BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485939.2.1
(530 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA002506.1|CA002506 HS07L12r HS Hordeum vulgare subsp. v... 539 e-152
gb|CB882601.1|CB882601 HL02F10w HL Hordeum vulgare subsp. v... 539 e-152
gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm libra... 531 e-150
gb|BQ471469.1|BQ471469 HV02I08r HV Hordeum vulgare subsp. v... 517 e-145
gb|CA003603.1|CA003603 HS14P22r HS Hordeum vulgare subsp. v... 416 e-115
gb|CV063055.1|CV063055 BNEL86b3 Barley EST endosperm librar... 389 e-107
gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm libra... 343 4e-093
gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm librar... 343 4e-093
gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm librar... 343 4e-093
gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm libra... 343 4e-093
gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm librar... 343 4e-093
gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm libra... 337 2e-091
gb|CV062831.1|CV062831 BNEL83e5 Barley EST endosperm librar... 335 9e-091
gb|BG416961.1|BG416961 HVSMEk0015G09f Hordeum vulgare testa... 176 5e-043
gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedl... 84 5e-015
gb|BI957410.1|BI957410 HVSMEn0009G13f Hordeum vulgare rachi... 84 5e-015
gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedl... 84 5e-015
gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedl... 84 5e-015
gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, sal... 84 5e-015
gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, sal... 84 5e-015
gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, sal... 84 5e-015
gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, wat... 84 5e-015
gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. v... 84 5e-015
emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcriptio... 84 5e-015
gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-a... 82 2e-014
gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike... 76 1e-012
gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. v... 76 1e-012
gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedl... 70 8e-011
gb|BF619532.3|BF619532 HVSMEc0003P10f Hordeum vulgare seedl... 70 8e-011
gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. v... 70 8e-011
gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedl... 64 5e-009
gb|BI958189.1|BI958189 HVSMEn0013M24f Hordeum vulgare rachi... 64 5e-009
gb|BF620286.3|BF620286 HVSMEc0019F08f Hordeum vulgare seedl... 64 5e-009
gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. v... 64 5e-009
gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedl... 62 2e-008
gb|BQ764651.1|BQ764651 EBca01_SQ004_C14_R carpel, pre-anthe... 62 2e-008
gb|CK123590.1|CK123590 BES1824104i24 BES1824 Hordeum vulgar... 60 8e-008
gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgar... 60 8e-008
gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedl... 58 3e-007
gb|BQ753632.1|BQ753632 EBan01_SQ004_M23_R anther, yellow st... 58 3e-007
emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA 58 3e-007
gb|BF262578.2|BF262578 HV_CEa0004G02f Hordeum vulgare seedl... 56 1e-006
gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachi... 56 1e-006
gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, sal... 56 1e-006
gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. v... 56 1e-006
emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA 56 1e-006
emb|X70881.1|HVMYB3G H.vulgare myb3 gene 56 1e-006
gb|BF629773.1|BF629773 HVSMEb0013M11f Hordeum vulgare seedl... 52 2e-005
gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. v... 52 2e-005
gb|CB876695.1|CB876695 HP02B11T HP Hordeum vulgare subsp. v... 52 2e-005
gb|CV053597.1|CV053597 BNEL101a5 Barley EST endosperm libra... 52 2e-005
gb|AL507585.1|AL507585 AL507585 Hordeum vulgare Barke devel... 50 7e-005
gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedl... 50 7e-005
gb|BF064941.1|BF064941 HV_CEb0022A15f Hordeum vulgare seedl... 50 7e-005
gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachi... 50 7e-005
gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedl... 50 7e-005
gb|AV932650.1|AV932650 AV932650 K. Sato unpublished cDNA li... 50 7e-005
gb|AV933832.1|AV933832 AV933832 K. Sato unpublished cDNA li... 50 7e-005
gb|BQ765682.1|BQ765682 EBro03_SQ007_I24_R root, 3 week, wat... 50 7e-005
gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. v... 50 7e-005
gb|CA027463.1|CA027463 HZ59A03r HZ Hordeum vulgare subsp. v... 50 7e-005
gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcrip... 50 7e-005
emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA 50 7e-005
emb|X70879.1|HVMYB1G H.vulgare Myb1 gene 50 7e-005
gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedl... 48 3e-004
gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedl... 48 3e-004
gb|BF618630.2|BF618630 HVSMEc0006O07f Hordeum vulgare seedl... 48 3e-004
gb|BI954784.1|BI954784 HVSMEm0019M04f Hordeum vulgare green... 48 3e-004
gb|BM443593.2|BM443593 EBro02_SQ005_M21_R root, 3 week, hyd... 48 3e-004
gb|BF626054.2|BF626054 HVSMEa0015H17f Hordeum vulgare seedl... 46 0.001
gb|BF254573.2|BF254573 HVSMEf0004G11f Hordeum vulgare seedl... 46 0.001
gb|BG369102.2|BG369102 HVSMEi0021L15f Hordeum vulgare 20 DA... 46 0.001
gb|BQ460434.1|BQ460434 HA09K10r HA Hordeum vulgare subsp. v... 46 0.001
gb|BM371860.2|BM371860 EBma08_SQ004_D12_R maternal, 28 DPA,... 46 0.001
gb|BI779364.2|BI779364 EBro01_SQ003_M18_R root, 3 week, hyd... 46 0.001
gb|BU975173.1|BU975173 HB30F02r BC Hordeum vulgare subsp. v... 46 0.001
gb|BU975705.1|BU975705 HB32A20r BC Hordeum vulgare subsp. v... 46 0.001
gb|AL507948.1|AL507948 AL507948 Hordeum vulgare Barke devel... 44 0.005
gb|BG369720.1|BG369720 HVSMEi0025K10f Hordeum vulgare 20 DA... 44 0.005
gb|BQ466900.1|BQ466900 HS01O24T HS Hordeum vulgare subsp. v... 44 0.005
gb|CB877704.1|CB877704 HP05O05T HP Hordeum vulgare subsp. v... 44 0.005
gb|BI956816.1|BI956816 HVSMEn0005H11f Hordeum vulgare rachi... 42 0.018
gb|AV920069.1|AV920069 AV920069 K. Sato unpublished cDNA li... 42 0.018
gb|BF259477.2|BF259477 HVSMEf0019D12f Hordeum vulgare seedl... 40 0.071
gb|AV914947.1|AV914947 AV914947 K. Sato unpublished cDNA li... 40 0.071
gb|BM816803.1|BM816803 HC114B11_SK.ab1 HC Hordeum vulgare s... 40 0.071
gb|BM443626.2|BM443626 EBro02_SQ005_P07_R root, 3 week, hyd... 40 0.071
gb|BU984349.1|BU984349 HF03K24r HF Hordeum vulgare subsp. v... 40 0.071
gb|BJ466921.1|BJ466921 BJ466921 K. Sato unpublished cDNA li... 38 0.28
gb|BQ458636.1|BQ458636 HA04K15r HA Hordeum vulgare subsp. v... 38 0.28
gb|BQ462727.1|BQ462727 HI01N06T HI Hordeum vulgare subsp. v... 38 0.28
gb|BU977872.1|BU977872 HA12D03r HA Hordeum vulgare subsp. v... 38 0.28
gb|BU998656.1|BU998656 HI11M06r HI Hordeum vulgare subsp. v... 38 0.28
gb|CA021341.1|CA021341 HZ39N01r HZ Hordeum vulgare subsp. v... 38 0.28
>gb|CA002506.1|CA002506 HS07L12r HS Hordeum vulgare subsp. vulgare cDNA clone HS07L12
5-PRIME, mRNA sequence
Length = 514
Score = 539 bits (272), Expect = e-152
Identities = 338/360 (93%)
Strand = Plus / Plus
Query: 96 gcaatggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcg 155
||||||||||| ||||||||||| ||||||| ||| | |||||| ||||| |||||||||
Sbjct: 124 gcaatggggtgtaaggcgtgcgagaagcccaggccgagctaccggaaggggctgtggtcg 183
Query: 156 ccggaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagc 215
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 184 ccggaggaggaccagaagctccgcgattacattctccggcacggccacggctgctggagc 243
Query: 216 gcgctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatc 275
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcgcttcccgctaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatc 303
Query: 276 aactaccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtg 335
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 304 aactacctgcggccggggctgaagcacggcatgttctcggcggaggaggaggagacggtg 363
Query: 336 atgagcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggc 395
||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 364 atgagcctccacgccgccctcggcaacaagtggtcgaggatcgcacggcatttgccgggg 423
Query: 396 aggaccgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgagggc 455
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 424 aggaccgacaacgaggtcaagaactactggaactcctacctcaagaagagggtcgagggc 483
>gb|CB882601.1|CB882601 HL02F10w HL Hordeum vulgare subsp. vulgare cDNA clone HL02F10
3-PRIME, mRNA sequence
Length = 610
Score = 539 bits (272), Expect = e-152
Identities = 338/360 (93%)
Strand = Plus / Plus
Query: 96 gcaatggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcg 155
||||||||||| ||||||||||| ||||||| ||| | |||||| ||||| |||||||||
Sbjct: 109 gcaatggggtgtaaggcgtgcgagaagcccaggccgagctaccggaaggggctgtggtcg 168
Query: 156 ccggaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagc 215
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 169 ccggaggaggaccagaagctccgcgattacattctccggcacggccacggctgctggagc 228
Query: 216 gcgctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatc 275
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gcgcttcccgctaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatc 288
Query: 276 aactaccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtg 335
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 289 aactacctgcggccggggctgaagcacggcatgttctcggcggaggaggaggagacggtg 348
Query: 336 atgagcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggc 395
||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 349 atgagcctccacgccgccctcggcaacaagtggtcgaggatcgcacggcatttgccgggg 408
