 AV930308 K. Sato unpublished cDNA li... 299 8e-080
gb|AV931028.1|AV931028 AV931028 K. Sato unpublished cDNA li... 299 8e-080
gb|AV931809.1|AV931809 AV931809 K. Sato unpublished cDNA li... 299 8e-080
gb|AV931810.1|AV931810 AV931810 K. Sato unpublished cDNA li... 299 8e-080
gb|BQ763878.1|BQ763878 EBro03_SQ005_L15_R root, 3 week, wat... 299 8e-080
gb|BQ765924.1|BQ765924 EBro03_SQ008_E16_R root, 3 week, wat... 299 8e-080
gb|CB880955.1|CB880955 HM08F11w HM Hordeum vulgare subsp. v... 299 8e-080
emb|Z49146.1|HVPAL3MR H.vulgare partial PAL mRNA for phenyl... 299 8e-080
gb|AV919005.1|AV919005 AV919005 K. Sato unpublished cDNA li... 293 5e-078
gb|AV930975.1|AV930975 AV930975 K. Sato unpublished cDNA li... 293 5e-078
gb|BM372199.2|BM372199 EBro03_SQ004_E20_R root, 3 week, wat... 285 1e-075
gb|BG365997.1|BG365997 HVSMEi0004M09f Hordeum vulgare 20 DA... 283 5e-075
gb|BG414191.1|BG414191 HVSMEk0001A07f Hordeum vulgare testa... 283 5e-075
gb|AV927824.1|AV927824 AV927824 K. Sato unpublished cDNA li... 272 2e-071
gb|BI956268.1|BI956268 HVSMEn0001M16f Hordeum vulgare rachi... 262 2e-068
gb|AL501346.1|AL501346 AL501346 Hordeum vulgare Barke roots... 254 4e-066
gb|BE421683.1|BE421683 HWM012cG.10r ITEC HWM Barley Leaf Li... 252 2e-065
gb|AL502685.1|AL502685 AL502685 Hordeum vulgare Barke roots... 252 2e-065
gb|BI956808.1|BI956808 HVSMEn0005G21f Hordeum vulgare rachi... 252 2e-065
gb|BI959376.1|BI959376 HVSMEn0019H01f Hordeum vulgare rachi... 252 2e-065
gb|AV931622.1|AV931622 AV931622 K. Sato unpublished cDNA li... 252 2e-065
gb|BJ468508.1|BJ468508 BJ468508 K. Sato unpublished cDNA li... 252 2e-065
gb|BQ469057.1|BQ469057 HM03D09r HM Hordeum vulgare subsp. v... 252 2e-065
gb|BJ465265.1|BJ465265 BJ465265 K. Sato unpublished cDNA li... 246 1e-063
gb|BF261029.2|BF261029 HVSMEf0023J05f Hordeum vulgare seedl... 242 2e-062
gb|BJ452093.1|BJ452093 BJ452093 K. Sato unpublished cDNA li... 242 2e-062
gb|AL501349.1|AL501349 AL501349 Hordeum vulgare Barke roots... 240 7e-062
gb|BI959802.1|BI959802 HVSMEn0021J20f Hordeum vulgare rachi... 222 2e-056
gb|AL501348.1|AL501348 AL501348 Hordeum vulgare Barke roots... 214 4e-054
gb|AL505275.1|AL505275 AL505275 Hordeum vulgare Barke roots... 210 6e-053
gb|AL501350.1|AL501350 AL501350 Hordeum vulgare Barke roots... 202 1e-050
gb|BF259754.3|BF259754 HVSMEf0020C19f Hordeum vulgare seedl... 200 6e-050
gb|BQ664513.1|BQ664513 HV03K13u HV Hordeum vulgare subsp. v... 200 6e-050
gb|AL502072.1|AL502072 AL502072 Hordeum vulgare Barke roots... 196 9e-049
gb|AL503927.1|AL503927 AL503927 Hordeum vulgare Barke roots... 196 9e-049
gb|BQ661371.1|BQ661371 HM03D09u HM Hordeum vulgare subsp. v... 194 4e-048
gb|BI959878.1|BI959878 HVSMEn0022D03f Hordeum vulgare rachi... 190 6e-047
gb|BM816193.1|BM816193 HC109D04_T3.ab1 HC Hordeum vulgare s... 186 9e-046
gb|AV912724.1|AV912724 AV912724 K. Sato unpublished cDNA li... 182 1e-044
gb|BI959574.1|BI959574 HVSMEn0020E07f Hordeum vulgare rachi... 174 3e-042
gb|BE558376.3|BE558376 HV_CEb0017H01f Hordeum vulgare seedl... 165 3e-039
gb|BI957553.1|BI957553 HVSMEn0010B19f Hordeum vulgare rachi... 157 8e-037
gb|AV926975.1|AV926975 AV926975 K. Sato unpublished cDNA li... 157 8e-037
gb|AL501309.1|AL501309 AL501309 Hordeum vulgare Barke roots... 151 5e-035
gb|AL505417.1|AL505417 AL505417 Hordeum vulgare Barke roots... 151 5e-035
gb|BI957512.1|BI957512 HVSMEn0009P04f Hordeum vulgare rachi... 151 5e-035
gb|BF628845.2|BF628845 HVSMEb0008N10f Hordeum vulgare seedl... 147 7e-034
gb|BE214612.2|BE214612 HV_CEb0003P13f Hordeum vulgare seedl... 147 7e-034
gb|AL502996.1|AL502996 AL502996 Hordeum vulgare Barke roots... 133 1e-029
gb|AL502555.1|AL502555 AL502555 Hordeum vulgare Barke roots... 125 3e-027
gb|BM816192.1|BM816192 HC110D06_T3.ab1 HC Hordeum vulgare s... 117 7e-025
gb|BG415885.2|BG415885 HVSMEk0008K04f Hordeum vulgare testa... 113 1e-023
gb|BI960030.1|BI960030 HVSMEn0022P01f Hordeum vulgare rachi... 111 4e-023
gb|BI958293.1|BI958293 HVSMEn0014E11f Hordeum vulgare rachi... 109 2e-022
gb|BI958535.1|BI958535 HVSMEn0015H19f Hordeum vulgare rachi... 109 2e-022
gb|BI959468.1|BI959468 HVSMEn0019M15f Hordeum vulgare rachi... 109 2e-022
gb|BI959619.1|BI959619 HVSMEn0020H03f Hordeum vulgare rachi... 109 2e-022
gb|BI959811.1|BI959811 HVSMEn0021K21f Hordeum vulgare rachi... 109 2e-022
gb|AV923115.1|AV923115 AV923115 K. Sato unpublished cDNA li... 109 2e-022
gb|AV925745.1|AV925745 AV925745 K. Sato unpublished cDNA li... 109 2e-022
gb|AV926974.1|AV926974 AV926974 K. Sato unpublished cDNA li... 109 2e-022
gb|BM372206.2|BM372206 EBro03_SQ004_F04_R root, 3 week, wat... 109 2e-022
gb|BU988288.1|BU988288 HF17D09r HF Hordeum vulgare subsp. v... 109 2e-022
gb|BF254228.2|BF254228 HVSMEf0003G02f Hordeum vulgare seedl... 101 4e-020
gb|BI957636.1|BI957636 HVSMEn0010H09f Hordeum vulgare rachi... 101 4e-020
gb|BF254448.3|BF254448 HVSMEf0004A20f Hordeum vulgare seedl... 98 6e-019
gb|BQ763018.1|BQ763018 EBro02_SQ006_L19_R root, 3 week, hyd... 98 6e-019
gb|AL501343.1|AL501343 AL501343 Hordeum vulgare Barke roots... 92 4e-017
gb|BG310118.1|BG310118 HVSMEc0016N14f Hordeum vulgare seedl... 92 4e-017
gb|BI957141.1|BI957141 HVSMEn0007L14f Hordeum vulgare rachi... 92 4e-017
gb|AV913531.1|AV913531 AV913531 K. Sato unpublished cDNA li... 92 4e-017
gb|BJ467713.1|BJ467713 BJ467713 K. Sato unpublished cDNA li... 92 4e-017
gb|BI778700.2|BI778700 EBro01_SQ001_C06_R root, 3 week, hyd... 92 4e-017
gb|BI779552.2|BI779552 EBro01_SQ004_G11_R root, 3 week, hyd... 92 4e-017
gb|BQ766648.1|BQ766648 EBro08_SQ006_A20_R root, 3 week, dro... 92 4e-017
gb|BQ767318.1|BQ767318 EBro08_SQ008_F18_R root, 3 week, dro... 92 4e-017
gb|BU990224.1|BU990224 HF24H03r HF Hordeum vulgare subsp. v... 92 4e-017
gb|CB881918.1|CB881918 HM11E17w HM Hordeum vulgare subsp. v... 92 4e-017
gb|CB882049.1|CB882049 HM11L11w HM Hordeum vulgare subsp. v... 92 4e-017
gb|BQ765736.1|BQ765736 EBro03_SQ008_D02_R root, 3 week, wat... 90 1e-016
gb|BU989823.1|BU989823 HF22M18r HF Hordeum vulgare subsp. v... 90 1e-016
gb|BU990169.1|BU990169 HF24E14r HF Hordeum vulgare subsp. v... 90 1e-016
gb|AL504786.1|AL504786 AL504786 Hordeum vulgare Barke roots... 80 1e-013
gb|BQ768383.1|BQ768383 EBro08_SQ011_F13_R root, 3 week, dro... 80 1e-013
gb|BU973291.1|BU973291 HB24G20r BC Hordeum vulgare subsp. v... 80 1e-013
gb|BU996801.1|BU996801 HM14M22r HM Hordeum vulgare subsp. v... 80 1e-013
gb|BQ762501.1|BQ762501 EBro02_SQ004_F04 _R root, 3 week, hy... 76 2e-012
gb|BG343667.2|BG343667 HVSMEg0006C21f Hordeum vulgare pre-a... 74 9e-012
gb|AV926549.1|AV926549 AV926549 K. Sato unpublished cDNA li... 68 5e-010
gb|BM100085.2|BM100085 EBma01_SQ001_C10_R maternal, 4 DPA, ... 68 5e-010
gb|BM443270.1|BM443270 EBro02_SQ003_F17_R root, 3 week, hyd... 66 2e-009
gb|BQ767013.1|BQ767013 EBro08_SQ007_A24_R root, 3 week, dro... 66 2e-009
gb|BI959268.1|BI959268 HVSMEn0019A02f Hordeum vulgare rachi... 60 1e-007
gb|AL503142.1|AL503142 AL503142 Hordeum vulgare Barke roots... 58 5e-007
gb|BF258018.2|BF258018 HVSMEf0014I06f Hordeum vulgare seedl... 58 5e-007
gb|AJ462386.1|AJ462386 AJ462386 S00002 Hordeum vulgare subs... 58 5e-007
gb|BQ756566.1|BQ756566 EBem09_SQ003_B12_R embryo, 1 Day ger... 58 5e-007
gb|BQ760542.1|BQ760542 EBro03_SQ001_F05_R root, 3 week, wat... 58 5e-007
gb|BF264601.3|BF264601 HV_CEa0009N21f Hordeum vulgare seedl... 56 2e-006
gb|AV921319.1|AV921319 AV921319 K. Sato unpublished cDNA li... 56 2e-006
gb|BJ451668.1|BJ451668 BJ451668 K. Sato unpublished cDNA li... 56 2e-006
gb|BJ464895.1|BJ464895 BJ464895 K. Sato unpublished cDNA li... 56 2e-006
gb|BM443160.2|BM443160 EBro02_SQ002_M21_R root, 3 week, hyd... 56 2e-006
gb|BM370557.2|BM370557 EBro08_SQ004_J10_R root, 3 week, dro... 56 2e-006
gb|BQ763710.1|BQ763710 EBro03_SQ005_O06_R root, 3 week, wat... 56 2e-006
gb|BQ763977.1|BQ763977 EBro03_SQ005_N21_R root, 3 week, wat... 56 2e-006
gb|BQ765192.1|BQ765192 EBro03_SQ006_A15_R root, 3 week, wat... 56 2e-006
gb|BQ765219.1|BQ765219 EBro03_SQ006_F15_R root, 3 week, wat... 56 2e-006
emb|Z49147.1|HVPAL7RM H.vulgare partial PAL mRNA for phenyl... 56 2e-006
gb|BF064672.2|BF064672 HV_CEb0016O13f Hordeum vulgare seedl... 54 8e-006
gb|BM372413.1|BM372413 EBro03_SQ004_O05_R root, 3 week, wat... 54 8e-006
gb|BM371045.2|BM371045 EBro04_SQ003_F03_R root, 3 week, sal... 54 8e-006
gb|BI778629.2|BI778629 EBro07_SQ003_N16_R root, 3 week, red... 54 8e-006
gb|BQ763446.1|BQ763446 EBro02_SQ008_K11_R root, 3 week, hyd... 54 8e-006
