BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521825.2.1
(2812 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW983497.2|AW983497 HVSMEg0010N11f Hordeum vulgare pre-a... 761 0.0
gb|BM441900.2|BM441900 EBed07_SQ001_N21_R endosperm, 28 DPA... 753 0.0
gb|BG366769.1|BG366769 HVSMEi0008D20f Hordeum vulgare 20 DA... 676 0.0
gb|BU968566.1|BU968566 HB07O20r BC Hordeum vulgare subsp. v... 664 0.0
gb|BU969855.1|BU969855 HB12M24r BC Hordeum vulgare subsp. v... 638 0.0
gb|BU968118.1|BU968118 HB06H16r BC Hordeum vulgare subsp. v... 628 e-178
gb|BU971976.1|BU971976 HB20D20r BC Hordeum vulgare subsp. v... 597 e-169
gb|BU969303.1|BU969303 HB11C06r BC Hordeum vulgare subsp. v... 557 e-157
gb|BU970604.1|BU970604 HB15C08r BC Hordeum vulgare subsp. v... 539 e-151
gb|BG367041.1|BG367041 HVSMEi0009O06f Hordeum vulgare 20 DA... 504 e-141
gb|BG416474.1|BG416474 HVSMEk0012G24f Hordeum vulgare testa... 470 e-130
gb|BQ472324.1|BQ472324 HB09O20T BC Hordeum vulgare subsp. v... 444 e-123
gb|BM441607.2|BM441607 EBed07_SQ001_A14_R endosperm, 28 DPA... 402 e-110
gb|BG415291.2|BG415291 HVSMEk0005O03f Hordeum vulgare testa... 398 e-109
gb|BU966674.1|BU966674 HB02A08r BC Hordeum vulgare subsp. v... 371 e-101
gb|BU984253.1|BU984253 HF03G17r HF Hordeum vulgare subsp. v... 361 8e-098
gb|BG368110.1|BG368110 HVSMEi0015L13f Hordeum vulgare 20 DA... 303 2e-080
gb|BQ472575.1|BQ472575 HB09C02T BC Hordeum vulgare subsp. v... 254 1e-065
gb|BU968310.1|BU968310 HB07C02r BC Hordeum vulgare subsp. v... 254 1e-065
gb|BU986318.1|BU986318 HF11G13r HF Hordeum vulgare subsp. v... 250 2e-064
gb|BG366114.1|BG366114 HVSMEi0005M22f Hordeum vulgare 20 DA... 236 3e-060
gb|BU975349.1|BU975349 HB30O07r BC Hordeum vulgare subsp. v... 202 5e-050
gb|BU985282.1|BU985282 HF06K19r HF Hordeum vulgare subsp. v... 129 5e-028
gb|AW982901.3|AW982901 HVSMEg0004I06f Hordeum vulgare pre-a... 121 1e-025
gb|BU969620.1|BU969620 HB12B01r BC Hordeum vulgare subsp. v... 101 1e-019
gb|BQ755653.1|BQ755653 EBed07_SQ003_P03_R endosperm, 28 DPA... 72 1e-010
gb|AF064561.1|AF064561 Hordeum vulgare cultivar Bomi starch... 58 2e-006
gb|AV914376.1|AV914376 AV914376 K. Sato unpublished cDNA li... 56 7e-006
gb|BU968738.1|BU968738 HB08H01r BC Hordeum vulgare subsp. v... 56 7e-006
gb|CA022075.1|CA022075 HZ42B15r HZ Hordeum vulgare subsp. v... 56 7e-006
gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch... 56 7e-006
gb|BE196055.1|BE196055 HVSMEh0091D22f Hordeum vulgare 5-45 ... 52 1e-004
gb|BE195628.2|BE195628 HVSMEh0089P20f Hordeum vulgare 5-45 ... 52 1e-004
gb|BE196057.2|BE196057 HVSMEh0091D24f Hordeum vulgare 5-45 ... 52 1e-004
gb|BF065047.1|BF065047 HV_CEb0022L05f Hordeum vulgare seedl... 52 1e-004
gb|CV060003.1|CV060003 BNEL53d1 Barley EST endosperm librar... 46 0.006
gb|CV060106.1|CV060106 BNEL54e11 Barley EST endosperm libra... 46 0.006
gb|BE602527.2|BE602527 HVSMEh0099J22f Hordeum vulgare 5-45 ... 42 0.098
gb|CA030569.1|CA030569 HX07H03r HX Hordeum vulgare subsp. v... 42 0.098
gb|BF065328.2|BF065328 HV_CEb0012C05f Hordeum vulgare seedl... 40 0.39
>gb|AW983497.2|AW983497 HVSMEg0010N11f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010N11f, mRNA sequence
Length = 839
Score = 761 bits (384), Expect = 0.0
Identities = 576/640 (90%)
Strand = Plus / Minus
Query: 854 tcgagcgcattcatcgcttggtcaaacgcattcatgtacttgtaccgcaagtgatcagtg 913
|||||||||||||| ||||| ||||| | ||||||||| |||| | | |||| || ||
Sbjct: 646 tcgagcgcattcatggcttgatcaaaggggttcatgtacctgtatggtaggtgaacaatg 587
Query: 914 tccacaaggctccactgtcgtctgcatttatcatagctccagttgttcccttctcttgga 973
|| || ||||||||| | ||||||||||||||||| |||| |||| |||||||||| |
Sbjct: 586 tcgacgaggctccacgggcgtctgcatttatcataattccaattgtggccttctcttgaa 527
Query: 974 aagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagccatcacct 1033
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 526 aagtcgatccattctgggtggccaaactcattacccataaaattcaagtagccatcacct 467
Query: 1034 ccaagggccattgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaattgta 1093
||||| ||||| ||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 466 ccaagagccatggtgatgaagtgaatcatcttttgaagtgcaatgccacgatcaattgta 407
Query: 1094 ggtgaagcaggctgcaagtctgacatgccagtgtacatttccttgtccatcaggagaaat 1153
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 406 ggtgaagcaggctgcaagtctgacatgccagtatacatttccttgtccatcaagagaaat 347
Query: 1154 gcaatagttttgtcgccaacaatagactgatcatggctctcagcatatgcgatgcatttt 1213
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 346 gccatagtcttgtcgccaacaatagactgatcatggctctcagcatatgcaatgcacttt 287
Query: 1214 tcagtatatctcctgttagtcaaagtatgcgctatttcacccatcgaccactcagagtca 1273
|| |||||||||||||| || |||||||| |||||| ||| ||| ||||| ||| ||||
Sbjct: 286 tccgtatatctcctgttggttaaagtatgtgctattccactcattgaccattcaaggtca 227
Query: 1274 tctttattcttcaggtagtcaatccatctatcagggatagccattgccaggcgatagtca 1333
||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 226 tctttgttcttcaagtagtcaatccatctatcaggtatagccatagccaggcgatagtca 167
Query: 1334 aacccaaccccaccttcatcaactggccggcaaaggaccggcatgcctgaaacatcttca 1393
||||| ||||||||||||||||||| ||| ||||| || ||||||||||||||||||||
Sbjct: 166 aaccctaccccaccttcatcaactgaccgacaaagcactggcatgcctgaaacatcttcc 107
Query: 1394 gcaacaacagttgcttctggcaagagtttgtgcattaaatggtttgcaagcatcatgtaa 1453
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 106 gcaacaacagttgcttctggcaagagtttgtgcattaaatggttcgcgagcatcatgtaa 47
Query: 1454 acaactgcatccacagctgtgtccaaactgaaatattcct 1493
||||||||||| ||| | || ||||||| ||||||||||
Sbjct: 46 acaactgcatctacatcagtatccaaaccaaaatattcct 7
>gb|BM441900.2|BM441900 EBed07_SQ001_N21_R endosperm, 28 DPA, no treatment, cv Optic, EBed07
Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_N21 5', mRNA sequence
Length = 687
Score = 753 bits (380), Expect = 0.0
Identities = 601/675 (89%)
Strand = Plus / Minus
Query: 664 agcatcagagtccagggctactctgtatttcccaggcaaatcgcatcccactttgtagcc 723
|||||| |||||||| ||||| |||| ||||||||||| || ||||| |||| || ||
Sbjct: 677 agcatcggagtccagagctaccttgtacttcccaggcaagtcacatccgacttgntaacc 618
Query: 724 ctcgtaagttttcttgggatggaaattgaaaacaaaaactaaatctccacgttcaaagac 783
|| || ||||| ||||||||||||||||| || ||||| | ||||||||||||||| ||
Sbjct: 617 atcataggttttattgggatggaaattgaagacgaaaaccagatctccacgttcaaatac 558
Query: 784 aataaccttttcctcatcgttcatgtcgctgacgatctgctttgacgacgaaaggaagga 843
||||||||| | || || |||||||||||||| ||||||||||| || || ||||||||
Sbjct: 557 aataaccttcttttcctcattcatgtcgctgacaatctgctttgatgatgataggaagga 498
Query: 844 aaatctctcatcgagcgcattcatcgcttggtcaaacgcattcatgtacttgtaccgcaa 903
|||| | || |||||||||||||| ||||| ||||| || |||||||||||||| || |
Sbjct: 497 aaatttgtcgtcgagcgcattcattgcttgatcaaatgcgttcatgtacttgtatcgtag 438
Query: 904 gtgatcagtgtccacaaggctccactgtcgtctgcatttatcatagctccagttgttccc 963