Query: 396 aggaccgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgagggc 455
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 409 aggaccgacaacgaggtcaagaactactggaactcctacctcaagaagagggtcgagggc 468
>gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42e10 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 717
Score = 531 bits (268), Expect = e-150
Identities = 337/360 (93%)
Strand = Plus / Plus
Query: 96 gcaatggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcg 155
||||||||||| ||||||||||| ||||||| ||| | |||||| ||||| |||||||||
Sbjct: 97 gcaatggggtgtaaggcgtgcgagaagcccaggccgagctaccggaaggggctgtggtcg 156
Query: 156 ccggaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagc 215
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 157 ccggaggaggaccagaagctccgcgattacattctccggcacggccacggctgctggagc 216
Query: 216 gcgctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatc 275
||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 217 gcgcttcccgctaaagccgggctccagcggaacggcaagagctgcaagctgcggtggatc 276
Query: 276 aactaccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtg 335
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 277 aactacctgcggccggggctgaagcacggcatgttctctccggaggaggaggagacggtg 336
Query: 336 atgagcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggc 395
||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 337 atgagcctccacgccgtcctcggcaacaagtggtcgaggatcgcacggcatttgccgggg 396
Query: 396 aggaccgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgagggc 455
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 397 aggaccgacaacgaggtcaagaactactggaactcctacctcaagaagagggtcgagggc 456
>gb|BQ471469.1|BQ471469 HV02I08r HV Hordeum vulgare subsp. vulgare cDNA clone HV02I08
5-PRIME, mRNA sequence
Length = 593
Score = 517 bits (261), Expect = e-145
Identities = 337/361 (93%), Gaps = 1/361 (0%)
Strand = Plus / Plus
Query: 96 gcaatggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcg 155
||||||||||| ||||||||||| ||||||| ||| | |||||| ||||| |||||||||
Sbjct: 119 gcaatggggtgtaaggcgtgcgagaagcccaggccgagctaccggaaggggctgtggtcg 178
Query: 156 ccggaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagc 215
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 179 ccggaggaggaccagaagctccgcgattacattctccggcacggccacggctgctggagc 238
Query: 216 gcgctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatc 275
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gcgcttcccgctaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatc 298
Query: 276 aactaccttcggccggggctgaagcacggcatgttctcc-ccggaggaggaggagacggt 334
|||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 299 aactacctgcggccggggctgaagcacggcatgtcttccggcggaggaggaggagacggt 358
Query: 335 gatgagcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctgg 394
|||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 359 gatgagcctccacgccgccctcggcaacaagtggtcgaggatcgcacggcatttgccggg 418
Query: 395 caggaccgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgaggg 454
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 419 gaggaccgacaacgaggtcaagaactactggaactcctacctcaagaagagggtcgaggg 478
Query: 455 c 455
|
Sbjct: 479 c 479
>gb|CA003603.1|CA003603 HS14P22r HS Hordeum vulgare subsp. vulgare cDNA clone HS14P22
5-PRIME, mRNA sequence
Length = 405
Score = 416 bits (210), Expect = e-115
Identities = 264/282 (93%)
Strand = Plus / Plus
Query: 96 gcaatggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcg 155
||||||||||| ||||||||||| ||||||| ||| | |||||| ||||| |||||||||
Sbjct: 124 gcaatggggtgtaaggcgtgcgagaagcccaggccgagctaccggaaggggctgtggtcg 183
Query: 156 ccggaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagc 215
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 184 ccggaggaggaccagaagctccgcgattacattctccggcacggccacggctgctggagc 243
Query: 216 gcgctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatc 275
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcgcttcccgctaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatc 303
Query: 276 aactaccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtg 335
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 304 aactacctgcggccggggctgaagcacggcatgttctcggcggaggaggaggagacggtg 363
Query: 336 atgagcctccacgccacgctcggcaacaagtggtccaggatc 377
||||||||||||||| | ||||||||||||||||| ||||||
Sbjct: 364 atgagcctccacgccgccctcggcaacaagtggtcgaggatc 405
>gb|CV063055.1|CV063055 BNEL86b3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL86b3 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 715
Score = 389 bits (196), Expect = e-107
Identities = 319/360 (88%)
Strand = Plus / Plus
Query: 96 gcaatggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcg 155
||||||||||| |||| |||||| ||||||||||| | |||||| ||||| |||||||||