gb|AL500991.1|AL500991 AL500991 Hordeum vulgare Barke roots... 52 3e-005
gb|AV926550.1|AV926550 AV926550 K. Sato unpublished cDNA li... 52 3e-005
gb|AL501962.1|AL501962 AL501962 Hordeum vulgare Barke roots... 50 1e-004
gb|BF620898.2|BF620898 HVSMEa0003H14f Hordeum vulgare seedl... 50 1e-004
gb|BF626207.2|BF626207 HVSMEa0016H01f Hordeum vulgare seedl... 50 1e-004
gb|BI956563.1|BI956563 HVSMEn0004C18f Hordeum vulgare rachi... 50 1e-004
gb|BI956856.1|BI956856 HVSMEn0005K22f Hordeum vulgare rachi... 50 1e-004
gb|BI956996.1|BI956996 HVSMEn0006M15f Hordeum vulgare rachi... 50 1e-004
gb|BE216879.2|BE216879 HV_CEb0011O20f Hordeum vulgare seedl... 50 1e-004
gb|BI958519.1|BI958519 HVSMEn0015G17f Hordeum vulgare rachi... 50 1e-004
gb|BI959955.1|BI959955 HVSMEn0022J13f Hordeum vulgare rachi... 50 1e-004
gb|BG369437.2|BG369437 HVSMEi0024G12f Hordeum vulgare 20 DA... 50 1e-004
gb|BE216564.3|BE216564 HV_CEb0010N07f Hordeum vulgare seedl... 50 1e-004
gb|AV918830.1|AV918830 AV918830 K. Sato unpublished cDNA li... 50 1e-004
gb|BQ467962.1|BQ467962 HR01H18r HR Hordeum vulgare subsp. v... 50 1e-004
gb|BQ662656.1|BQ662656 HS03H24u HS Hordeum vulgare subsp. v... 50 1e-004
gb|BM443256.2|BM443256 EBro02_SQ003_E13_R root, 3 week, hyd... 50 1e-004
gb|BQ763815.1|BQ763815 EBro03_SQ005_A18 _R root, 3 week, wa... 50 1e-004
gb|CB858981.1|CB858981 HI08O15w HI Hordeum vulgare subsp. v... 50 1e-004
gb|BF628461.2|BF628461 HVSMEb0006C10f Hordeum vulgare seedl... 48 5e-004
gb|BI958930.1|BI958930 HVSMEn0017E12f Hordeum vulgare rachi... 48 5e-004
gb|BF065257.1|BF065257 HV_CEb0024K23f Hordeum vulgare seedl... 46 0.002
gb|BI777236.2|BI777236 EBro03_SQ002_I15_R root, 3 week, wat... 46 0.002
gb|AL503163.1|AL503163 AL503163 Hordeum vulgare Barke roots... 44 0.008
gb|BI957886.1|BI957886 HVSMEn0011O21f Hordeum vulgare rachi... 44 0.008
gb|BF265906.3|BF265906 HV_CEa0013K09f Hordeum vulgare seedl... 44 0.008
gb|BQ760454.1|BQ760454 EBro02_SQ002_M23_R root, 3 week, hyd... 44 0.008
gb|BI947758.1|BI947758 HVSMEl0006M12f Hordeum vulgare spike... 42 0.031
gb|BI955715.1|BI955715 HVSMEm0024C22f Hordeum vulgare green... 42 0.031
gb|BM444563.1|BM444563 EBem09_SQ005_L16_R embryo, 1 Day ger... 42 0.031
gb|BJ468382.1|BJ468382 BJ468382 K. Sato unpublished cDNA li... 42 0.031
gb|BQ765396.1|BQ765396 EBro03_SQ007_E05_R root, 3 week, wat... 42 0.031
gb|BQ765456.1|BQ765456 EBro03_SQ007_P05_R root, 3 week, wat... 42 0.031
gb|AJ427587.1|AJ427587 AJ427587 Hordeum vulgare subsp. vulg... 42 0.031
gb|AL503979.1|AL503979 AL503979 Hordeum vulgare Barke roots... 40 0.12
gb|BF255291.2|BF255291 HVSMEf0006H12f Hordeum vulgare seedl... 40 0.12
gb|BF260309.2|BF260309 HVSMEf0021K13f Hordeum vulgare seedl... 40 0.12
gb|BQ768801.1|BQ768801 EBro08_SQ012_P15_R root, 3 week, dro... 40 0.12
gb|BI779608.1|BI779608 EBro01_SQ004_J02_R root, 3 week, hyd... 38 0.49
gb|BF628084.2|BF628084 HVSMEb0003B12f Hordeum vulgare seedl... 38 0.49
gb|BF620243.2|BF620243 HVSMEc0019C18f Hordeum vulgare seedl... 38 0.49
gb|BG345133.1|BG345133 HVSMEg0018N03f Hordeum vulgare pre-a... 38 0.49
gb|BI951698.1|BI951698 HVSMEm0002B08f Hordeum vulgare green... 38 0.49
gb|BI957010.1|BI957010 HVSMEn0006O09f Hordeum vulgare rachi... 38 0.49
gb|BI958633.1|BI958633 HVSMEn0016A07f Hordeum vulgare rachi... 38 0.49
gb|BI959021.1|BI959021 HVSMEn0017M10f Hordeum vulgare rachi... 38 0.49
gb|BM371125.1|BM371125 EBro04_SQ003_I24_R root, 3 week, sal... 38 0.49
gb|BM374113.1|BM374113 EBma03_SQ003_L01_R maternal, 8 DPA, ... 38 0.49
gb|BM816794.1|BM816794 HB03E07_T3.ab1 HB Hordeum vulgare su... 38 0.49
gb|BM442954.2|BM442954 EBro02_SQ002_A11_R root, 3 week, hyd... 38 0.49
gb|BI777520.2|BI777520 EBro04_SQ001_H13_R root, 3 week, sal... 38 0.49
gb|BQ763051.1|BQ763051 EBro02_SQ007_C05_R root, 3 week, hyd... 38 0.49
gb|BU997753.1|BU997753 HI08O15r HI Hordeum vulgare subsp. v... 38 0.49
>gb|BF265916.1|BF265916 HV_CEa0013K19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013K19f, mRNA sequence
Length = 773
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 316 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 375
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 376 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 435
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 436 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 495
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 496 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 555
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 556 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 615
Query: 620 atc 622
|||
Sbjct: 616 atc 618
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 132 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 191
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 192 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 251
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 252 gcgcgccgtgctcgtggaccacg 274
>gb|BI959849.1|BI959849 HVSMEn0022A20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022A20f, mRNA sequence
Length = 623
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 167 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 226
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 227 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 286
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 287 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 346
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 347 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 406
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 407 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 466
Query: 620 atc 622
|||
Sbjct: 467 atc 469
Score = 75.8 bits (38), Expect = 2e-012
Identities = 86/102 (84%)
Strand = Plus / Plus
Query: 177 tcaccgccatcgaccgcgaggcggtgtacgggtactacgacgacccctgcagcgccaact 236
|||||||||||||||||||||| |||| | | ||| ||||||| | |||||||||||||
Sbjct: 24 tcaccgccatcgaccgcgaggccgtgttcagctacgccgacgacgcatgcagcgccaact 83
Query: 237 cgcccctgatgaagaagatccgggccgtgctggtggaccacg 278
|| |||||| ||||| | || |||||||| ||||||||||
Sbjct: 84 acccactgatgcagaagctgcgcgccgtgctcgtggaccacg 125
>gb|AV917458.1|AV917458 AV917458 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10a01 3', mRNA sequence
Length = 701
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Minus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 553 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 494
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 493 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 434
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 433 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 374
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 373 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 314
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 313 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 254
Query: 620 atc 622
|||
Sbjct: 253 atc 251
Score = 75.8 bits (38), Expect = 2e-012
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 177 tcaccgccatcgaccgcgaggcggtgtacgggtactacgacgacccctgcagcgccaact 236
|||||||||||||||||||||| |||| | | ||| ||||||| | |||||||||||||
Sbjct: 696 tcaccgccatcgaccgcgaggccgtgttcagctacgccgacgacgcatgcagcgccaact 637
Query: 237 cgcccctgatgaagaagatccgggccgtgctggtggaccacg 278
|| |||||| ||||| | || |||||||| ||||||||||
Sbjct: 636 acccactgatgcagaagctgcgcgccgtgctcgtggaccacg 595
>gb|AV928004.1|AV928004 AV928004 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13j05 3', mRNA sequence
Length = 609
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Minus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 533 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 474
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 473 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 414
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 413 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 354
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 353 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 294
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 293 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 234
Query: 620 atc 622
|||
Sbjct: 233 atc 231
>gb|AV928635.1|AV928635 AV928635 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd15c08 3', mRNA sequence
Length = 671