||||||| |||| || ||||||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct: 437 gtgatcaatgtcgacgaggctccactggcgtctgcatttatcataactccaattgttgcc 378
Query: 964 ttctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaattcaagta 1023
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 377 ttctcttggaaagtcgatccattctgggtggccaaactcattacccataaaattcaagta 318
Query: 1024 gccatcacctccaagggccattgtgatgaagtgaatcatcttttggagtgcaatccctcg 1083
||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || ||
Sbjct: 317 gccatcacctccaagagccatggtgatgaagtgaatcatcttttgaagtgcaatgccacg 258
Query: 1084 atcaattgtaggtgaagcaggctgcaagtctgacatgccagtgtacatttccttgtccat 1143
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 257 atcaattgtaggtgaagcaggctgcaagtctgacatgccagtatacatttccttgtccat 198
Query: 1144 caggagaaatgcaatagttttgtcgccaacaatagactgatcatggctctcagcatatgc 1203
|| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 caagagaaatgccatagtcttgtcgccaacaatagactgatcatggctctcagcatatgc 138
Query: 1204 gatgcatttttcagtatatctcctgttagtcaaagtatgcgctatttcacccatcgacca 1263
||||| ||||| |||||||||||||| || |||||||| |||||| ||| ||| |||||
Sbjct: 137 aatgcacttttccgtatatctcctgttggttaaagtatgtgctattccactcattgacca 78
Query: 1264 ctcagagtcatctttattcttcaggtagtcaatccatctatcagggatagccattgccag 1323
||| ||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 77 ttcaaggtcatctttgttcttcaagtagtcaatccatctatcaggtatagccatagccag 18
Query: 1324 gcgatagtcaaaccc 1338
|||||||||||||||
Sbjct: 17 gcgatagtcaaaccc 3
>gb|BG366769.1|BG366769 HVSMEi0008D20f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0008D20f, mRNA sequence
Length = 494
Score = 676 bits (341), Expect = 0.0
Identities = 455/493 (92%)
Strand = Plus / Minus
Query: 972 gaaagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagccatcac 1031
||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 494 gaaagtcgatccattttgggtggccaaactcattacccataaaattcaagtagccatcac 435
Query: 1032 ctccaagggccattgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaattg 1091
||||||| ||||| ||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 434 ctccaagagccatggtgatgaagtgaatcatcttttgaagtgcaatgccacgatcaattg 375
Query: 1092 taggtgaagcaggctgcaagtctgacatgccagtgtacatttccttgtccatcaggagaa 1151
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 374 taggtgaagcaggctgcaagtctgacatgccagtatacatttccttgtccatcaagagaa 315
Query: 1152 atgcaatagttttgtcgccaacaatagactgatcatggctctcagcatatgcgatgcatt 1211
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 314 atgccatagtcttgtcgccaacaatagactgatcatggctctcagcatatgcaatgcact 255
Query: 1212 tttcagtatatctcctgttagtcaaagtatgcgctatttcacccatcgaccactcagagt 1271
|||| |||||||||||||| || |||||||| |||||| ||| ||| ||||| ||| ||
Sbjct: 254 tttccgtatatctcctgttggttaaagtatgtgctattccactcattgaccattcaaggt 195
Query: 1272 catctttattcttcaggtagtcaatccatctatcagggatagccattgccaggcgatagt 1331
||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 194 catctttgttcttcaagtagtcaatccatctatcaggtatagccatagccaggcgatagt 135
Query: 1332 caaacccaaccccaccttcatcaactggccggcaaaggaccggcatgcctgaaacatctt 1391
||||||| ||||||||||||||||||| ||| ||||| || ||||||| |||||||||||
Sbjct: 134 caaaccctaccccaccttcatcaactgaccgacaaagcactggcatgcttgaaacatctt 75
Query: 1392 cagcaacaacagttgcttctggcaagagtttgtgcattaaatggtttgcaagcatcatgt 1451
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 74 ccgcaacaacagttgcttctggcaagagtttgtgcattaaatggttcgcgagcatcatgt 15
Query: 1452 aaacaactgcatc 1464
|||||||||||||
Sbjct: 14 aaacaactgcatc 2
>gb|BU968566.1|BU968566 HB07O20r BC Hordeum vulgare subsp. vulgare cDNA clone HB07O20
5-PRIME, mRNA sequence
Length = 575
Score = 664 bits (335), Expect = 0.0
Identities = 506/563 (89%)
Strand = Plus / Minus
Query: 1073 gcaatccctcgatcaattgtaggtgaagcaggctgcaagtctgacatgccagtgtacatt 1132
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 575 gcaatgccacgatcaattgtaggtgaagcaggctgcaagtctgacatgccagtatacatt 516
Query: 1133 tccttgtccatcaggagaaatgcaatagttttgtcgccaacaatagactgatcatggctc 1192
||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 515 tccttgtccatcaagagaaatgccatagtcttgtcgccaacaatagactgatcatggctc 456
Query: 1193 tcagcatatgcgatgcatttttcagtatatctcctgttagtcaaagtatgcgctatttca 1252
||||||||||| ||||| ||||| |||||||||||||| || |||||||| |||||| ||
Sbjct: 455 tcagcatatgcaatgcacttttccgtatatctcctgttggttaaagtatgtgctattcca 396
Query: 1253 cccatcgaccactcagagtcatctttattcttcaggtagtcaatccatctatcagggata 1312
| ||| ||||| ||| ||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 395 ctcattgaccattcaaggtcatctttgttcttcaagtagtcaatccatctatcaggtata 336
Query: 1313 gccattgccaggcgatagtcaaacccaaccccaccttcatcaactggccggcaaaggacc 1372
||||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||
Sbjct: 335 gccatagccaggcgatagtcaaaccctaccccaccttcatcaactgaccgacaaagcact 276
Query: 1373 ggcatgcctgaaacatcttcagcaacaacagttgcttctggcaagagtttgtgcattaaa 1432
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 275 ggcatgcctgaaacatcttccgcaacaatagttgcttctggcaagagtttgtgcattaaa 216
Query: 1433 tggtttgcaagcatcatgtaaacaactgcatccacagctgtgtccaaactgaaatattcc 1492
||||| || ||||||||||||||||||||||| ||| | || ||||||| ||||||||||
Sbjct: 215 tggttcgcgagcatcatgtaaacaactgcatctacatcagtatccaaaccgaaatattcc 156
Query: 1493 tggtagtttccagtaaaccccacattgataccatggtgatgatacagcattgatgtaact 1552
| ||| | ||||| || || ||||||||||||||||| ||| ||||| ||||| ||
Sbjct: 155 ttgtaatctccagagaatgacatattgataccatggtgattatatagcatggatgttacc 96
Query: 1553 ccatcaaatcggaagccatcaaacatgaattcatccaaccaatatctcaggttagaaaga 1612
|| ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||
Sbjct: 95 ccgtcaaatcggaagccatcaaacatgaattcgtccatccaatatctcagattagaaaga 36
Query: 1613 agaaaccttaatacctcccagtt 1635
||||| | ||| |||||||||||
Sbjct: 35 agaaatcgtaagacctcccagtt 13
>gb|BU969855.1|BU969855 HB12M24r BC Hordeum vulgare subsp. vulgare cDNA clone HB12M24
5-PRIME, mRNA sequence
Length = 507
Score = 638 bits (322), Expect = 0.0
Identities = 451/494 (91%)
Strand = Plus / Minus
Query: 854 tcgagcgcattcatcgcttggtcaaacgcattcatgtacttgtaccgcaagtgatcagtg 913
|||||||||||||| ||||| ||||| || |||||||||||||| || | ||||||| ||
Sbjct: 505 tcgagcgcattcattgcttgatcaaatgcgttcatgtacttgtatcgtaggtgatcaatg 446
Query: 914 tccacaaggctccactgtcgtctgcatttatcatagctccagttgttcccttctcttgga 973
|| || ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 445 tcgacgaggctccactggcgtctgcatttatcataactccaattgttgccttctcttgga 386
Query: 974 aagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagccatcacct 1033
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 aagtcgatccattctgggtggccaaactcattacccataaaattcaagtagccatcacct 326
Query: 1034 ccaagggccattgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaattgta 1093
||||| ||||| ||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 325 ccaagagccatggtgatgaagtgaatcatcttttgaagtgcaatgccacgatcaattgta 266
