BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.3
(672 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM442103.2|BM442103 EBan01_SQ002_D11_R anther, yellow st... 68 4e-010
gb|AL503842.1|AL503842 AL503842 Hordeum vulgare Barke roots... 40 0.091
gb|AV836804.1|AV836804 AV836804 K. Sato unpublished cDNA li... 38 0.36
gb|CA011287.1|CA011287 HT06A12u HT Hordeum vulgare subsp. v... 38 0.36
gb|CA012648.1|CA012648 HT06A12r HT Hordeum vulgare subsp. v... 38 0.36
gb|CA013737.1|CA013737 HT09F12r HT Hordeum vulgare subsp. v... 38 0.36
gb|CB879336.1|CB879336 HP11M20T HP Hordeum vulgare subsp. v... 38 0.36
>gb|BM442103.2|BM442103 EBan01_SQ002_D11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ002_D11 5', mRNA sequence
Length = 676
Score = 67.9 bits (34), Expect = 4e-010
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 37 ccccaatgtcatcaccgccgagttccgcaccttcatcgagatcgtcttcgagaaccccga 96
|||||| ||||||||||||||| |||||||| ||| || ||||||| |||||||||||
Sbjct: 586 ccccaacgtcatcaccgccgagcaccgcacctacattgaagtcgtctttgagaaccccga 645
Query: 97 gaagagcatagactccctccac 118
|| |||||| ||| || |||||
Sbjct: 646 gaggagcatcgacaccttccac 667
>gb|AL503842.1|AL503842 AL503842 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03J14T 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.091
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 139 cggcgtcgggatgggccccg 158
||||||||||||||||||||
Sbjct: 16 cggcgtcgggatgggccccg 35
>gb|AV836804.1|AV836804 AV836804 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd3l06, mRNA
sequence
Length = 507
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 169 gccggaggtgaggaagacg 187
|||||||||||||||||||
Sbjct: 442 gccggaggtgaggaagacg 460
>gb|CA011287.1|CA011287 HT06A12u HT Hordeum vulgare subsp. vulgare cDNA clone HT06A12
3-PRIME, mRNA sequence
Length = 555
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 59 ttccgcaccttcatcgaga 77
|||||||||||||||||||
Sbjct: 264 ttccgcaccttcatcgaga 246
>gb|CA012648.1|CA012648 HT06A12r HT Hordeum vulgare subsp. vulgare cDNA clone HT06A12
5-PRIME, mRNA sequence
Length = 700
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 59 ttccgcaccttcatcgaga 77
|||||||||||||||||||
Sbjct: 630 ttccgcaccttcatcgaga 648
>gb|CA013737.1|CA013737 HT09F12r HT Hordeum vulgare subsp. vulgare cDNA clone HT09F12
5-PRIME, mRNA sequence
Length = 657
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 59 ttccgcaccttcatcgaga 77
|||||||||||||||||||
Sbjct: 629 ttccgcaccttcatcgaga 647
>gb|CB879336.1|CB879336 HP11M20T HP Hordeum vulgare subsp. vulgare cDNA clone HP11M20
5-PRIME, mRNA sequence
Length = 574
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 169 gccggaggtgaggaagacg 187
|||||||||||||||||||
Sbjct: 75 gccggaggtgaggaagacg 57
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,726
Number of Sequences: 312970
Number of extensions: 77726
Number of successful extensions: 24190
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24181
Number of HSP's gapped (non-prelim): 9
length of query: 672
length of database: 175,134,539
effective HSP length: 19
effective length of query: 653
effective length of database: 169,188,109
effective search space: 110479835177
effective search space used: 110479835177
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)