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Minus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 553 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 494
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 493 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 434
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 433 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 374
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 373 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 314
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 313 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 254
Query: 620 atc 622
|||
Sbjct: 253 atc 251
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 214 cgacgacccctgcagcgccaactcgcccctgatgaagaagatccgggccgtgctggtgga 273
||||||| | ||||||||||||| || |||||| ||||| | || |||||||| |||||
Sbjct: 659 cgacgacgcatgcagcgccaactacccactgatgcagaagctgcgcgccgtgctcgtgga 600
Query: 274 ccacg 278
|||||
Sbjct: 599 ccacg 595
>gb|AV930308.1|AV930308 AV930308 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21p01 3', mRNA sequence
Length = 560
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Minus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 554 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 495
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 494 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 435
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 434 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 375
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 374 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 315
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 314 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 255
Query: 620 atc 622
|||
Sbjct: 254 atc 252
>gb|AV931028.1|AV931028 AV931028 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18e12 3', mRNA sequence
Length = 664
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Minus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 553 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 494
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 493 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 434
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 433 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 374
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 373 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 314
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 313 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 254
Query: 620 atc 622
|||
Sbjct: 253 atc 251
Score = 50.1 bits (25), Expect = 1e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 214 cgacgacccctgcagcgccaactcgcccctgatgaagaagatccgggccgtgctggtgga 273
||||||| | ||||||||||||| || |||||| ||||| | || |||||||| |||||
Sbjct: 659 cgacgacgcatgcagcgccaactacccactgatgcagaagctgcgcgccgtgctcgtgga 600
Query: 274 ccacg 278
|||||
Sbjct: 599 ccacg 595
>gb|AV931809.1|AV931809 AV931809 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26e13 3', mRNA sequence
Length = 564
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Minus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 553 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 494
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 493 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 434
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 433 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 374
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 373 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 314
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 313 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 254
Query: 620 atc 622
|||
Sbjct: 253 atc 251
>gb|AV931810.1|AV931810 AV931810 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26e14 3', mRNA sequence
Length = 602
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Minus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 534 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 475
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 474 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 415
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 414 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 355
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 354 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 295
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 294 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 235
Query: 620 atc 622
|||
Sbjct: 234 atc 232
>gb|BQ763878.1|BQ763878 EBro03_SQ005_L15_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_L15 5', mRNA sequence
Length = 615
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 281 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 340
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 341 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 400
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 401 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 460
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 461 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 520
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 521 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 580
Query: 620 atc 622
|||
Sbjct: 581 atc 583
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 97 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 156
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 157 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 216
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 217 gcgcgccgtgctcgtggaccacg 239
>gb|BQ765924.1|BQ765924 EBro03_SQ008_E16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_E16 5', mRNA sequence
Length = 625
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 293 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 352
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 353 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 412
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 413 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 472
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 473 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 532
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 533 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 592
Query: 620 atc 622
|||
Sbjct: 593 atc 595
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 109 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 168
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 169 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 228
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 229 gcgcgccgtgctcgtggaccacg 251
>gb|CB880955.1|CB880955 HM08F11w HM Hordeum vulgare subsp. vulgare cDNA clone HM08F11
3-PRIME, mRNA sequence
Length = 596
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Minus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 573 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 514
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 513 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 454
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 453 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 394
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 393 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 334
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 333 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 274
Query: 620 atc 622
|||
Sbjct: 273 atc 271
>emb|Z49146.1|HVPAL3MR H.vulgare partial PAL mRNA for phenylalanine ammonia-lyase (1831 bp)
Length = 1831
Score = 299 bits (151), Expect = 8e-080
Identities = 265/303 (87%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 1185 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 1244
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 1245 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 1304
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 1305 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 1364
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 1365 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 1424
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 1425 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 1484
Query: 620 atc 622
|||
Sbjct: 1485 atc 1487
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 1001 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 1060