Query: 1094 ggtgaagcaggctgcaagtctgacatgccagtgtacatttccttgtccatcaggagaaat 1153
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 265 ggtgaagcaggctgcaagtctgacatgccagtatacatttccttgtccatcaagagaaat 206
Query: 1154 gcaatagttttgtcgccaacaatagactgatcatggctctcagcatatgcgatgcatttt 1213
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 205 gccatagtcttgtcgccaacaatagactgatcatggctctcagcatatgcaatgcacttt 146
Query: 1214 tcagtatatctcctgttagtcaaagtatgcgctatttcacccatcgaccactcagagtca 1273
|| |||||||||||||| || |||||||| |||||| ||| ||| ||||| ||| ||||
Sbjct: 145 tccgtatatctcctgttggttaaagtatgtgctattccactcattgaccattcaaggtca 86
Query: 1274 tctttattcttcaggtagtcaatccatctatcagggatagccattgccaggcgatagtca 1333
||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 85 tctttgttcttcaagtagtcaatccatctatcaggtatagccatagccaggcgatagtca 26
Query: 1334 aacccaaccccacc 1347
||||| ||||||||
Sbjct: 25 aaccctaccccacc 12
>gb|BU968118.1|BU968118 HB06H16r BC Hordeum vulgare subsp. vulgare cDNA clone HB06H16
5-PRIME, mRNA sequence
Length = 498
Score = 628 bits (317), Expect = e-178
Identities = 446/489 (91%)
Strand = Plus / Minus
Query: 859 cgcattcatcgcttggtcaaacgcattcatgtacttgtaccgcaagtgatcagtgtccac 918
||||||||| ||||| ||||| || |||||||||||||| || | ||||||| |||| ||
Sbjct: 498 cgcattcattgcttgatcaaatgcgttcatgtacttgtatcgtaggtgatcaatgtcgac 439
Query: 919 aaggctccactgtcgtctgcatttatcatagctccagttgttcccttctcttggaaagtc 978
||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 438 gaggctccactggcgtctgcatttatcataactccaattgttgccttctcttggaaagtc 379
Query: 979 aatccattctgggtgaccaaactcatttcccataaaattcaagtagccatcacctccaag 1038
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 378 gatccattctgggtggccaaactcattacccataaaattcaagtagccatcacctccaag 319
Query: 1039 ggccattgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaattgtaggtga 1098
||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct: 318 agccatggtgatgaagtgaatcatcttttgaagtgcaatgccacgatcaattgtaggtga 259
Query: 1099 agcaggctgcaagtctgacatgccagtgtacatttccttgtccatcaggagaaatgcaat 1158
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct: 258 agcaggctgcaagtctgacatgccagtatacatttccttgtccatcaagagaaatgccat 199
Query: 1159 agttttgtcgccaacaatagactgatcatggctctcagcatatgcgatgcatttttcagt 1218
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 198 agtcttgtcgccaacaatagactgatcatggctctcagcatatgcaatgcacttttccgt 139
Query: 1219 atatctcctgttagtcaaagtatgcgctatttcacccatcgaccactcagagtcatcttt 1278
|||||||||||| || |||||||| |||||| ||| ||| ||||| ||| |||||||||
Sbjct: 138 atatctcctgttggttaaagtatgtgctattccactcattgaccattcaaggtcatcttt 79
Query: 1279 attcttcaggtagtcaatccatctatcagggatagccattgccaggcgatagtcaaaccc 1338
||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 78 gttcttcaagtagtcaatccatctatcaggtatagccatagccaggcgatagtcaaaccc 19
Query: 1339 aaccccacc 1347
||||||||
Sbjct: 18 taccccacc 10
>gb|BU971976.1|BU971976 HB20D20r BC Hordeum vulgare subsp. vulgare cDNA clone HB20D20
5-PRIME, mRNA sequence
Length = 515
Score = 597 bits (301), Expect = e-169
Identities = 442/489 (90%)
Strand = Plus / Minus
Query: 803 ttcatgtcgctgacgatctgctttgacgacgaaaggaaggaaaatctctcatcgagcgca 862
|||||||||||||| ||||||||||| || || |||||||||||| | || |||||||||
Sbjct: 499 ttcatgtcgctgacaatctgctttgatgatgataggaaggaaaatttgtcgtcgagcgca 440
Query: 863 ttcatcgcttggtcaaacgcattcatgtacttgtaccgcaagtgatcagtgtccacaagg 922
||||| ||||| ||||| || |||||||||||||| || | ||||||| |||| || |||
Sbjct: 439 ttcattgcttgatcaaatgcgttcatgtacttgtatcgtaggtgatcaatgtcgacgagg 380
Query: 923 ctccactgtcgtctgcatttatcatagctccagttgttcccttctcttggaaagtcaatc 982
|||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| |||
Sbjct: 379 ctccactggcgtctgcatttatcataactccaattgttgccttctcttggaaagtcgatc 320
Query: 983 cattctgggtgaccaaactcatttcccataaaattcaagtagccatcacctccaagggcc 1042
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 319 cattctgggtggccaaactcattacccataaaattcaagtagccatcacctccaagagcc 260
Query: 1043 attgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaattgtaggtgaagca 1102
|| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct: 259 atggtgatgaagtgaatcatcttttgaagtgcaatgccacgatcaattgtaggtgaagca 200
Query: 1103 ggctgcaagtctgacatgccagtgtacatttccttgtccatcaggagaaatgcaatagtt 1162
||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||
Sbjct: 199 ggctgcaagtctgacatgccagtatacatttccttgtccatcaagagaaatgccatagtc 140
Query: 1163 ttgtcgccaacaatagactgatcatggctctcagcatatgcgatgcatttttcagtatat 1222
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 139 ttgtcgccaacaatagactgatcatggctctcagcatatgcaatgcacttttccgtatat 80
Query: 1223 ctcctgttagtcaaagtatgcgctatttcacccatcgaccactcagagtcatctttattc 1282
|||||||| || |||||||| |||||| ||| ||| ||||| ||| ||||||||| |||
Sbjct: 79 ctcctgttggttaaagtatgtgctattccactcattgaccattcaaggtcatctttgttc 20
Query: 1283 ttcaggtag 1291
|||| ||||
Sbjct: 19 ttcaagtag 11
>gb|BU969303.1|BU969303 HB11C06r BC Hordeum vulgare subsp. vulgare cDNA clone HB11C06
5-PRIME, mRNA sequence
Length = 484
Score = 557 bits (281), Expect = e-157
Identities = 419/465 (90%)
Strand = Plus / Minus
Query: 1084 atcaattgtaggtgaagcaggctgcaagtctgacatgccagtgtacatttccttgtccat 1143
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 484 atcaattgtaggtgaagcaggctgcaagtctgacatgccagtatacatttccttgtccat 425
Query: 1144 caggagaaatgcaatagttttgtcgccaacaatagactgatcatggctctcagcatatgc 1203
|| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caagagaaatgccatagtcttgtcgccaacaatagactgatcatggctctcagcatatgc 365
Query: 1204 gatgcatttttcagtatatctcctgttagtcaaagtatgcgctatttcacccatcgacca 1263
||||| ||||| |||||||||||||| || |||||||| |||||| ||| ||| |||||
Sbjct: 364 aatgcacttttccgtatatctcctgttggttaaagtatgtgctattccactcattgacca 305
Query: 1264 ctcagagtcatctttattcttcaggtagtcaatccatctatcagggatagccattgccag 1323
||| ||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 304 ttcaaggtcatctttgttcttcaagtagtcaatccatctatcaggtatagccatagccag 245
Query: 1324 gcgatagtcaaacccaaccccaccttcatcaactggccggcaaaggaccggcatgcctga 1383
||||||||||||||| ||||||||||||||||||| ||| ||||| || |||||||||||
Sbjct: 244 gcgatagtcaaaccctaccccaccttcatcaactgaccgacaaagcactggcatgcctga 185
Query: 1384 aacatcttcagcaacaacagttgcttctggcaagagtttgtgcattaaatggtttgcaag 1443
||||||||| ||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct: 184 aacatcttccgcaacaatagttgcttctggcaagagtttgtgcattaaatggttcgcgag 125
Query: 1444 catcatgtaaacaactgcatccacagctgtgtccaaactgaaatattcctggtagtttcc 1503
||||||||||||||||||||| ||| | || ||||||| ||||||||||| ||| | |||
Sbjct: 124 catcatgtaaacaactgcatctacatcagtatccaaaccgaaatattccttgtaatctcc 65
Query: 1504 agtaaaccccacattgataccatggtgatgatacagcattgatgt 1548
|| || || ||||||||||||||||| ||| ||||| |||||
Sbjct: 64 agagaatgacatattgataccatggtgattatatagcatggatgt 20