Sbjct: 97 gcaatggggtgtaaggagtgcgagaagcccaagccgagctaccggaaggggctgtggtcg 156
Query: 156 ccggaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagc 215
|||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 157 ccggtggaggaccaaaagctccgcgattacattctccggcacggccacggctgctggagc 216
Query: 216 gcgctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatc 275
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gcgcttaccgctaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatc 276
Query: 276 aactaccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtg 335
|||||||| ||| |||||||||||||||| |||||||| || |||||||||||||||| |
Sbjct: 277 aactacctgcgggcggggctgaagcacggaatgttctcacctgaggaggaggagacggag 336
Query: 336 atgagcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggc 395
|||||||| |||||| | || || ||||||||||| |||||| |||| | ||||
Sbjct: 337 atgagcctacacgccgccctaggaaacaagtggtcgtggatcgaacggaatatgccgttg 396
Query: 396 aggaccgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgagggc 455
|||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct: 397 aggaccgacaacgatgtcaagaactactggaactgctacctctagaagagggtccagggc 456
>gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL17E10 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 479
Score = 343 bits (173), Expect = 4e-093
Identities = 311/357 (87%)
Strand = Plus / Plus
Query: 99 atggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcgccg 158
|||||||||||| ||||| | ||||||||| | | |||||||||| ||||||||||||
Sbjct: 55 atggggtgcaagtcgtgccagaagcccaaggcgcagcaccgcaaggggctgtggtcgccg 114
Query: 159 gaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagcgcg 218
||||||||||||||||||||||| | ||| ||| |||||||||| ||||||||||| |
Sbjct: 115 gaggaggaccagaagctccgcgatttcatcgtccgccacggccacagctgctggagcacc 174
Query: 219 ctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatcaac 278
|||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 175 gtccccgtcaaggccgggcttcagcggaacggcaagagctgcaggctgcgatggatcaac 234
Query: 279 taccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtgatg 338
||||| |||||||||||||||||||||||||||||| |||||| || ||||| || |||
Sbjct: 235 tacctgaggccggggctgaagcacggcatgttctcccgggaggaagaagagaccgtcatg 294
Query: 339 agcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggcagg 398
||||||||||| | ||||||||||||||||| ||| || | |||| |||| ||| ||
Sbjct: 295 ggcctccacgccgccctcggcaacaagtggtctcagatagcgcagcacctgccgggccgg 354
Query: 399 accgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgagggc 455
|| ||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 355 acggacaacgaggtgaagaactactggaactcgtacctcaagaagcgcgtcgagggc 411
>gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL20h7 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 514
Score = 343 bits (173), Expect = 4e-093
Identities = 311/357 (87%)
Strand = Plus / Plus
Query: 99 atggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcgccg 158
|||||||||||| ||||| | ||||||||| | | |||||||||| ||||||||||||
Sbjct: 135 atggggtgcaagtcgtgccagaagcccaaggcgcagcaccgcaaggggctgtggtcgccg 194
Query: 159 gaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagcgcg 218
||||||||||||||||||||||| | ||| ||| |||||||||| ||||||||||| |
Sbjct: 195 gaggaggaccagaagctccgcgatttcatcgtccgccacggccacagctgctggagcacc 254
Query: 219 ctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatcaac 278
|||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 gtccccgtcaaggccgggcttcagcggaacggcaagagctgcaggctgcgatggatcaac 314
Query: 279 taccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtgatg 338
||||| |||||||||||||||||||||||||||||| |||||| || ||||| || |||
Sbjct: 315 tacctgaggccggggctgaagcacggcatgttctcccgggaggaagaagagaccgtcatg 374
Query: 339 agcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggcagg 398
||||||||||| | ||||||||||||||||| ||| || | |||| |||| ||| ||
Sbjct: 375 ggcctccacgccgccctcggcaacaagtggtctcagatagcgcagcacctgccgggccgg 434
Query: 399 accgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgagggc 455
|| ||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 435 acggacaacgaggtgaagaactactggaactcgtacctcaagaagcgcgtcgagggc 491
>gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42d1 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 478
Score = 343 bits (173), Expect = 4e-093
Identities = 311/357 (87%)
Strand = Plus / Plus
Query: 99 atggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcgccg 158
|||||||||||| ||||| | ||||||||| | | |||||||||| ||||||||||||
Sbjct: 55 atggggtgcaagtcgtgccagaagcccaaggcgcagcaccgcaaggggctgtggtcgccg 114
Query: 159 gaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagcgcg 218
||||||||||||||||||||||| | ||| ||| |||||||||| ||||||||||| |
Sbjct: 115 gaggaggaccagaagctccgcgatttcatcgtccgccacggccacagctgctggagcacc 174
Query: 219 ctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatcaac 278
