BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591194.2.1
(591 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ462026.1|AJ462026 AJ462026 S00002 Hordeum vulgare subs... 293 3e-078
gb|AL505038.1|AL505038 AL505038 Hordeum vulgare Barke roots... 264 3e-069
gb|AL502321.1|AL502321 AL502321 Hordeum vulgare Barke roots... 260 5e-068
gb|AJ461534.1|AJ461534 AJ461534 S00002 Hordeum vulgare subs... 48 3e-004
gb|BI948118.1|BI948118 HVSMEl0008E09f Hordeum vulgare spike... 38 0.32
>gb|AJ462026.1|AJ462026 AJ462026 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200079D08F1, mRNA sequence
Length = 300
Score = 293 bits (148), Expect = 3e-078
Identities = 187/200 (93%)
Strand = Plus / Minus
Query: 341 cttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttgggg 400
|||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 236 cttcagagcggcctggtgcggcggccggaggcgcggccgcagagcagcgcgttcttgggg 177
Query: 401 atcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctgg 460
|| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct: 176 atggggttctcgtcccgccacgagttggccggcgagtagacccgcaggtagaactgctgg 117
Query: 461 ccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttgtccagc 520
|| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 116 cccaggtactgcctgccccagctctccgacctcacgttccacatccccacgttgtccagc 57
Query: 521 ggcatgtagatagccgtcca 540
||||||||||| ||||||||
Sbjct: 56 ggcatgtagatcgccgtcca 37
>gb|AL505038.1|AL505038 AL505038 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07D06V 5', mRNA sequence
Length = 694
Score = 264 bits (133), Expect = 3e-069
Identities = 184/200 (92%), Gaps = 1/200 (0%)
Strand = Plus / Minus
Query: 341 cttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttgggg 400
||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 456 cttcagaacggcctggtgcggcggccggaggcgcggccgcagagcagcgcgttcttgggg 397
Query: 401 atcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctgg 460
|| |||||||||| |||||||||||| |||||||||||||| || |||||||||||||||
Sbjct: 396 atggggttctcgtnccgccacgagttggccggcgagtagacccgcaggtagaactgctgg 337
Query: 461 ccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttgtccagc 520
| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 336 tc-aggtactgcctgccccagctctccgacctcacgttccacatccccacgttgtccagc 278
Query: 521 ggcatgtagatagccgtcca 540
||||||||||| ||||||||
Sbjct: 277 ggcatgtagatcgccgtcca 258
>gb|AL502321.1|AL502321 AL502321 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07D06u 3', mRNA sequence
Length = 487
Score = 260 bits (131), Expect = 5e-068
Identities = 184/201 (91%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 341 cttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttgggg 400
||||||| |||||| | ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 265 cttcagaacggcctgntgcggcggccggaggcgcggccgcagagcagcgcgttcttgggg 324
Query: 401 atcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctgg 460
|| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct: 325 atggggttctcgtcccgccacgagttggccggcgagtagacccgcaggtagaactgctgg 384
Query: 461 ccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttgtccagc 520
|| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 cccaggtactgcctgccccagctctccgacctcacgttccacatccccacgttgtccagc 444
Query: 521 ggcatgt-agatagccgtcca 540
|| |||| |||| ||||||||
Sbjct: 445 ggnatgtaagatcgccgtcca 465
>gb|AJ461534.1|AJ461534 AJ461534 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200012C08F1, mRNA sequence
Length = 300
Score = 48.1 bits (24), Expect = 3e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
|||||| |||||||| |||| | ||||| || | ||||||| |||||||||||| |||
Sbjct: 183 ctgctgcccgaggtagtgccggtcccagttcgccgacctcaggttccacatcccttggtt 124
Query: 514 gtccagcg 521
||||||||
Sbjct: 123 gtccagcg 116
>gb|BI948118.1|BI948118 HVSMEl0008E09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0008E09f, mRNA sequence
Length = 874
Score = 38.2 bits (19), Expect = 0.32
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 469 ctgcctggcccagctctcg 487
|||||||||||||||||||
Sbjct: 337 ctgcctggcccagctctcg 355
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 59,504
Number of Sequences: 312970
Number of extensions: 59504
Number of successful extensions: 16318
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16309
Number of HSP's gapped (non-prelim): 8
length of query: 591
length of database: 175,134,539
effective HSP length: 19
effective length of query: 572
effective length of database: 169,188,109
effective search space: 96775598348
effective search space used: 96775598348
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)