>gb|BU970604.1|BU970604 HB15C08r BC Hordeum vulgare subsp. vulgare cDNA clone HB15C08
5-PRIME, mRNA sequence
Length = 578
Score = 539 bits (272), Expect = e-151
Identities = 466/531 (87%)
Strand = Plus / Minus
Query: 1516 attgataccatggtgatgatacagcattgatgtaactccatcaaatcggaagccatcaaa 1575
||||||||||||||||| ||| ||||| ||||| || || ||||||||||||||||||||
Sbjct: 551 attgataccatggtgattatatagcatggatgttacnccgtcaaatcggaagccatcaaa 492
Query: 1576 catgaattcatccaaccaatatctcaggttagaaagaagaaaccttaatacctcccagtt 1635
||||||||| |||| |||||||||||| |||||||||||||| | ||| |||||||||||
Sbjct: 491 catgaattcgtccatccaatatctcagattagaaagaagaaatcgtaagacctcccagtt 432
Query: 1636 agcatagttgaacagccgactatcccaaagtttatgataacctctatctcccgcatgaaa 1695
|||||||||||||| || |||||||| ||||||||||| || || ||||| | || ||
Sbjct: 431 ggcatagttgaacaggcggctatcccacagtttatgatagcccctttctcctgtgtggaa 372
Query: 1696 ataggactcttgggtgctttgtccaacatcatagccatttaaaccatctgtgacattatt 1755
||||||||| || ||| |||| ||||||||||||||||||| ||||||||| | |||| |
Sbjct: 371 ataggactcctgtgtgttttgcccaacatcatagccatttagaccatctgtcatattact 312
Query: 1756 acttgcatggctatggacaacatccatcagaactcgcaaacccaaactgtgtgccttatc 1815
|| ||||||||||||||||||||||||||||| |||| || ||||| |||||||| ||
Sbjct: 311 gctcgcatggctatggacaacatccatcagaacacgcagccctaaactatgtgccttgtc 252
Query: 1816 aacaagatatttgaggtcctctggtgtgcctgatctgctgctaaccgcaaagaaatttgt 1875
||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||| ||
Sbjct: 251 aacaagatatttgagatcctctggcgtgcctgatctgctgctagccgcgaagaaattcgt 192
Query: 1876 cacatggtacccgaaagaagcatagtacgaatgctccataactgccatcaactgaactgt 1935
|||||||||||| ||||||||||| || ||||| ||| | | ||||||||||||||||||
Sbjct: 191 cacatggtacccaaaagaagcataatatgaatgttccttgattgccatcaactgaactgt 132
Query: 1936 gttgtagttatttgctcgtatgcgtggcaacacattgtctgcaaattccctatatgtgct 1995
||||||||||||||| || ||||||||||||||||||||||||||| || ||||||||
Sbjct: 131 gttgtagttatttgcctttacgcgtggcaacacattgtctgcaaattctctgtatgtgct 72
Query: 1996 tactgctggcttttcaccactcatacctacatgggcttcatagatacgtgg 2046
|||| | ||||| ||||||||||| || ||||| || ||||| ||||||||
Sbjct: 71 tacttcaggcttctcaccactcatcccgacatgagcctcatatatacgtgg 21
>gb|BG367041.1|BG367041 HVSMEi0009O06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0009O06f, mRNA sequence
Length = 764
Score = 504 bits (254), Expect = e-141
Identities = 372/410 (90%), Gaps = 1/410 (0%)
Strand = Plus / Minus
Query: 854 tcgagcgcattcatcgcttggtcaaacgcattcatgtacttgtaccgcaagtgatcagtg 913
|||||||||||||| | ||| ||||| || |||||| ||||||| || | ||||||| ||
Sbjct: 410 tcgagcgcattcattgtttgatcaaatgcgttcatgcacttgtatcgtaggtgatcaatg 351
Query: 914 tccacaaggctccactgtcgtctgcatttatcatagctccagttgttcccttctcttgga 973
|| || ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 350 tcgacgaggctccactggcgtctgcatttatcataactccaattgttgccttctcttgga 291
Query: 974 aagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagccatcacct 1033
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 290 aagtcgatccattctgggtggccaaactcattacccataaaattcaagtagccatcacct 231
Query: 1034 ccaagggccattgtgatgaagtgaatcatcttttggagtgcaatccctcgatcaattgta 1093
||||| ||||| ||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 230 ccaagagccatggtgatgaagtgaatcatcttttgaagtgcaatgccacgatcaattgta 171
Query: 1094 ggtgaagcaggctgcaagtctgacatgccagtgtacatttccttgtccatcaggagaaat 1153
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 170 ggtgaagcaggctgcaagtctgacatgccagtatacatttccttgtccatcaagagaaat 111
Query: 1154 gcaatagttttgtcgccaacaatagactgatcatggctctcagcatatgcgatgca-ttt 1212
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 110 gccatagtcttgtcgccaacaatagactgatcatggctctcagcatatgcaatgcacttt 51
Query: 1213 ttcagtatatctcctgttagtcaaagtatgcgctatttcacccatcgacc 1262
| | |||||||||||||| || |||||||| |||||| ||| ||| ||||
Sbjct: 50 tccggtatatctcctgttggttaaagtatgtgctattccactcattgacc 1
>gb|BG416474.1|BG416474 HVSMEk0012G24f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0012G24f, mRNA sequence
Length = 804
Score = 470 bits (237), Expect = e-130
Identities = 448/517 (86%), Gaps = 1/517 (0%)
Strand = Plus / Minus
Query: 638 actcttccatgtccaccgaagaccagagcatcagagtccagggctactctgtatttccca 697
||||| ||||||||||| || | | |||||| |||||||| ||||| |||| ||||||
Sbjct: 517 actctaccatgtccaccaaacatcgaagcatcggagtccagagctaccttgtacttccca 458
Query: 698 ggcaaatcgcatcccactttgtagccctcgtaagttttcttgggatggaaattgaaaaca 757
||||| || ||||| |||||||| || || || ||||| ||||||||| ||||||| ||
Sbjct: 457 ggcaagtcacatccgactttgtaaccatcataggttttattgggatgggaattgaagacg 398
Query: 758 aaaactaaatctccacgttcaaagacaataaccttttcctcatcgttcatgtcgctgacg 817
||||| | ||||||||||||||| ||||||||||| | || || ||||||||||||||
Sbjct: 397 aaaaccagatctccacgttcaaatacaataaccttcttttcctcattcatgtcgctgaca 338
Query: 818 atctgctttgacgacgaaaggaaggaaaatctctcatcgagcgcattcatcgcttggtca 877
||||||||||| || || |||||||||||| | || |||||||||||||| ||||| |||
Sbjct: 337 atctgctttgatgatgataggaaggaaaatttgtcgtcgagcgcattcattgcttgatca 278
Query: 878 aacgcattcatgtacttgtaccgcaagtgatcagtgtccacaaggctccactgtcgtctg 937
|| || |||||||||||||| || | ||||||| |||| || ||||||||||| ||||||
Sbjct: 277 aatgcgttcatgtacttgtatcgtaggtgatcaatgtcgacgaggctccactggcgtctg 218
Query: 938 catttatcatagctccagttgttcccttctcttggaaagtcaatccattctgggtgacca 997
||||||||||| ||||| ||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 217 catttatcataactccaattgttgccttctcttggatagtcgatccattctgggtggcca 158
Query: 998 aactcatttcccataaaattcaagtagccatcacctccaagggccattgtgatgaagtga 1057
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 157 aactcattacccataaaattcaagtagccatcacctccaagagccatggtgatgaagtga 98
Query: 1058 atcatcttttggagtgcaatccctcgatcaattgtaggtgaagcaggctgcaagtctgac 1117
|||||||| || ||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 97 atcatcttgtgaagtgcaacgccacgatcgcttgtaggtgaagcaggctgcaagtctgac 38
Query: 1118 atgccagtgtacat-ttccttgtccatcaggagaaat 1153
| |||||| ||||| ||||||||||||| |||||||
Sbjct: 37 aggccagtatacatattccttgtccatcgagagaaat 1
>gb|BQ472324.1|BQ472324 HB09O20T BC Hordeum vulgare subsp. vulgare cDNA clone HB09O20
5-PRIME, mRNA sequence
Length = 526
Score = 444 bits (224), Expect = e-123
Identities = 335/372 (90%)
Strand = Plus / Minus
Query: 1122 cagtgtacatttccttgtccatcaggagaaatgcaatagttttgtcgccaacaatagact 1181
|||| ||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||
Sbjct: 526 cagtatacatttccttgtccatcaagagaaatgccatagtcttgtcgccagcaatagact 467
Query: 1182 gatcatggctctcagcatatgcgatgcatttttcagtatatctcctgttagtcaaagtat 1241
|||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||||
Sbjct: 466 gatcatggctctcagcatatgcaatgcacttttccgtatatctcctgttggttaaagtat 407
Query: 1242 gcgctatttcacccatcgaccactcagagtcatctttattcttcaggtagtcaatccatc 1301
| |||||| ||| ||| ||||| ||| ||||||||| ||||||| ||||||||||||||