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 1061 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 1120
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 1121 gcgcgccgtgctcgtggaccacg 1143
>gb|AV919005.1|AV919005 AV919005 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22p22 3', mRNA sequence
Length = 572
Score = 293 bits (148), Expect = 5e-078
Identities = 264/303 (87%)
Strand = Plus / Minus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| || || |||||||
Sbjct: 512 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctnccgcgggagatc 453
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 452 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 393
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 392 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 333
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 332 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 273
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 272 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 213
Query: 620 atc 622
|||
Sbjct: 212 atc 210
>gb|AV930975.1|AV930975 AV930975 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18b11 3', mRNA sequence
Length = 550
Score = 293 bits (148), Expect = 5e-078
Identities = 262/300 (87%)
Strand = Plus / Minus
Query: 323 ttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatggag 382
|||||||||||||||| |||||||||||||||||| ||| ||||| ||||||| |||
Sbjct: 550 ttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatcgag 491
Query: 383 gccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggagagc 442
|||||||||||||||||||||| |||| | ||||| ||| ||||| |||||||||||||
Sbjct: 490 gccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggagagc 431
Query: 443 cggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgaccggc 502
|||||| |||||||||||||||| ||||| |||| |||||| ||||||||| ||||||
Sbjct: 430 aggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggc 371
Query: 503 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgagggc 562
|||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| || |
Sbjct: 370 gagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaac 311
Query: 563 aagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgcccatc 622
||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct: 310 aagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatc 251
>gb|BM372199.2|BM372199 EBro03_SQ004_E20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_E20 5', mRNA sequence
Length = 521
Score = 285 bits (144), Expect = 1e-075
Identities = 265/304 (87%), Gaps = 1/304 (0%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 51 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 110
Query: 380 gaggccgcccgcgtggcctt-cgagaccggcgccgcgccgatcgccaacaggatcaagga 438
|||||||||||||||||||| ||||| |||| | ||||| ||| ||||| |||||||||
Sbjct: 111 gaggccgcccgcgtggcctttcgagaacggcacggcgcccatccccaacctgatcaagga 170
Query: 439 gagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgac 498
|||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| ||
Sbjct: 171 gagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcac 230
Query: 499 cggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcga 558
|||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| |
Sbjct: 231 cggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagcca 290
Query: 559 gggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgcc 618
| |||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct: 291 gaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcc 350
Query: 619 catc 622
||||
Sbjct: 351 catc 354
>gb|BG365997.1|BG365997 HVSMEi0004M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0004M09f, mRNA sequence
Length = 939
Score = 283 bits (143), Expect = 5e-075
Identities = 263/303 (86%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 280 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 339
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 340 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 399
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| ||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 400 agcaggtcgttcccgctgtaccgcttagtccgcgaggagctcggctgcgtgtacctcacc 459
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| || || | | ||||| ||
Sbjct: 460 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttgctcggcatcagccag 519
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 520 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 579
Query: 620 atc 622
|||
Sbjct: 580 atc 582
Score = 85.7 bits (43), Expect = 2e-015
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| || ||||||||| | ||||||| ||| |||||||||||||||||||
Sbjct: 96 cggcgacctctccatcgcgcgcttgatcgagaagagcctcatcaccgccatcgaccgcga 155
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 156 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 215
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 216 gcgcgccgtgctcgtggaccacg 238
>gb|BG414191.1|BG414191 HVSMEk0001A07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0001A07f, mRNA sequence
Length = 586
Score = 283 bits (143), Expect = 5e-075
Identities = 263/303 (86%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 178 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 237
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 238 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 297
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 298 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 357
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 358 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctaggcatcagccag 417
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
||||||||||||||| |||||||| ||||||||||| ||| ||||| |||||||||||
Sbjct: 418 aacaagctcatcgacccaatgctcgagtgcctcaaggaatggaacggcgagcccctgccc 477
Query: 620 atc 622
|||
Sbjct: 478 atc 480
Score = 101 bits (51), Expect = 4e-020
Identities = 111/131 (84%)
Strand = Plus / Plus
Query: 148 cagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcgaggcggtgtacgg 207
|||||||||||||||||||||| ||| |||||||||||||||||||||| |||| | |
Sbjct: 6 cagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcag 65
Query: 208 gtactacgacgacccctgcagcgccaactcgcccctgatgaagaagatccgggccgtgct 267
||| ||||||| | ||||||||||||| || |||||| ||||| | || ||||||||
Sbjct: 66 ctacgccgacgacgcatgcagcgccaactacccactgatgcagaagctgcgcgccgtgct 125
Query: 268 ggtggaccacg 278
||||||||||
Sbjct: 126 cgtggaccacg 136
>gb|AV927824.1|AV927824 AV927824 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3n19 3', mRNA sequence
Length = 589
Score = 272 bits (137), Expect = 2e-071
Identities = 265/305 (86%), Gaps = 2/305 (0%)
Strand = Plus / Minus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 556 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 497
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 496 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 437
Query: 440 agccggtcgtacccgctgtaccgc-ttcatccgccaggacctcggcgccgtgtacctgac 498
||| |||||| ||||||||||||| ||| ||||| |||| |||||| ||||||||| ||
Sbjct: 436 agcaggtcgttcccgctgtaccgctttcgtccgcgaggagctcggctgcgtgtacctcac 377
Query: 499 cggcgagaagctcaagtcccccggcgaggagtgcaacaa-ggtgttcctggccctcagcg 557
|||||||||||| ||||||||||||||| |||| ||| ||| ||||| | | |||||
Sbjct: 376 cggcgagaagctgctgtcccccggcgaggaatgcaccaagggtcttcctcggcatcagcc 317
Query: 558 agggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgc 617
|| |||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct: 316 agaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgc 257
Query: 618 ccatc 622
|||||
Sbjct: 256 ccatc 252
>gb|BI956268.1|BI956268 HVSMEn0001M16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001M16f, mRNA sequence
Length = 613
Score = 262 bits (132), Expect = 2e-068
Identities = 260/303 (85%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 185 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 244
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 245 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 304
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 305 agcaggtcgttcccgctgtaccgcttcntccgcgaggagctcggctgcgtgtacctcacc 364
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | | ||| |
Sbjct: 365 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcattagccaa 424
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||| || |||||||||||||| ||||||||||||||| ||||| |||||||| ||