|||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 175 gtccccgtcaaggccgggcttcagcggaacggcaagagctgcaggctgcgatggatcaac 234
Query: 279 taccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtgatg 338
||||| |||||||||||||||||||||||||||||| |||||| || ||||| || |||
Sbjct: 235 tacctgaggccggggctgaagcacggcatgttctcccgggaggaagaagagaccgtcatg 294
Query: 339 agcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggcagg 398
||||||||||| | ||||||||||||||||| ||| || | |||| |||| ||| ||
Sbjct: 295 ggcctccacgccgccctcggcaacaagtggtctcagatagcgcagcacctgccgggccgg 354
Query: 399 accgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgagggc 455
|| ||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 355 acggacaacgaggtgaagaactactggaactcgtacctcaagaagcgcgtcgagggc 411
>gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL79d11 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 558
Score = 343 bits (173), Expect = 4e-093
Identities = 311/357 (87%)
Strand = Plus / Plus
Query: 99 atggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcgccg 158
|||||||||||| ||||| | ||||||||| | | |||||||||| ||||||||||||
Sbjct: 135 atggggtgcaagtcgtgccagaagcccaaggcgcagcaccgcaaggggctgtggtcgccg 194
Query: 159 gaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagcgcg 218
||||||||||||||||||||||| | ||| ||| |||||||||| ||||||||||| |
Sbjct: 195 gaggaggaccagaagctccgcgatttcatcgtccgccacggccacagctgctggagcacc 254
Query: 219 ctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatcaac 278
|||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 gtccccgtcaaggccgggcttcagcggaacggcaagagctgcaggctgcgatggatcaac 314
Query: 279 taccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtgatg 338
||||| |||||||||||||||||||||||||||||| |||||| || ||||| || |||
Sbjct: 315 tacctgaggccggggctgaagcacggcatgttctcccgggaggaagaagagaccgtcatg 374
Query: 339 agcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggcagg 398
||||||||||| | ||||||||||||||||| ||| || | |||| |||| ||| ||
Sbjct: 375 ggcctccacgccgccctcggcaacaagtggtctcagatagcgcagcacctgccgggccgg 434
Query: 399 accgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgagggc 455
|| ||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 435 acggacaacgaggtgaagaactactggaactcgtacctcaagaagcgcgtcgagggc 491
>gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL92e6 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 478
Score = 343 bits (173), Expect = 4e-093
Identities = 311/357 (87%)
Strand = Plus / Plus
Query: 99 atggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcgccg 158
|||||||||||| ||||| | ||||||||| | | |||||||||| ||||||||||||
Sbjct: 55 atggggtgcaagtcgtgccagaagcccaaggcgcagcaccgcaaggggctgtggtcgccg 114
Query: 159 gaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagcgcg 218
||||||||||||||||||||||| | ||| ||| |||||||||| ||||||||||| |
Sbjct: 115 gaggaggaccagaagctccgcgatttcatcgtccgccacggccacagctgctggagcacc 174
Query: 219 ctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatcaac 278
|||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 175 gtccccgtcaaggccgggcttcagcggaacggcaagagctgcaggctgcgatggatcaac 234
Query: 279 taccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtgatg 338
||||| |||||||||||||||||||||||||||||| |||||| || ||||| || |||
Sbjct: 235 tacctgaggccggggctgaagcacggcatgttctcccgggaggaagaagagaccgtcatg 294
Query: 339 agcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggcagg 398
||||||||||| | ||||||||||||||||| ||| || | |||| |||| ||| ||
Sbjct: 295 ggcctccacgccgccctcggcaacaagtggtctcagatagcgcagcacctgccgggccgg 354
Query: 399 accgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgagggc 455
|| ||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 355 acggacaacgaggtgaagaactactggaactcgtacctcaagaagcgcgtcgagggc 411
>gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL40g12 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 488
Score = 337 bits (170), Expect = 2e-091
Identities = 308/354 (87%)
Strand = Plus / Plus
Query: 99 atggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcgccg 158
|||||||||||| ||||| | ||||||||| | | |||||||||| ||||||||||||
Sbjct: 135 atggggtgcaagtcgtgccagaagcccaaggcgcagcaccgcaaggggctgtggtcgccg 194
Query: 159 gaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagcgcg 218
||||||||||||||||||||||| | ||| ||| |||||||||| ||||||||||| |
Sbjct: 195 gaggaggaccagaagctccgcgatttcatcgtccgccacggccacagctgctggagcacc 254
Query: 219 ctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatcaac 278
|||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 gtccccgtcaaggccgggcttcagcggaacggcaagagctgcaggctgcgatggatcaac 314
Query: 279 taccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtgatg 338
||||| |||||||||||||||||||||||||||||| |||||| || ||||| || |||
Sbjct: 315 tacctgaggccggggctgaagcacggcatgttctcccgggaggaagaagagaccgtcatg 374