Sbjct: 406 gtgctattccactcattgaccattcaaggtcatctttgttcttcaagtagtcaatccatc 347
Query: 1302 tatcagggatagccattgccaggcgatagtcaaacccaaccccaccttcatcaactggcc 1361
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 346 tatcaggtatagccatagccaggcgatagtcaaaccctaccccaccttcatcaactgacc 287
Query: 1362 ggcaaaggaccggcatgcctgaaacatcttcagcaacaacagttgcttctggcaagagtt 1421
| ||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 286 gacaaagcactggcatgcctgaaacatcttccgcaacaatagttgcttctggcaagagtt 227
Query: 1422 tgtgcattaaatggtttgcaagcatcatgtaaacaactgcatccacagctgtgtccaaac 1481
||| ||||||||||| || ||||||||||||||||||||||| ||| | || |||||||
Sbjct: 226 tgtaaattaaatggttcgcgagcatcatgtaaacaactgcatctacatcagtatccaaac 167
Query: 1482 tgaaatattcct 1493
|||||||||||
Sbjct: 166 cgaaatattcct 155
Score = 143 bits (72), Expect = 4e-032
Identities = 108/120 (90%)
Strand = Plus / Minus
Query: 1516 attgataccatggtgatgatacagcattgatgtaactccatcaaatcggaagccatcaaa 1575
||||||||||||||||| ||| ||||| ||||| || || ||||||||||||||||||||
Sbjct: 132 attgataccatggtgattatatagcatggatgttaccccgtcaaatcggaagccatcaaa 73
Query: 1576 catgaattcatccaaccaatatctcaggttagaaagaagaaaccttaatacctcccagtt 1635
||||||||| |||| |||||||||||| |||||||||||||| | ||| |||||||||||
Sbjct: 72 catgaattcgtccatccaatatctcagattagaaagaagaaatcgtaagacctcccagtt 13
>gb|BM441607.2|BM441607 EBed07_SQ001_A14_R endosperm, 28 DPA, no treatment, cv Optic, EBed07
Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_A14 5', mRNA sequence
Length = 638
Score = 402 bits (203), Expect = e-110
Identities = 434/511 (84%)
Strand = Plus / Minus
Query: 1272 catctttattcttcaggtagtcaatccatctatcagggatagccattgccaggcgatagt 1331
||||||| ||||| | |||||| ||| ||||||| || |||||||| ||| |||||||||
Sbjct: 530 catctttgttcttaaagtagtcgatcaatctatctggaatagccatagcctggcgatagt 471
Query: 1332 caaacccaaccccaccttcatcaactggccggcaaaggaccggcatgcctgaaacatctt 1391
||||||| || |||||||||||||| || | ||||| | |||||||| ||||||||||
Sbjct: 470 caaaccctactccaccttcatcaaccagctgacaaagaattggcatgccagaaacatctt 411
Query: 1392 cagcaacaacagttgcttctggcaagagtttgtgcattaaatggtttgcaagcatcatgt 1451
| |||| || |||||||||||||| ||||||||| ||||||||||| || | ||||||||
Sbjct: 410 ctgcaataatagttgcttctggcaggagtttgtgtattaaatggttagccaacatcatgt 351
Query: 1452 aaacaactgcatccacagctgtgtccaaactgaaatattcctggtagtttccagtaaacc 1511
||| || |||||| ||| || ||||||| ||||| |||| || |||||||| |||
Sbjct: 350 aaataattgcatcaacattggtatccaaaccaaaatactccttataatttccagtgaacg 291
Query: 1512 ccacattgataccatggtgatgatacagcattgatgtaactccatcaaatcggaagccat 1571
|| |||||| |||||||||| || ||||| |||||||| |||||||||| |||||| |
Sbjct: 290 tcatattgatgccatggtgattgtatagcatggatgtaaccccatcaaatctgaagccgt 231
Query: 1572 caaacatgaattcatccaaccaatatctcaggttagaaagaagaaaccttaatacctccc 1631
|||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct: 230 caaacatgaattcatccatccaatatctcagattggaaagaagaaaccttaatacctccc 171
Query: 1632 agttagcatagttgaacagccgactatcccaaagtttatgataacctctatctcccgcat 1691
| || | |||||||||||| || |||||||| ||||||||||| || || ||||| |
Sbjct: 170 aattcgtatagttgaacagacggctatcccacagtttatgatagcccctgtctcctgtgc 111
Query: 1692 gaaaataggactcttgggtgctttgtccaacatcatagccatttaaaccatctgtgacat 1751
|||||| |||||||| | |||||||||||||||||||||||||| |||||| || ||||
Sbjct: 110 aaaaatatgactcttgtgcgctttgtccaacatcatagccatttagaccatccgtcacat 51
Query: 1752 tattacttgcatggctatggacaacatccat 1782
| || ||||||||||||||||||||||||||
Sbjct: 50 ttttgcttgcatggctatggacaacatccat 20
>gb|BG415291.2|BG415291 HVSMEk0005O03f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0005O03f, mRNA sequence
Length = 993
Score = 398 bits (201), Expect = e-109
Identities = 386/445 (86%), Gaps = 2/445 (0%)
Strand = Plus / Minus
Query: 937 gcatttatcatagctccagttgttcccttctcttggaaagtcaatccattctgggtgacc 996
|||||||||||| || || ||||| |||| | ||||||||| |||| || ||| | ||
Sbjct: 444 gcatttatcataacttcaattgttgcctttttttggaaagttgatccttttgggggggcc 385
Query: 997 aaactcatttccc-ataaaattcaagtagccatcacctccaagggccattgtgatgaagt 1055
||| ||||| ||| ||||| || | ||||||||||||| |||| ||||| |||| ||||
Sbjct: 384 aaattcattaccccataaatttaaggtagccatcaccttcaagagccatggtgagaaagt 325
Query: 1056 gaatcatcttttggagtgcaatccctcgatcaattgtaggtgaagcaggctgcaagtctg 1115
|| | || ||||| ||||||| || ||||||||| ||||| ||||||||||||||| ||
Sbjct: 324 gatttattttttgaagtgcaaagccacgatcaatt-taggttaagcaggctgcaagtttg 266
Query: 1116 acatgccagtgtacatttccttgtccatcaggagaaatgcaatagttttgtcgccaacaa 1175
|||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 265 acatgccagtatacatttccttgtccatcaagagaaatgccatagttttgtcgccaacaa 206
Query: 1176 tagactgatcatggctctcagcatatgcgatgcatttttcagtatatctcctgttagtca 1235
|||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||| || |
Sbjct: 205 tagactgatcatggttctcagcatatgcaatgcacttttccgtatatctcctgttggtta 146
Query: 1236 aagtatgcgctatttcacccatcgaccactcagagtcatctttattcttcaggtagtcaa 1295
||||||| |||||| ||| ||| ||||| ||| ||||||||| ||||||| ||||||||
Sbjct: 145 aagtatgtgctattccactcattgaccattcaaggtcatctttgttcttcaagtagtcaa 86
Query: 1296 tccatctatcagggatagccattgccaggcgatagtcaaacccaaccccaccttcatcaa 1355
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 85 tccatctatcaggtatagccatagccaggcgatagtcaaaccctaccccaccttcatcaa 26
Query: 1356 ctggccggcaaaggaccggcatgcc 1380
||| ||| ||||| || ||||||||
Sbjct: 25 ctgaccgacaaagcactggcatgcc 1
>gb|BU966674.1|BU966674 HB02A08r BC Hordeum vulgare subsp. vulgare cDNA clone HB02A08
5-PRIME, mRNA sequence
Length = 407
Score = 371 bits (187), Expect = e-101
Identities = 322/367 (87%)
Strand = Plus / Minus
Query: 1713 tttgtccaacatcatagccatttaaaccatctgtgacattattacttgcatggctatgga 1772
|||| ||||||||||||||||||| ||||||||| | |||| | || |||||||||||||
Sbjct: 399 tttgcccaacatcatagccatttagaccatctgtcatattactgctcgcatggctatgga 340
Query: 1773 caacatccatcagaactcgcaaacccaaactgtgtgccttatcaacaagatatttgaggt 1832
|||||||||||||||| |||| || ||||| |||||||| ||||||||||||||||| |
Sbjct: 339 caacatccatcagaacacgcagccctaaactatgtgccttgtcaacaagatatttgagat 280
Query: 1833 cctctggtgtgcctgatctgctgctaaccgcaaagaaatttgtcacatggtacccgaaag 1892
||||||| |||||||||||||||||| |||| |||||||| |||||||||||||| ||||
Sbjct: 279 cctctggcgtgcctgatctgctgctagccgcgaagaaattcgtcacatggtacccaaaag 220
Query: 1893 aagcatagtacgaatgctccataactgccatcaactgaactgtgttgtagttatttgctc 1952
||||||| || ||||| ||| | | |||||||||||||||||||||||||||||||||
Sbjct: 219 aagcataatatgaatgttccttgattgccatcaactgaactgtgttgtagttatttgcct 160
Query: 1953 gtatgcgtggcaacacattgtctgcaaattccctatatgtgcttactgctggcttttcac 2012
|| ||||||||||||||||||||||||||| || |||||||||||| | ||||| ||||
Sbjct: 159 ttacgcgtggcaacacattgtctgcaaattctctgtatgtgcttacttcaggcttctcac 100
Query: 2013 cactcatacctacatgggcttcatagatacgtggagcagcaggctttgaaggccgaggat 2072
||||||| || ||||| || ||||| |||||||| ||| | ||||| |||||||||||
Sbjct: 99 cactcatcccgacatgagcctcatatatacgtggggcatctggcttctgaggccgaggat 40