Sbjct: 425 aacaagcttattgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctggcc 484
Query: 620 atc 622
|||
Sbjct: 485 atc 487
Score = 101 bits (51), Expect = 4e-020
Identities = 111/131 (84%)
Strand = Plus / Plus
Query: 148 cagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcgaggcggtgtacgg 207
|||||||||||||||||||||| ||| |||||||||||||||||||||| |||| | |
Sbjct: 13 cagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcgaggccgtgttcag 72
Query: 208 gtactacgacgacccctgcagcgccaactcgcccctgatgaagaagatccgggccgtgct 267
||| ||||||| | ||||||||||||| || |||||| ||||| | || ||||||||
Sbjct: 73 ctacgccgacgacgcatgcagcgccaactacccactgatgcagaagctgcgcgccgtgct 132
Query: 268 ggtggaccacg 278
||||||||||
Sbjct: 133 cgtggaccacg 143
>gb|AL501346.1|AL501346 AL501346 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O05u 3', mRNA sequence
Length = 690
Score = 254 bits (128), Expect = 4e-066
Identities = 262/303 (86%), Gaps = 3/303 (0%)
Strand = Plus / Minus
Query: 323 ttctccaagatcaa-caggttcg-aggaggagctgcgcgaggcgctgcccagggagat-g 379
|||||||||||||| || ||||| ||||||||||||| ||| || || ||||||| |
Sbjct: 591 ttctccaagatcaaacaagttcggaggaggagctgcggtcggccctnccgcgggagatcg 532
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 531 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 472
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 471 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 412
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 411 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 352
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 351 aacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccc 292
Query: 620 atc 622
|||
Sbjct: 291 atc 289
>gb|BE421683.1|BE421683 HWM012cG.10r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM012cG.10, mRNA sequence
Length = 1180
Score = 252 bits (127), Expect = 2e-065
Identities = 220/251 (87%)
Strand = Plus / Plus
Query: 372 gggagatggaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacagga 431
||||||| ||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||
Sbjct: 135 gggagatcgaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctga 194
Query: 432 tcaaggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgt 491
||||||||||| |||||| |||||||||||||||| ||||| |||| |||||| |||||
Sbjct: 195 tcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgt 254
Query: 492 acctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccc 551
|||| |||||||||||||| ||||||||||||||| |||| |||||| ||||| | |
Sbjct: 255 acctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggca 314
Query: 552 tcagcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagc 611
||||| || |||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 315 tcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagc 374
Query: 612 ccctgcccatc 622
|||||||||||
Sbjct: 375 ccctgcccatc 385
>gb|AL502685.1|AL502685 AL502685 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08G13u 3', mRNA sequence
Length = 556
Score = 252 bits (127), Expect = 2e-065
Identities = 220/251 (87%)
Strand = Plus / Minus
Query: 372 gggagatggaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacagga 431
||||||| ||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||
Sbjct: 541 gggagatcgaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctga 482
Query: 432 tcaaggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgt 491
||||||||||| |||||| |||||||||||||||| ||||| |||| |||||| |||||
Sbjct: 481 tcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgt 422
Query: 492 acctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccc 551
|||| |||||||||||||| ||||||||||||||| |||| |||||| ||||| | |
Sbjct: 421 acctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggca 362
Query: 552 tcagcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagc 611
||||| || |||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 361 tcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagc 302
Query: 612 ccctgcccatc 622
|||||||||||
Sbjct: 301 ccctgcccatc 291
>gb|BI956808.1|BI956808 HVSMEn0005G21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005G21f, mRNA sequence
Length = 817
Score = 252 bits (127), Expect = 2e-065
Identities = 259/303 (85%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 362 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 421
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 422 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 481
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 482 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 541
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||| ||||| |||| ||||| ||||| | | ||| | |
Sbjct: 542 ggcgagaagctgctgtcccccggggaggaatgcaccaagggcttccttggcatcacccac 601
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
||||||||| |||||||||||||| ||||||||||||||| ||||| | |||||||||
Sbjct: 602 aacaagctcattgaccccatgctcgagtgcctcaaggagtggaacggcgaacccctgccc 661
Query: 620 atc 622
|||
Sbjct: 662 atc 664
Score = 83.8 bits (42), Expect = 9e-015
Identities = 119/145 (82%)
Strand = Plus / Plus
Query: 134 ggcggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgc 193
||||| |||||| |||||||||||||| | |||| ||| |||||||||||||||||
Sbjct: 176 ggcggggacctctccagcgcgcgcttcatcnagaaaagcctcatcaccgccatcgaccgc 235
Query: 194 gaggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaag 253
||||| |||| | | ||| ||||||| | ||||||||||||| || |||||| |||||
Sbjct: 236 gaggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaag 295
Query: 254 atccgggccgtgctggtggaccacg 278
| || |||||||| ||||||||||
Sbjct: 296 ctgcgcgccgtgctcgtggaccacg 320
>gb|BI959376.1|BI959376 HVSMEn0019H01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019H01f, mRNA sequence
Length = 613
Score = 252 bits (127), Expect = 2e-065
Identities = 220/251 (87%)
Strand = Plus / Minus
Query: 372 gggagatggaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacagga 431
||||||| ||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||
Sbjct: 550 gggagatcgaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctga 491
Query: 432 tcaaggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgt 491
||||||||||| |||||| |||||||||||||||| ||||| |||| |||||| |||||
Sbjct: 490 tcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgt 431
Query: 492 acctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccc 551
|||| |||||||||||||| ||||||||||||||| |||| |||||| ||||| | |
Sbjct: 430 acctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggca 371
Query: 552 tcagcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagc 611
||||| || |||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 370 tcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagc 311
Query: 612 ccctgcccatc 622
|||||||||||
Sbjct: 310 ccctgcccatc 300
>gb|AV931622.1|AV931622 AV931622 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23i14 3', mRNA sequence
Length = 504
Score = 252 bits (127), Expect = 2e-065
Identities = 220/251 (87%)
Strand = Plus / Minus
Query: 372 gggagatggaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacagga 431
||||||| ||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||
Sbjct: 480 gggagatcgaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctga 421
Query: 432 tcaaggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgt 491
||||||||||| |||||| |||||||||||||||| ||||| |||| |||||| |||||
Sbjct: 420 tcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgt 361
Query: 492 acctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccc 551
|||| |||||||||||||| ||||||||||||||| |||| |||||| ||||| | |
Sbjct: 360 acctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggca 301
Query: 552 tcagcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagc 611
||||| || |||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 300 tcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagc 241
Query: 612 ccctgcccatc 622
|||||||||||
Sbjct: 240 ccctgcccatc 230
>gb|BJ468508.1|BJ468508 BJ468508 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b24 3', mRNA sequence
Length = 477
Score = 252 bits (127), Expect = 2e-065
Identities = 220/251 (87%)
Strand = Plus / Minus
Query: 372 gggagatggaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacagga 431
||||||| ||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||
Sbjct: 471 gggagatcgaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctga 412
Query: 432 tcaaggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgt 491
||||||||||| |||||| |||||||||||||||| ||||| |||| |||||| |||||