Query: 339 agcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggcagg 398
||||||||||| | ||||||||||||||||| ||| || | |||| |||| ||| ||
Sbjct: 375 ggcctccacgccgccctcggcaacaagtggtctcagatagcgcagcacctgccgggccgg 434
Query: 399 accgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgag 452
|| ||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct: 435 acggacaacgaggtgaagaactactggaactcgtacctcaagaagcgcgtcgag 488
>gb|CV062831.1|CV062831 BNEL83e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL83e5 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 588
Score = 335 bits (169), Expect = 9e-091
Identities = 310/357 (86%)
Strand = Plus / Plus
Query: 99 atggggtgcaaggcgtgcgacaagcccaagcccaactaccgcaagggcctgtggtcgccg 158
|||||||||||| ||||| | ||||||||| | | |||||||||| ||||||||||||
Sbjct: 161 atggggtgcaagtcgtgccagaagcccaaggcgcagcaccgcaaggggctgtggtcgccg 220
Query: 159 gaggaggaccagaagctccgcgactacattctcctccacggccacggctgctggagcgcg 218
||||||||||||||||||||||| | ||| ||| |||||||||| ||||||||||| |
Sbjct: 221 gaggaggaccagaagctccgcgatttcatcgtccgccacggccacagctgctggagcacc 280
Query: 219 ctccccgcgaaagccgggctccagcggaacggcaagagctgcaggctgcggtggatcaac 278
|||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 281 gtccccgtcaaggccgggcttcagcggaacggcaagagctgcaggctgcgatggatcaac 340
Query: 279 taccttcggccggggctgaagcacggcatgttctccccggaggaggaggagacggtgatg 338
||||| |||||||||||||||||||||||||||||| |||||| || ||||| || |||
Sbjct: 341 tacctgaggccggggctgaagcacggcatgttctcccgggaggaagaagagaccgtcatg 400
Query: 339 agcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggcagg 398
||||||||||| | ||||||||||||||||| ||| || | |||| |||| ||| ||
Sbjct: 401 ggcctccacgccgccctcggcaacaagtggtctcagatagcgcagcacctgccgggccgg 460
Query: 399 accgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgagggc 455
|| ||||||||||| |||||||||||||||||||||||||||| | | |||||||||
Sbjct: 461 acggacaacgaggtgaagaactactggaactcgtacctcaagatgcgcgtcgagggc 517
>gb|BG416961.1|BG416961 HVSMEk0015G09f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0015G09f, mRNA sequence
Length = 489
Score = 176 bits (89), Expect = 5e-043
Identities = 113/121 (93%)
Strand = Plus / Plus
Query: 335 gatgagcctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctgg 394
||||||||| |||||| | ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 1 gatgagccttcacgccgccctcggcaacaagtggtcgaggatcgcacggcatttgccggg 60
Query: 395 caggaccgacaacgaggtcaagaactactggaactcgtacctcaagaagagggtcgaggg 454
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 gaggaccgacaacgaggtcaagaactactggaactcctacctcaagaagagggtcgaggg 120
Query: 455 c 455
|
Sbjct: 121 c 121
>gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018B03f, mRNA sequence
Length = 609
Score = 83.8 bits (42), Expect = 5e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 194 ccacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaa 253
||||||||||||| |||| ||||||| ||| | |||||||||| | |||| ||||||
Sbjct: 222 ccacggccacggcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggcaa 281
Query: 254 gagctgcaggctgcggtggatcaactaccttcggccgg 291
||||||| |||| ||||||||||||||||| |||||||
Sbjct: 282 gagctgccggctccggtggatcaactacctgcggccgg 319
>gb|BI957410.1|BI957410 HVSMEn0009G13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009G13f, mRNA sequence
Length = 673
Score = 83.8 bits (42), Expect = 5e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 194 ccacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaa 253
||||||||||||| |||| ||||||| ||| | |||||||||| | |||| ||||||
Sbjct: 43 ccacggccacggcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggcaa 102
Query: 254 gagctgcaggctgcggtggatcaactaccttcggccgg 291
||||||| |||| ||||||||||||||||| |||||||
Sbjct: 103 gagctgccggctccggtggatcaactacctgcggccgg 140
>gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024H06f, mRNA sequence
Length = 906
Score = 83.8 bits (42), Expect = 5e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 194 ccacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaa 253
||||||||||||| |||| ||||||| ||| | |||||||||| | |||| ||||||
Sbjct: 217 ccacggccacggcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggcaa 276
Query: 254 gagctgcaggctgcggtggatcaactaccttcggccgg 291
||||||| |||| ||||||||||||||||| |||||||
Sbjct: 277 gagctgccggctccggtggatcaactacctgcggccgg 314
>gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0018A12f, mRNA sequence
Length = 777
Score = 83.8 bits (42), Expect = 5e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 194 ccacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaa 253
||||||||||||| |||| ||||||| ||| | |||||||||| | |||| ||||||
Sbjct: 207 ccacggccacggcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggcaa 266
Query: 254 gagctgcaggctgcggtggatcaactaccttcggccgg 291
||||||| |||| ||||||||||||||||| |||||||
Sbjct: 267 gagctgccggctccggtggatcaactacctgcggccgg 304
>gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_H14 5', mRNA sequence
Length = 455
Score = 83.8 bits (42), Expect = 5e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 194 ccacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaa 253
||||||||||||| |||| ||||||| ||| | |||||||||| | |||| ||||||
Sbjct: 223 ccacggccacggcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggcaa 282
Query: 254 gagctgcaggctgcggtggatcaactaccttcggccgg 291
||||||| |||| ||||||||||||||||| |||||||
Sbjct: 283 gagctgccggctccggtggatcaactacctgcggccgg 320
>gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G02 5', mRNA sequence
Length = 604
Score = 83.8 bits (42), Expect = 5e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 194 ccacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaa 253
||||||||||||| |||| ||||||| ||| | |||||||||| | |||| ||||||
Sbjct: 223 ccacggccacggcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggcaa 282
Query: 254 gagctgcaggctgcggtggatcaactaccttcggccgg 291
||||||| |||| ||||||||||||||||| |||||||
Sbjct: 283 gagctgccggctccggtggatcaactacctgcggccgg 320
>gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G03 5', mRNA sequence
Length = 501
Score = 83.8 bits (42), Expect = 5e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 194 ccacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaa 253
||||||||||||| |||| ||||||| ||| | |||||||||| | |||| ||||||
Sbjct: 223 ccacggccacggcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggcaa 282
Query: 254 gagctgcaggctgcggtggatcaactaccttcggccgg 291
||||||| |||| ||||||||||||||||| |||||||
Sbjct: 283 gagctgccggctccggtggatcaactacctgcggccgg 320
>gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_C21 5', mRNA sequence
Length = 681
Score = 83.8 bits (42), Expect = 5e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 194 ccacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaa 253
||||||||||||| |||| ||||||| ||| | |||||||||| | |||| ||||||
Sbjct: 211 ccacggccacggcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggcaa 270
Query: 254 gagctgcaggctgcggtggatcaactaccttcggccgg 291
||||||| |||| ||||||||||||||||| |||||||
Sbjct: 271 gagctgccggctccggtggatcaactacctgcggccgg 308
>gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. vulgare cDNA clone HX13G05
5-PRIME, mRNA sequence
Length = 639
Score = 83.8 bits (42), Expect = 5e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 194 ccacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaa 253
||||||||||||| |||| ||||||| ||| | |||||||||| | |||| ||||||
Sbjct: 224 ccacggccacggcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggcaa 283
Query: 254 gagctgcaggctgcggtggatcaactaccttcggccgg 291
||||||| |||| ||||||||||||||||| |||||||
Sbjct: 284 gagctgccggctccggtggatcaactacctgcggccgg 321
>emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcription factor
Length = 1180
Score = 83.8 bits (42), Expect = 5e-015
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 194 ccacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaa 253
||||||||||||| |||| ||||||| ||| | |||||||||| | |||| ||||||
Sbjct: 89 ccacggccacggcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggcaa 148
Query: 254 gagctgcaggctgcggtggatcaactaccttcggccgg 291
||||||| |||| ||||||||||||||||| |||||||
Sbjct: 149 gagctgccggctccggtggatcaactacctgcggccgg 186
>gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005B14f, mRNA sequence
Length = 935
Score = 81.8 bits (41), Expect = 2e-014
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 195 cacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaag 254
|||||||||||| |||| ||||||| ||| | |||||||||| | |||| |||||||
Sbjct: 222 cacggccacggcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggcaag 281
Query: 255 agctgcaggctgcggtggatcaactaccttcggccgg 291
|||||| |||| ||||||||||||||||| |||||||
Sbjct: 282 agctgccggctccggtggatcaactacctgcggccgg 318
>gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002J21f, mRNA sequence
Length = 845
Score = 75.8 bits (38), Expect = 1e-012
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 198 ggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggcaagagc 257
|||||| ||||||||||||| ||||| ||| |||||||| ||||| ||||||||||
Sbjct: 141 ggccacagctgctggagcgccgtccccaagaacgccgggctacagcgctgcggcaagagc 200
Query: 258 tgcaggctgcggtggatcaactacct 283
||| |||| |||||||||||||||||
Sbjct: 201 tgccggctccggtggatcaactacct 226
Score = 61.9 bits (31), Expect = 2e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactcgtacctcaagaaga 444
||||||||||||||||||| ||||||||||| | |||||||||
Sbjct: 345 gacaacgaggtcaagaacttctggaactcgtgcatcaagaaga 387
>gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01B16
3-PRIME, mRNA sequence
Length = 535
Score = 75.8 bits (38), Expect = 1e-012
Identities = 86/102 (84%)
Strand = Plus / Plus