Query: 2073 gcttaaa 2079
|||||||
Sbjct: 39 gcttaaa 33
>gb|BU984253.1|BU984253 HF03G17r HF Hordeum vulgare subsp. vulgare cDNA clone HF03G17
5-PRIME, mRNA sequence
Length = 616
Score = 361 bits (182), Expect = 8e-098
Identities = 398/470 (84%)
Strand = Plus / Minus
Query: 518 taagccacacaggtgcggggcggagaaaggactttgaacgagttcggccggttgttgaag 577
|||||||||||||| || || ||||| | || |||||| ||||| || ||||||||||||
Sbjct: 479 taagccacacaggtacgaggtggagacaagattttgaatgagttagggcggttgttgaag 420
Query: 578 ttcgtttcgggcacccctggcaccccttcaggcgacgtgaagtgatccacgtcgtggcca 637
|| |||||||| || || || | |||||||| || |||||||||||| ||| ||| |
Sbjct: 419 tttgtttcgggtactcccggtattccttcaggtgatgtgaagtgatccgagtcatgggcc 360
Query: 638 actcttccatgtccaccgaagaccagagcatcagagtccagggctactctgtatttccca 697
||||||||||||||||| || | || |||||| |||||||| ||||| |||| ||||||
Sbjct: 359 actcttccatgtccaccaaacatcaaagcatcggagtccagagctaccttgtacttccca 300
Query: 698 ggcaaatcgcatcccactttgtagccctcgtaagttttcttgggatggaaattgaaaaca 757
||||| || ||||| |||||||| || || || ||||| ||||||||||||||||| ||
Sbjct: 299 ggcaagtcacatccgactttgtaaccatcataggttttattgggatggaaattgaagacg 240
Query: 758 aaaactaaatctccacgttcaaagacaataaccttttcctcatcgttcatgtcgctgacg 817
||||| | ||||||||||||||| ||||||||||| | || || ||||||||||||||
Sbjct: 239 aaaaccagatctccacgttcaaatacaataaccttcttttcctcattcatgtcgctgaca 180
Query: 818 atctgctttgacgacgaaaggaaggaaaatctctcatcgagcgcattcatcgcttggtca 877
||||||||||| || || |||||||||||| | || |||||||||||||| ||||| |||
Sbjct: 179 atctgctttgatgatgataggaaggaaaatttgtcgtcgagcgcattcattgcttgatca 120
Query: 878 aacgcattcatgtacttgtaccgcaagtgatcagtgtccacaaggctccactgtcgtctg 937
|| || |||||||||||||| || | ||||||| |||| || ||||||||||| ||||||
Sbjct: 119 aatgcgttcatgtacttgtatcgtaggtgatcaatgtcgacgaggctccactggcgtctg 60
Query: 938 catttatcatagctccagttgttcccttctcttggaaagtcaatccattc 987
||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 59 catttatcataactccaattgttgccttctcttggaaagtcgatccattc 10
>gb|BG368110.1|BG368110 HVSMEi0015L13f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015L13f, mRNA sequence
Length = 879
Score = 303 bits (153), Expect = 2e-080
Identities = 300/349 (85%)
Strand = Plus / Minus
Query: 638 actcttccatgtccaccgaagaccagagcatcagagtccagggctactctgtatttccca 697
||||||||||||||||| || | || |||||| |||||||| ||||| |||| ||||||
Sbjct: 349 actcttccatgtccaccaaacatcaaagcatcggagtccagagctaccttgtacttccca 290
Query: 698 ggcaaatcgcatcccactttgtagccctcgtaagttttcttgggatggaaattgaaaaca 757
||||| || ||||| |||||||| || || || ||||| ||||||||||||||||| ||
Sbjct: 289 ggcaagtcacatccgactttgtaaccatcataggttttattgggatggaaattgaagacg 230
Query: 758 aaaactaaatctccacgttcaaagacaataaccttttcctcatcgttcatgtcgctgacg 817
||||| | ||||||||||||||| ||||||||||| | || || ||||||||||||||
Sbjct: 229 aaaaccagatctccacgttcaaatacaataaccttcttttcctcattcatgtcgctgaca 170
Query: 818 atctgctttgacgacgaaaggaaggaaaatctctcatcgagcgcattcatcgcttggtca 877
||||||||||| || || |||||||||||| | || |||||||||||||| ||||| |||
Sbjct: 169 atctgctttgatgatgataggaaggaaaatttgtcgtcgagcgcattcattgcttgatca 110
Query: 878 aacgcattcatgtacttgtaccgcaagtgatcagtgtccacaaggctccactgtcgtctg 937
|| || |||||||||||||| || | ||||||| |||| || ||||||||||| ||||||
Sbjct: 109 aatgcgttcatgtacttgtatcgtaggtgatcaatgtcgacgaggctccactggcgtctg 50
Query: 938 catttatcatagctccagttgttcccttctcttggaaagtcaatccatt 986
||||||||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct: 49 catttatcataactccaattgttgccttctcttggaaagtcgatccatt 1
>gb|BQ472575.1|BQ472575 HB09C02T BC Hordeum vulgare subsp. vulgare cDNA clone HB09C02
5-PRIME, mRNA sequence
Length = 563
Score = 254 bits (128), Expect = 1e-065
Identities = 311/372 (83%)
Strand = Plus / Minus
Query: 518 taagccacacaggtgcggggcggagaaaggactttgaacgagttcggccggttgttgaag 577
|||||||||||||| || || ||||| | || |||||| ||||| || ||||||||||||
Sbjct: 382 taagccacacaggtacgaggtggagacaagattttgaatgagttagggcggttgttgaag 323
Query: 578 ttcgtttcgggcacccctggcaccccttcaggcgacgtgaagtgatccacgtcgtggcca 637
|| |||||||| || || || | |||||||| || |||||||||||| ||| ||| |
Sbjct: 322 tttgtttcgggtactcccggtattccttcaggtgatgtgaagtgatccgagtcatgggcc 263
Query: 638 actcttccatgtccaccgaagaccagagcatcagagtccagggctactctgtatttccca 697
||||||||||||||||| || | || |||||| |||||||| ||||| |||| ||||||
Sbjct: 262 actcttccatgtccaccaaacatcaaagcatcggagtccagagctaccttgtacttccca 203
Query: 698 ggcaaatcgcatcccactttgtagccctcgtaagttttcttgggatggaaattgaaaaca 757
||||| || ||||| |||||||| || || || ||||| ||||||||||||||||| ||
Sbjct: 202 ggcaagtcacatccgactttgtaaccatcataggttttattgggatggaaattgaagacg 143
Query: 758 aaaactaaatctccacgttcaaagacaataaccttttcctcatcgttcatgtcgctgacg 817
||||| | ||||||||||||||| ||||||||||| | || || ||||||||||||||
Sbjct: 142 aaaaccagatctccacgttcaaatacaataaccttcttttcctcattcatgtcgctgaca 83
Query: 818 atctgctttgacgacgaaaggaaggaaaatctctcatcgagcgcattcatcgcttggtca 877
||||||||||| || || |||||||||||| | || |||||||||||||| ||||| |||
Sbjct: 82 atctgctttgatgatgataggaaggaaaatttgtcgtcgagcgcattcattgcttgatca 23
Query: 878 aacgcattcatg 889
|| || ||||||
Sbjct: 22 aatgcgttcatg 11
>gb|BU968310.1|BU968310 HB07C02r BC Hordeum vulgare subsp. vulgare cDNA clone HB07C02
5-PRIME, mRNA sequence
Length = 421
Score = 254 bits (128), Expect = 1e-065
Identities = 311/372 (83%)
Strand = Plus / Minus
Query: 518 taagccacacaggtgcggggcggagaaaggactttgaacgagttcggccggttgttgaag 577
|||||||||||||| || || ||||| | || |||||| ||||| || ||||||||||||
Sbjct: 382 taagccacacaggtacgaggtggagacaagattttgaatgagttagggcggttgttgaag 323
Query: 578 ttcgtttcgggcacccctggcaccccttcaggcgacgtgaagtgatccacgtcgtggcca 637
|| |||||||| || || || | |||||||| || |||||||||||| ||| ||| |
Sbjct: 322 tttgtttcgggtactcccggtattccttcaggtgatgtgaagtgatccgagtcatgggcc 263
Query: 638 actcttccatgtccaccgaagaccagagcatcagagtccagggctactctgtatttccca 697
||||||||||||||||| || | || |||||| |||||||| ||||| |||| ||||||
Sbjct: 262 actcttccatgtccaccaaacatcaaagcatcggagtccagagctaccttgtacttccca 203
Query: 698 ggcaaatcgcatcccactttgtagccctcgtaagttttcttgggatggaaattgaaaaca 757
||||| || ||||| |||||||| || || || ||||| ||||||||||||||||| ||
Sbjct: 202 ggcaagtcacatccgactttgtaaccatcataggttttattgggatggaaattgaagacg 143
Query: 758 aaaactaaatctccacgttcaaagacaataaccttttcctcatcgttcatgtcgctgacg 817
||||| | ||||||||||||||| ||||||||||| | || || ||||||||||||||
Sbjct: 142 aaaaccagatctccacgttcaaatacaataaccttcttttcctcattcatgtcgctgaca 83
Query: 818 atctgctttgacgacgaaaggaaggaaaatctctcatcgagcgcattcatcgcttggtca 877
||||||||||| || || |||||||||||| | || |||||||||||||| ||||| |||
Sbjct: 82 atctgctttgatgatgataggaaggaaaatttgtcgtcgagcgcattcattgcttgatca 23
Query: 878 aacgcattcatg 889
|| || ||||||
Sbjct: 22 aatgcgttcatg 11
>gb|BU986318.1|BU986318 HF11G13r HF Hordeum vulgare subsp. vulgare cDNA clone HF11G13
5-PRIME, mRNA sequence
Length = 542
Score = 250 bits (126), Expect = 2e-064
