BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3089980.2.1
(540 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV926645.1|AV926645 AV926645 K. Sato unpublished cDNA li... 38 0.29
gb|AV931547.1|AV931547 AV931547 K. Sato unpublished cDNA li... 38 0.29
>gb|AV926645.1|AV926645 AV926645 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23d11 5', mRNA sequence
Length = 651
Score = 38.2 bits (19), Expect = 0.29
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 206 cgccgccggcctcggcgtc 224
|||||||||||||||||||
Sbjct: 10 cgccgccggcctcggcgtc 28
>gb|AV931547.1|AV931547 AV931547 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23d11 3', mRNA sequence
Length = 663
Score = 38.2 bits (19), Expect = 0.29
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 206 cgccgccggcctcggcgtc 224
|||||||||||||||||||
Sbjct: 663 cgccgccggcctcggcgtc 645
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 96,989
Number of Sequences: 312970
Number of extensions: 96989
Number of successful extensions: 30205
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30202
Number of HSP's gapped (non-prelim): 3
length of query: 540
length of database: 175,134,539
effective HSP length: 19
effective length of query: 521
effective length of database: 169,188,109
effective search space: 88147004789
effective search space used: 88147004789
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)