Sbjct: 411 tcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgt 352
Query: 492 acctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccc 551
|||| |||||||||||||| ||||||||||||||| |||| |||||| ||||| | |
Sbjct: 351 acctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggca 292
Query: 552 tcagcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagc 611
||||| || |||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 291 tcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagc 232
Query: 612 ccctgcccatc 622
|||||||||||
Sbjct: 231 ccctgcccatc 221
>gb|BQ469057.1|BQ469057 HM03D09r HM Hordeum vulgare subsp. vulgare cDNA clone HM03D09
5-PRIME, mRNA sequence
Length = 535
Score = 252 bits (127), Expect = 2e-065
Identities = 235/271 (86%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 265 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 324
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 325 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 384
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 385 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 444
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 445 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccag 504
Query: 560 ggcaagctcatcgaccccatgctcgactgcc 590
|||||||||||||||||||||||| ||||
Sbjct: 505 aacaagctcatcgaccccatgctcgagtgcc 535
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 81 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 140
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 141 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 200
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 201 gcgcgccgtgctcgtggaccacg 223
>gb|BJ465265.1|BJ465265 BJ465265 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b24 5', mRNA sequence
Length = 538
Score = 246 bits (124), Expect = 1e-063
Identities = 217/248 (87%)
Strand = Plus / Plus
Query: 375 agatggaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatca 434
|||| ||||||||||||||||||||||||| |||| | ||||| ||| ||||| |||||
Sbjct: 11 agatcgaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatca 70
Query: 435 aggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacc 494
|||||||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||
Sbjct: 71 aggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacc 130
Query: 495 tgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctca 554
| |||||||||||||| ||||||||||||||| |||| |||||| ||||| | | |||
Sbjct: 131 tcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatca 190
Query: 555 gcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccc 614
|| || |||||||||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct: 191 gccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccc 250
Query: 615 tgcccatc 622
||||||||
Sbjct: 251 tgcccatc 258
>gb|BF261029.2|BF261029 HVSMEf0023J05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023J05f, mRNA sequence
Length = 819
Score = 242 bits (122), Expect = 2e-062
Identities = 258/302 (85%), Gaps = 1/302 (0%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 468 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 527
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 528 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 587
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| | ||| |||| |||||| ||||||||| |||
Sbjct: 588 agcaggtcgttcccgctgtaccgcttcgttcgcgaggagctcggctgcgtgtacctcacc 647
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| || |||||||||||| |||| |||||| || || | | | ||| ||
Sbjct: 648 ggcgagaagctgctgt-ccccggcgaggaatgcaccaaggtctttctcggcattagccag 706
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
|||||||||||||||||||||||| ||||||| ||||||| ||||| || ||||||||
Sbjct: 707 aacaagctcatcgaccccatgctcgagtgcctcagggagtggaacggcgaggccctgccc 766
Query: 620 at 621
||
Sbjct: 767 at 768
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 284 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 343
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 344 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 403
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 404 gcgcgccgtgctcgtggaccacg 426
>gb|BJ452093.1|BJ452093 BJ452093 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37l15 5', mRNA sequence
Length = 426
Score = 242 bits (122), Expect = 2e-062
Identities = 212/242 (87%)
Strand = Plus / Plus
Query: 381 aggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggaga 440
|||||||||||||||||||||||| |||| | ||||| ||| ||||| |||||||||||
Sbjct: 23 aggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggaga 82
Query: 441 gccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgaccg 500
|| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| ||||
Sbjct: 83 gcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccg 142
Query: 501 gcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgagg 560
|||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| ||
Sbjct: 143 gcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccaga 202
Query: 561 gcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccca 620
|||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||
Sbjct: 203 acaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgccca 262
Query: 621 tc 622
||
Sbjct: 263 tc 264
>gb|AL501349.1|AL501349 AL501349 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O10u 3', mRNA sequence
Length = 559
Score = 240 bits (121), Expect = 7e-062
Identities = 220/252 (87%), Gaps = 1/252 (0%)
Strand = Plus / Minus
Query: 372 gggagatggaggccgccc-gcgtggccttcgagaccggcgccgcgccgatcgccaacagg 430
||||||| |||||||||| ||||||||||||||| |||| | ||||| ||| ||||| |
Sbjct: 540 gggagatcgaggccgccccgcgtggccttcgagaacggcacggcgcccatccccaacctg 481
Query: 431 atcaaggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtg 490
|||||||||||| |||||| |||||||||||||||| ||||| |||| |||||| ||||
Sbjct: 480 atcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtg 421
Query: 491 tacctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggcc 550
||||| |||||||||||||| ||||||||||||||| |||| |||||| ||||| | |
Sbjct: 420 tacctcaccggcgagaagctnctgtcccccggcgaggaatgcaccaaggtcttcctcggc 361
Query: 551 ctcagcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaag 610
||||| || |||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct: 360 atcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgag 301
Query: 611 cccctgcccatc 622
||||||||||||
Sbjct: 300 cccctgcccatc 289
>gb|BI959802.1|BI959802 HVSMEn0021J20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021J20f, mRNA sequence
Length = 480
Score = 222 bits (112), Expect = 2e-056
Identities = 223/260 (85%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 221 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 280
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 281 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 340
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| | || |||||| ||||||||| |||
Sbjct: 341 agcaggtcgttcccgctgtaccgcttcgtccgcgaagagctcggctgcgtgtacctcacc 400
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
||||||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| |
Sbjct: 401 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccaa 460
Query: 560 ggcaagctcatcgaccccat 579
||||||||||||||||||
Sbjct: 461 aacaagctcatcgaccccat 480
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 37 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 96
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 97 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 156
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 157 gcgcgccgtgctcgtggaccacg 179
>gb|AL501348.1|AL501348 AL501348 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O09u 3', mRNA sequence
Length = 594
Score = 214 bits (108), Expect = 4e-054
Identities = 208/240 (86%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 384 ccgcccgcgtggccttcg-agaccggcgccgcgccgatcgccaacaggatcaaggagagc 442
||||||||||| |||||| ||| |||| | ||||| ||| ||||| |||||||||||||
Sbjct: 528 ccgcccgcgtgcccttcggagaacggcacggcgcccatccccaacctgatcaaggagagc 469
Query: 443 cggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgaccggc 502
|||||| |||||||||||||||| ||||| |||| |||||| ||||||||| ||||||
Sbjct: 468 aggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggc 409
Query: 503 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgagggc 562
|||||||| ||||||||||||||| |||| |||||| ||||| | | ||||| || |