Identities = 303/362 (83%)
Strand = Plus / Minus
Query: 518 taagccacacaggtgcggggcggagaaaggactttgaacgagttcggccggttgttgaag 577
|||||||||||||| || || ||||| | || |||||| ||||| || ||||||||||||
Sbjct: 378 taagccacacaggtacgaggtggagacaagattttgaatgagttagggcggttgttgaag 319
Query: 578 ttcgtttcgggcacccctggcaccccttcaggcgacgtgaagtgatccacgtcgtggcca 637
|| |||||||| || || || | |||||||| || |||||||||||| ||| ||| |
Sbjct: 318 tttgtttcgggtactcccggtattccttcaggtgatgtgaagtgatccgagtcatgggcc 259
Query: 638 actcttccatgtccaccgaagaccagagcatcagagtccagggctactctgtatttccca 697
||||||||||||||||| || | || |||||| |||||||| ||||| |||| ||||||
Sbjct: 258 actcttccatgtccaccaaacatcaaagcatcggagtccagagctaccttgtacttccca 199
Query: 698 ggcaaatcgcatcccactttgtagccctcgtaagttttcttgggatggaaattgaaaaca 757
||||| || ||||| |||||||| || || || ||||| ||||||||||||||||| ||
Sbjct: 198 ggcaagtcacatccgactttgtaaccatcataggttttattgggatggaaattgaagacg 139
Query: 758 aaaactaaatctccacgttcaaagacaataaccttttcctcatcgttcatgtcgctgacg 817
||||| | ||||||||||||||| ||||||||||| | || || ||||||||||||||
Sbjct: 138 aaaaccagatctccacgttcaaatacaataaccttcttttcctcattcatgtcgctgaca 79
Query: 818 atctgctttgacgacgaaaggaaggaaaatctctcatcgagcgcattcatcgcttggtca 877
||||||||||| || || |||||||||||| | || |||||||||||||| ||||| |||
Sbjct: 78 atctgctttgatgatgataggaaggaaaatttgtcgtcgagcgcattcattgcttgatca 19
Query: 878 aa 879
||
Sbjct: 18 aa 17
>gb|BG366114.1|BG366114 HVSMEi0005M22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0005M22f, mRNA sequence
Length = 933
Score = 236 bits (119), Expect = 3e-060
Identities = 284/339 (83%)
Strand = Plus / Minus
Query: 509 acacggtaataagccacacaggtgcggggcggagaaaggactttgaacgagttcggccgg 568
||||| || |||||||||||||| || || ||||| | || |||||| ||||| || |||
Sbjct: 341 acacgatagtaagccacacaggtacgaggtggagacaagattttgaatgagttagggcgg 282
Query: 569 ttgttgaagttcgtttcgggcacccctggcaccccttcaggcgacgtgaagtgatccacg 628
||||||||||| |||||||| || || || | |||||||| ||||||||||||||| |
Sbjct: 281 ttgttgaagtttgtttcgggtactcccggtattccttcaggtgacgtgaagtgatccgag 222
Query: 629 tcgtggccaactcttccatgtccaccgaagaccagagcatcagagtccagggctactctg 688
|| ||| | ||||||||||||||||| || | || |||||| |||||||| ||||| ||
Sbjct: 221 tcatgggccactcttccatgtccaccaaacatcaaagcatcggagtccagagctaccttg 162
Query: 689 tatttcccaggcaaatcgcatcccactttgtagccctcgtaagttttcttgggatggaaa 748
|| ||||||||||| || ||||| |||||||| || || || ||||| ||||||||||||
Sbjct: 161 tacttcccaggcaagtcacatccgactttgtaaccatcataggttttattgggatggaaa 102
Query: 749 ttgaaaacaaaaactaaatctccacgttcaaagacaataaccttttcctcatcgttcatg 808
||||| || ||||| | ||||||||||||||| ||||||||||| | || || ||||||
Sbjct: 101 ttgaagacgaaaaccagatctccacgttcaaatacaataaccttcttttcctcattcatg 42
Query: 809 tcgctgacgatctgctttgacgacgaaaggaaggaaaat 847
|||||||| ||||||||||| || || ||||||||||||
Sbjct: 41 tcgctgacaatctgctttgatgatgataggaaggaaaat 3
>gb|BU975349.1|BU975349 HB30O07r BC Hordeum vulgare subsp. vulgare cDNA clone HB30O07
5-PRIME, mRNA sequence
Length = 471
Score = 202 bits (102), Expect = 5e-050
Identities = 275/332 (82%), Gaps = 3/332 (0%)
Strand = Plus / Minus
Query: 2102 ggatcccaatgaacaccatcatagggagctccaaatttagaggcatcaacagtcgcataa 2161
|||||||| |||||||| || || |||||||||||||||||||||||| || | ||||||
Sbjct: 438 ggatcccagtgaacaccgtcgtatggagctccaaatttagaggcatcagcaattgcataa 379
Query: 2162 cgaatcaatgctggaatacgatcaacccatactcca---ccatgtagaaagcgaaattta 2218
|||||| |||| ||||| |||||||||||||||||| ||| | |||| |||||||||
Sbjct: 378 cgaatccatgcaggaatccgatcaacccatactccatctccacggtgaaatcgaaattta 319
Query: 2219 accttggaattgtgagggatggcaggtttccctttgacatggtcaattttgatcgaccaa 2278
||||||||||| || ||||||||||||||||| ||||||||| ||| |||| ||||||
Sbjct: 318 accttggaattatgggggatggcaggtttcccgttgacatgggaaatcctgattgaccaa 259
Query: 2279 acaccaaatttatccttctccatcttatggtttgcaccattccagtcattgaagtcacca 2338
|||||||| ||||||||| |||| | || | |||||||||| ||||||||||||
Sbjct: 258 acaccaaaattatccttcgtcatcctgtgcccagagccattccagttgttgaagtcacca 199
Query: 2339 ataagctctgcctcctgcgcagcaggtgcccattcacgatatacagttccatcctcattt 2398
|||| || ||| |||| || ||||| |||||||| | || |||||| |||| | | |
Sbjct: 198 ataacctgtgcttcctttgctgcaggggcccattccctgtacacagttgcatcattttct 139
Query: 2399 gtattaatcccaaatttcaaatagcctttaga 2430
|| || |||||||| |||||||||||||||||
Sbjct: 138 gtgttgatcccaaacttcaaatagcctttaga 107
>gb|BU985282.1|BU985282 HF06K19r HF Hordeum vulgare subsp. vulgare cDNA clone HF06K19
5-PRIME, mRNA sequence
Length = 201
Score = 129 bits (65), Expect = 5e-028
Identities = 164/197 (83%)
Strand = Plus / Minus
Query: 557 gagttcggccggttgttgaagttcgtttcgggcacccctggcaccccttcaggcgacgtg 616
||||| || |||||||||||||| |||||||| || || || | |||||||| || |||
Sbjct: 201 gagttagggcggttgttgaagtttgtttcgggtactcccggtattccttcaggtgatgtg 142
Query: 617 aagtgatccacgtcgtggccaactcttccatgtccaccgaagaccagagcatcagagtcc 676
||||||||| ||| ||| | ||||||||||||||||| || | || |||||| ||||||
Sbjct: 141 aagtgatccgagtcatgggccactcttccatgtccaccaaacatcaaagcatcggagtcc 82
Query: 677 agggctactctgtatttcccaggcaaatcgcatcccactttgtagccctcgtaagttttc 736
|| ||||| |||| ||||||||||| || ||||| |||||||| || || || |||||
Sbjct: 81 agagctaccttgtacttcccaggcaagtcacatccgactttgtaaccatcataggtttta 22
Query: 737 ttgggatggaaattgaa 753
|||||||||||||||||
Sbjct: 21 ttgggatggaaattgaa 5
>gb|AW982901.3|AW982901 HVSMEg0004I06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004I06f, mRNA sequence
Length = 564
Score = 121 bits (61), Expect = 1e-025
Identities = 172/209 (82%)
Strand = Plus / Minus
Query: 509 acacggtaataagccacacaggtgcggggcggagaaaggactttgaacgagttcggccgg 568
||||| || |||||||||||||| || || ||||| | || |||||| ||||| || |||
Sbjct: 209 acacgatagtaagccacacaggtacgaggtggagacaagattttgaatgagttagggcgg 150
Query: 569 ttgttgaagttcgtttcgggcacccctggcaccccttcaggcgacgtgaagtgatccacg 628
|||||||||| |||||||| || || || | |||||||| ||||||||||||||| |
Sbjct: 149 ttgttgaagtatgtttcgggtactcccggtattccttcaggtgacgtgaagtgatccgag 90
Query: 629 tcgtggccaactcttccatgtccaccgaagaccagagcatcagagtccagggctactctg 688
|| ||| | ||||||||||||||||| || | || |||||| |||||||| ||||| ||
Sbjct: 89 tcatgggccactcttccatgtccaccaaacatcaaagcatcggagtccagagctaccttg 30
Query: 689 tatttcccaggcaaatcgcatcccacttt 717
|| ||||||||||| || ||||| |||||
Sbjct: 29 tacttcccaggcaagtcacatccgacttt 1
>gb|BU969620.1|BU969620 HB12B01r BC Hordeum vulgare subsp. vulgare cDNA clone HB12B01
5-PRIME, mRNA sequence
Length = 539
Score = 101 bits (51), Expect = 1e-019
Identities = 138/167 (82%)
Strand = Plus / Minus
Query: 518 taagccacacaggtgcggggcggagaaaggactttgaacgagttcggccggttgttgaag 577
|||||||||||||| || || ||||| | || |||||| ||||| || ||||||||||||
Sbjct: 184 taagccacacaggtacgaggtggagacaagattttgaatgagttagggcggttgttgaag 125
Query: 578 ttcgtttcgggcacccctggcaccccttcaggcgacgtgaagtgatccacgtcgtggcca 637
|| |||||||| || || || | |||||||| || |||||||||||| ||| ||| |
Sbjct: 124 tttgtttcgggtactcccggtattccttcaggtgatgtgaagtgatccgagtcatgggcc 65
Query: 638 actcttccatgtccaccgaagaccagagcatcagagtccagggctac 684
||||||||||||||||| || | || |||||| |||||||| |||||
Sbjct: 64 actcttccatgtccaccaaacatcaaagcatcggagtccagagctac 18
>gb|BQ755653.1|BQ755653 EBed07_SQ003_P03_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ003_P03 5', mRNA sequence
Length = 633
Score = 71.9 bits (36), Expect = 1e-010
Identities = 90/108 (83%)
Strand = Plus / Minus
Query: 518 taagccacacaggtgcggggcggagaaaggactttgaacgagttcggccggttgttgaag 577
|||||||||||||| || || ||||| | || |||||| ||||| || ||||||||||||
Sbjct: 111 taagccacacaggtacgaggtggagacaagattttgaatgagttagggcggttgttgaag 52
Query: 578 ttcgtttcgggcacccctggcaccccttcaggcgacgtgaagtgatcc 625
|| |||||||| || || || | |||||||| || ||||||||||||
Sbjct: 51 tttgtttcgggtactcccggtattccttcaggtgatgtgaagtgatcc 4
>gb|AF064561.1|AF064561 Hordeum vulgare cultivar Bomi starch branching enzyme IIb (sbeIIb)
mRNA, nuclear gene encoding plastid protein, complete cds
Length = 2780
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaa 1014
||||||||||||| |||||||| || || || |||||||||||||||||
Sbjct: 2023 ctcttggaaagtctatccattcaggatgcccgaactcatttcccataaa 1975
Score = 40.1 bits (20), Expect = 0.39
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1324 gcgatagtcaaacccaaccccacc 1347
|||||||||||| |||||||||||
Sbjct: 1668 gcgatagtcaaaaccaaccccacc 1645
>gb|AV914376.1|AV914376 AV914376 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5o11 5', mRNA sequence
Length = 471
Score = 56.0 bits (28), Expect = 7e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
|||||||||| || |||||||| || || ||||||||||||||||| |||||
Sbjct: 270 ctcttggaaaatctatccattcaggatgcccaaactcatttcccatgaaatt 219
>gb|BU968738.1|BU968738 HB08H01r BC Hordeum vulgare subsp. vulgare cDNA clone HB08H01
5-PRIME, mRNA sequence
Length = 428
Score = 56.0 bits (28), Expect = 7e-006
Identities = 89/108 (82%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 518 taagccacacaggtgcggggcggagaaaggactttgaacgagttcggccggttgttgaag 577
|||||||||||||| || || ||||| | || |||||| ||||| || |||||||| |||
Sbjct: 148 taagccacacaggtacgaggtggagacaagattttgaatgagttagggcggttgtt-aag 90
Query: 578 ttcgtttcgggcacccctggcaccccttcaggcgacgtgaagtgatcc 625
|| |||||||| || || || | |||||||| || ||||||||||||
Sbjct: 89 tttgtttcgggtactcccggtattccttcaggtgatgtgaagtgatcc 42
>gb|CA022075.1|CA022075 HZ42B15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42B15
5-PRIME, mRNA sequence
Length = 672
Score = 56.0 bits (28), Expect = 7e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
|||||||||| || |||||||| || || ||||||||||||||||| |||||
Sbjct: 502 ctcttggaaaatctatccattcaggatgcccaaactcatttcccatgaaatt 451
>gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch branching enzyme IIa (sbeIIa)
mRNA, nuclear gene encoding plastid protein, complete cds
Length = 2554
Score = 56.0 bits (28), Expect = 7e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
|||||||||| || |||||||| || || ||||||||||||||||| |||||
Sbjct: 1738 ctcttggaaaatctatccattcaggatgcccaaactcatttcccatgaaatt 1687
>gb|BE196055.1|BE196055 HVSMEh0091D22f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0091D22f, mRNA sequence
Length = 832
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
|||||||| || |||||||| || || ||||||||||||||||| |||||
Sbjct: 147 cttggaaaatctatccattcaggatgcccaaactcatttcccatgaaatt 98
>gb|BE195628.2|BE195628 HVSMEh0089P20f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0089P20f, mRNA sequence
Length = 801
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
|||||||| || |||||||| || || ||||||||||||||||| |||||
Sbjct: 459 cttggaaaatctatccattcaggatgcccaaactcatttcccatgaaatt 410
>gb|BE196057.2|BE196057 HVSMEh0091D24f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0091D24f, mRNA sequence
Length = 918
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
|||||||| || |||||||| || || ||||||||||||||||| |||||
Sbjct: 143 cttggaaaatctatccattcaggatgcccaaactcatttcccatgaaatt 94
>gb|BF065047.1|BF065047 HV_CEb0022L05f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022L05f, mRNA sequence
Length = 825
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
|||||||| || |||||||| || || ||||||||||||||||| |||||
Sbjct: 227 cttggaaaatctatccattcaggatgcccaaactcatttcccatgaaatt 178
>gb|CV060003.1|CV060003 BNEL53d1 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL53d1 5' similar to probable
1,4-alpha-glucan branching enzyme, mRNA sequence
Length = 587
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttccca 1010
|||||||| || |||||||| || || ||||||||||||||||
Sbjct: 43 cttggaaaatctatccattcaggatgcccaaactcatttccca 1
>gb|CV060106.1|CV060106 BNEL54e11 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL54e11 5' similar to probable
1,4-alpha-glucan branching enzyme, mRNA sequence
Length = 612
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttccca 1010
|||||||| || |||||||| || || ||||||||||||||||
Sbjct: 43 cttggaaaatctatccattcaggatgcccaaactcatttccca 1
>gb|BE602527.2|BE602527 HVSMEh0099J22f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0099J22f, mRNA sequence
Length = 731
Score = 42.1 bits (21), Expect = 0.098
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 967 tcttggaaagtcaatccattctgggtgaccaaactcatttcccataaa 1014
||||||| |||| |||||||| || || | |||||||||||||||||
Sbjct: 731 tcttgganagtctatccattcaggatgccggaactcatttcccataaa 684
Score = 40.1 bits (20), Expect = 0.39
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1324 gcgatagtcaaacccaaccccacc 1347
|||||||||||| |||||||||||
Sbjct: 377 gcgatagtcaaaaccaaccccacc 354
>gb|CA030569.1|CA030569 HX07H03r HX Hordeum vulgare subsp. vulgare cDNA clone HX07H03
5-PRIME, mRNA sequence
Length = 647
Score = 42.1 bits (21), Expect = 0.098
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 970 tggaaagtcaatccattctgggtgaccaaactcatttccca 1010
|||||| || |||||||| || || ||||||||||||||||
Sbjct: 42 tggaaaatctatccattcaggatgcccaaactcatttccca 2
>gb|BF065328.2|BF065328 HV_CEb0012C05f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012C05f, mRNA sequence
Length = 565
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1254 ccatcgaccactcagagtca 1273
||||||||||||||||||||
Sbjct: 249 ccatcgaccactcagagtca 268
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 275,292
Number of Sequences: 312970
Number of extensions: 275292
Number of successful extensions: 83345
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83238
Number of HSP's gapped (non-prelim): 97
length of query: 2812
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2792
effective length of database: 168,875,139
effective search space: 471499388088
effective search space used: 471499388088
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)