Sbjct: 408 gagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaac 349
Query: 563 aagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgcccatc 622
||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct: 348 aagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatc 289
>gb|AL505275.1|AL505275 AL505275 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07P09V 5', mRNA sequence
Length = 487
Score = 210 bits (106), Expect = 6e-053
Identities = 192/221 (86%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 265 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 324
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 325 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 384
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| | |
Sbjct: 385 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcanc 444
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggt 540
||||||||||| ||||||||||||||| |||| ||||||
Sbjct: 445 ggcgagaagctgctgtcccccggcgaggaatgcaccaaggt 485
Score = 93.7 bits (47), Expect = 1e-017
Identities = 119/143 (83%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||| ||||||| ||| |||||| ||||||||||||
Sbjct: 81 cggcgacctctccagcgcgcgcttcatcgagaagagcctcatcaccgtcatcgaccgcga 140
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 141 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 200
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 201 gcgcgccgtgctcgtggaccacg 223
>gb|AL501350.1|AL501350 AL501350 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O11u 3', mRNA sequence
Length = 605
Score = 202 bits (102), Expect = 1e-050
Identities = 183/210 (87%)
Strand = Plus / Minus
Query: 413 gcgccgatcgccaacaggatcaaggagagccggtcgtacccgctgtaccgcttcatccgc 472
||||| ||| ||||| ||||||||||||| |||||| |||||||||||||||| |||||
Sbjct: 498 gcgcccatccccaacctgatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgc 439
Query: 473 caggacctcggcgccgtgtacctgaccggcgagaagctcaagtcccccggcgaggagtgc 532
|||| |||||| ||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct: 438 gaggagctcggctgcgtgtacctcaccggcgagaagctgctgtcccccggcgaggaatgc 379
Query: 533 aacaaggtgttcctggccctcagcgagggcaagctcatcgaccccatgctcgactgcctc 592
| |||||| ||||| | | ||||| || |||||||||||||||||||||||| ||||||
Sbjct: 378 accaaggtcttcctcggcatcagccagaacaagctcatcgaccccatgctcgagtgcctc 319
Query: 593 aaggagtgggacggcaagcccctgcccatc 622
||||||||| ||||| ||||||||||||||
Sbjct: 318 aaggagtggaacggcgagcccctgcccatc 289
>gb|BF259754.3|BF259754 HVSMEf0020C19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020C19f, mRNA sequence
Length = 496
Score = 200 bits (101), Expect = 6e-050
Identities = 170/193 (88%)
Strand = Plus / Plus
Query: 430 gatcaaggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgt 489
||||||||||||| |||||| |||||||||||||||| ||||| |||| |||||| |||
Sbjct: 17 gatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgt 76
Query: 490 gtacctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggc 549
|||||| |||||||||||||| ||||||||||||||| |||| |||||| ||||| |
Sbjct: 77 gtacctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcgg 136
Query: 550 cctcagcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaa 609
| ||||| || |||||||||||||||||||||||| ||||||||||||||| ||||| |
Sbjct: 137 catcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcga 196
Query: 610 gcccctgcccatc 622
|||||||||||||
Sbjct: 197 gcccctgcccatc 209
>gb|BQ664513.1|BQ664513 HV03K13u HV Hordeum vulgare subsp. vulgare cDNA clone HV03K13
3-PRIME, mRNA sequence
Length = 471
Score = 200 bits (101), Expect = 6e-050
Identities = 170/193 (88%)
Strand = Plus / Minus
Query: 430 gatcaaggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgt 489
||||||||||||| |||||| |||||||||||||||| ||||| |||| |||||| |||
Sbjct: 460 gatcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgt 401
Query: 490 gtacctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggc 549
|||||| |||||||||||||| ||||||||||||||| |||| |||||| ||||| |
Sbjct: 400 gtacctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcgg 341
Query: 550 cctcagcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaa 609
| ||||| || |||||||||||||||||||||||| ||||||||||||||| ||||| |
Sbjct: 340 catcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcga 281
Query: 610 gcccctgcccatc 622
|||||||||||||
Sbjct: 280 gcccctgcccatc 268
>gb|AL502072.1|AL502072 AL502072 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06G07u 3', mRNA sequence
Length = 479
Score = 196 bits (99), Expect = 9e-049
Identities = 168/191 (87%)
Strand = Plus / Minus
Query: 432 tcaaggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgt 491
||||||||||| |||||| |||||||||||||||| ||||| |||| |||||| |||||
Sbjct: 479 tcaaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgt 420
Query: 492 acctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccc 551
|||| |||||||||||||| ||||||||||||||| |||| |||||| ||||| | |
Sbjct: 419 acctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggca 360
Query: 552 tcagcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagc 611
||||| || |||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct: 359 tcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagc 300
Query: 612 ccctgcccatc 622
|||||||||||
Sbjct: 299 ccctgcccatc 289
>gb|AL503927.1|AL503927 AL503927 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03O01T 5', mRNA sequence
Length = 418
Score = 196 bits (99), Expect = 9e-049
Identities = 168/191 (87%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 217 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 276
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 277 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 336
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 337 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 396
Query: 500 ggcgagaagct 510
|||||||||||
Sbjct: 397 ggcgagaagct 407
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 33 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 92
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 93 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 152
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 153 gcgcgccgtgctcgtggaccacg 175
>gb|BQ661371.1|BQ661371 HM03D09u HM Hordeum vulgare subsp. vulgare cDNA clone HM03D09
3-PRIME, mRNA sequence
Length = 460
Score = 194 bits (98), Expect = 4e-048
Identities = 167/190 (87%)
Strand = Plus / Minus
Query: 433 caaggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgta 492
|||||||||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||
Sbjct: 460 caaggagagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgta 401
Query: 493 cctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccct 552
||| |||||||||||||| ||||||||||||||| |||| |||||| ||||| | | |
Sbjct: 400 cctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcat 341
Query: 553 cagcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcc 612
|||| || |||||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 340 cagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgagcc 281
Query: 613 cctgcccatc 622
||||||||||
Sbjct: 280 cctgcccatc 271
>gb|BI959878.1|BI959878 HVSMEn0022D03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022D03f, mRNA sequence
Length = 599
Score = 190 bits (96), Expect = 6e-047
Identities = 180/208 (86%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 45 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 104
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 105 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 164
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| || ||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 165 agcggggcgttcccgctgtaccgcttcgtccgcaaggagctcggctgcgtgtacctcacc 224
Query: 500 ggcgagaagctcaagtcccccggcgagg 527
||||||||||| ||||||||| ||||
Sbjct: 225 ggcgagaagctgctgtcccccggggagg 252
>gb|BM816193.1|BM816193 HC109D04_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109D04_T3.ab1 similar to DNA-(apurinic or apyrimidinic
site) lyase,Histidine ammonia-lyase,Phenylalanine
ammonia-lyase,, mRNA sequence
Length = 812
Score = 186 bits (94), Expect = 9e-046
Identities = 225/266 (84%), Gaps = 2/266 (0%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 503 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 562
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||| ||||||
Sbjct: 563 gaggccgcccgcgtggccttcgagaacggcacggcgcccatc-ccaacctgat-aaggag 620
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |||
Sbjct: 621 agcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcacc 680
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
| ||||||||| ||||||||||||||| |||| ||||| | || | | |||||
Sbjct: 681 gccgagaagctgctgtcccccggcgaggaatgcaccaagggtcttctcggcatcagccca 740
Query: 560 ggcaagctcatcgaccccatgctcga 585
| ||||||||||||||||||||||||
Sbjct: 741 gacaagctcatcgaccccatgctcga 766
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 319 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 378
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 379 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 438
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 439 gcgcgccgtgctcgtggaccacg 461
>gb|AV912724.1|AV912724 AV912724 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10a01 5', mRNA sequence
Length = 618
Score = 182 bits (92), Expect = 1e-044
Identities = 187/216 (86%), Gaps = 2/216 (0%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagct-gcgcgaggcgctgcccagggagat 378
||||||||||||||||||| ||||||||||||||| ||| ||| ||||| |||||||
Sbjct: 400 gtgttctccaagatcaacaagttcgaggaggagcttgcggtcggccctgccgcgggagat 459
Query: 379 ggaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaagga 438
||||||||||||||||||||||||| |||| | ||||| ||| ||||| |||||||||
Sbjct: 460 cgaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaagga 519
Query: 439 gagccggtcgtacccgctgtaccgcttcatccgccaggacctcggc-gccgtgtacctga 497
|||| |||||| |||||||||||||||| ||||| |||| |||||| ||||||||| |
Sbjct: 520 gagcaggtcgttcccgctgtaccgcttcgtccgcgaggagctcggcttgcgtgtacctca 579
Query: 498 ccggcgagaagctcaagtcccccggcgaggagtgca 533
||||||||||||| ||||||||||||||| ||||
Sbjct: 580 ccggcgagaagctgctgtcccccggcgaggaatgca 615
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 216 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 275
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 276 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 335
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 336 gcgcgccgtgctcgtggaccacg 358
>gb|BI959574.1|BI959574 HVSMEn0020E07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020E07f, mRNA sequence
Length = 681
Score = 174 bits (88), Expect = 3e-042
Identities = 166/192 (86%)
Strand = Plus / Minus
Query: 431 atcaaggagagccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtg 490
|||||||||||| |||||| ||||||||||||||| ||||| |||| |||||| ||||
Sbjct: 551 atcaaggagagcaggtcgttcccgctgtaccgctttgtccgcaaggagctcggctgcgtg 492
Query: 491 tacctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggcc 550
| ||| ||||||||||||| ||||||||||||||| |||| |||||| ||||| | |
Sbjct: 491 tccctccccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggc 432
Query: 551 ctcagcgagggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaag 610
||||| || |||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct: 431 atcagccagaacaagctcatcgaccccatgctcgagtgcctcaaggagtggaacggcgag 372
Query: 611 cccctgcccatc 622
||||||||||||
Sbjct: 371 cccctgcccatc 360
>gb|BE558376.3|BE558376 HV_CEb0017H01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017H01f, mRNA sequence
Length = 498
Score = 165 bits (83), Expect = 3e-039
Identities = 146/167 (87%)
Strand = Plus / Plus
Query: 456 tgtaccgcttcatccgccaggacctcggcgccgtgtacctgaccggcgagaagctcaagt 515
||||||||||| ||||| |||| |||||| ||||||||| |||||||||||||| ||
Sbjct: 43 tgtaccgcttcgtccgcgaggagctcggctgcgtgtacctcaccggcgagaagctgctgt 102
Query: 516 cccccggcgaggagtgcaacaaggtgttcctggccctcagcgagggcaagctcatcgacc 575
||||||||||||| |||| |||||| ||||| | | ||||| || ||||||||||||||
Sbjct: 103 cccccggcgaggaatgcaccaaggtcttcctcggcatcagccagaacaagctcatcgacc 162
Query: 576 ccatgctcgactgcctcaaggagtgggacggcaagcccctgcccatc 622
|||||||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct: 163 ccatgctcgagtgcctcaaggagtggaacggcgagcccctgcccatc 209
>gb|BI957553.1|BI957553 HVSMEn0010B19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010B19f, mRNA sequence
Length = 633
Score = 157 bits (79), Expect = 8e-037
Identities = 130/147 (88%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 484 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 543
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 544 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 603
Query: 440 agccggtcgtacccgctgtaccgcttc 466
||| |||||| ||||||||||||||||
Sbjct: 604 agcaggtcgttcccgctgtaccgcttc 630
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 300 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 359
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 360 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 419
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 420 gcgcgccgtgctcgtggaccacg 442
>gb|AV926975.1|AV926975 AV926975 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26e14 5', mRNA sequence
Length = 625
Score = 157 bits (79), Expect = 8e-037
Identities = 130/147 (88%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 477 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 536
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||||||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 537 gaggccgcccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 596
Query: 440 agccggtcgtacccgctgtaccgcttc 466
||| |||||| ||||||||||||||||
Sbjct: 597 agcaggtcgttcccgctgtaccgcttc 623
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 293 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 352
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 353 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 412
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 413 gcgcgccgtgctcgtggaccacg 435
>gb|AL501309.1|AL501309 AL501309 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03M04u 3', mRNA sequence
Length = 562
Score = 151 bits (76), Expect = 5e-035
Identities = 166/192 (86%), Gaps = 3/192 (1%)
Strand = Plus / Minus
Query: 434 aaggagagccggtcgtaccc-gctgtacc-gcttcatccgccaggacctcggcgccgtgt 491
||||||||| |||||| ||| |||||||| ||||| |||| |||| |||||| |||||
Sbjct: 545 aaggagagcaggtcgttccccgctgtacccgcttcgaccgcgaggagctcggctgcgtgt 486
Query: 492 acctgaccggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccc 551
|||| |||||||||||||| ||||||||||||||| |||| |||||| ||||| | ||
Sbjct: 485 acctcaccggcgagaagctgctgtcccccggcgaggaatgcaccaaggtcttcctcggcc 426
Query: 552 tcagcgagggcaagctcatcgaccccatgctc-gactgcctcaaggagtgggacggcaag 610
||||| || |||||||||||||||||||||| || ||||||||||||||| ||||| ||
Sbjct: 425 tcagccagaacaagctcatcgaccccatgctcggagtgcctcaaggagtggaacggcgag 366
Query: 611 cccctgcccatc 622
||||||||||||
Sbjct: 365 cccctgcccatc 354
>gb|AL505417.1|AL505417 AL505417 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08G13V 5', mRNA sequence
Length = 689
Score = 151 bits (76), Expect = 5e-035
Identities = 129/147 (87%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||
Sbjct: 455 gtgttctccaagatcaacaagttcgaggaggagctgcggtcggccctgccgcgggagatc 514
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
||||||| ||||||||||||||||| |||| | ||||| ||| ||||| ||||||||||
Sbjct: 515 gaggccgnccgcgtggccttcgagaacggcacggcgcccatccccaacctgatcaaggag 574
Query: 440 agccggtcgtacccgctgtaccgcttc 466
||| |||||| ||||||||||||||||
Sbjct: 575 agcaggtcgttcccgctgtaccgcttc 601
Score = 109 bits (55), Expect = 2e-022
Identities = 121/143 (84%)
Strand = Plus / Plus
Query: 136 cggcgacctccacagcgcgcgcttcagcgagaaggccctgctcaccgccatcgaccgcga 195
|||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 271 cggcgacctctccagcgcgcgcttcagcgagaagagcctcatcaccgccatcgaccgcga 330
Query: 196 ggcggtgtacgggtactacgacgacccctgcagcgccaactcgcccctgatgaagaagat 255
||| |||| | | ||| ||||||| | ||||||||||||| || |||||| ||||| |
Sbjct: 331 ggccgtgttcagctacgccgacgacgcatgcagcgccaactacccactgatgcagaagct 390
Query: 256 ccgggccgtgctggtggaccacg 278
|| |||||||| ||||||||||
Sbjct: 391 gcgcgccgtgctcgtggaccacg 413
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154,772
Number of Sequences: 312970
Number of extensions: 154772
Number of successful extensions: 48778
Number of sequences better than 0.5: 172
Number of HSP's better than 0.5 without gapping: 169
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 48345
Number of HSP's gapped (non-prelim): 413
length of query: 907
length of database: 175,134,539
effective HSP length: 19
effective length of query: 888
effective length of database: 169,188,109
effective search space: 150239040792
effective search space used: 150239040792
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)