Query: 342 ctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggcaggacc 401
|||||||||| |||||||||||||||||| |||||| ||| |||| ||| ||||
Sbjct: 343 ctccacgccatcgtcggcaacaagtggtccatgatcgcggcgcagctgcccggccggacg 402
Query: 402 gacaacgaggtcaagaactactggaactcgtacctcaagaag 443
||||||||| ||||||||||||||||| | |||||||||||
Sbjct: 403 gacaacgagatcaagaactactggaacaccaacctcaagaag 444
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 248 cggcaagagctgcaggctgcggtggatcaactaccttcggccgg 291
||||||||||||| |||||||||||| |||||||| |||||||
Sbjct: 249 cggcaagagctgccggctgcggtggacgaactacctccggccgg 292
>gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E02f, mRNA sequence
Length = 796
Score = 69.9 bits (35), Expect = 8e-011
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 249 ggcaagagctgcaggctgcggtggatcaactacct 283
|||||||||||||||||||||||||||||||||||
Sbjct: 358 ggcaagagctgcaggctgcggtggatcaactacct 392
Score = 42.1 bits (21), Expect = 0.018
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaactc 430
|||||||| |||||||||||||||||||
Sbjct: 511 gacaacgaaatcaagaactactggaactc 539
>gb|BF619532.3|BF619532 HVSMEc0003P10f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0003P10f, mRNA sequence
Length = 859
Score = 69.9 bits (35), Expect = 8e-011
Identities = 83/99 (83%)
Strand = Plus / Plus
Query: 193 tccacggccacggctgctggagcgcgctccccgcgaaagccgggctccagcggaacggca 252
||||||||||| || |||| ||||||| ||| | |||||||||| | |||| |||||
Sbjct: 214 tccacggccacagcaactggcgcgcgctgcccaagcaagccgggcttctgcggtgcggca 273
Query: 253 agagctgcaggctgcggtggatcaactaccttcggccgg 291
|||||||| || | ||||||||||||||||| |||||||
Sbjct: 274 agagctgccggatccggtggatcaactacctgcggccgg 312
>gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. vulgare cDNA clone HI10A14
5-PRIME, mRNA sequence
Length = 580
Score = 69.9 bits (35), Expect = 8e-011
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 249 ggcaagagctgcaggctgcggtggatcaactacct 283
|||||||||||||||||||||||||||||||||||
Sbjct: 208 ggcaagagctgcaggctgcggtggatcaactacct 242
>gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0017F20f, mRNA sequence
Length = 786
Score = 63.9 bits (32), Expect = 5e-009
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 341 cctccacgccacgctcggcaacaagtggtccaggatcgcacggcacttgcctggcaggac 400
||||||| ||| ||||||||||||||||| |||||| ||| |||| ||| | ||
Sbjct: 353 cctccactccatcctcggcaacaagtggtctcagatcgccgcgcagctgcccggccgcac 412
Query: 401 cgacaacgaggtcaagaactactggaactcgtacctcaagaaga 444
|||||||||||||||||||| ||||||||| | | |||||||||
Sbjct: 413 cgacaacgaggtcaagaacttctggaactccttcatcaagaaga 456
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggatcaactacct 283
||||||||||||||| ||||||| ||||||||
Sbjct: 264 aagagctgcaggctgaggtggataaactacct 295
Score = 42.1 bits (21), Expect = 0.018
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 144 ggcctgtggtcgccggaggaggaccagaa 172
||||| |||||||||||||||||| ||||
Sbjct: 155 ggcctctggtcgccggaggaggacgagaa 183
>gb|BI958189.1|BI958189 HVSMEn0013M24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013M24f, mRNA sequence
Length = 471
Score = 63.9 bits (32), Expect = 5e-009
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggatcaactacct 283
||||||||||||||||||||||||||||||||
Sbjct: 313 aagagctgcaggctgcggtggatcaactacct 344
>gb|BF620286.3|BF620286 HVSMEc0019F08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019F08f, mRNA sequence
Length = 690
Score = 63.9 bits (32), Expect = 5e-009
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaactcgtacctcaagaagagg 446
|||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 320 accgacaacgagatcaagaactactggaacacccacctcaagaagagg 367
>gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. vulgare cDNA clone HI05J08
5-PRIME, mRNA sequence
Length = 436
Score = 63.9 bits (32), Expect = 5e-009
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 248 cggcaagagctgcaggctgcggtggatcaactacct 283
||||||||||||| ||||||||||||||||||||||
Sbjct: 253 cggcaagagctgccggctgcggtggatcaactacct 288
>gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002G15f, mRNA sequence
Length = 853
Score = 61.9 bits (31), Expect = 2e-008
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 354 ctcggcaacaagtggtccaggatcgcacggcacttgcctggcaggaccgacaacgaggtc 413
||||||||||||||||| |||||| ||| |||| ||| | |||||||||||||||
Sbjct: 446 ctcggcaacaagtggtctcagatcgccgcgcagctgcccggccgcaccgacaacgaggtc 505
Query: 414 aagaactactggaactcgtacctcaagaaga 444
||||||| ||||||||| | | |||||||||
Sbjct: 506 aagaacttctggaactccttcatcaagaaga 536
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggatcaactacct 283
||||||||||||||| ||||||| ||||||||
Sbjct: 344 aagagctgcaggctgaggtggataaactacct 375
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 144 ggcctgtggtcgccggaggaggaccagaagct 175
||||| |||||||||||||||||| |||||||
Sbjct: 236 ggcctctggtcgccggaggaggacgagaagct 267
>gb|BQ764651.1|BQ764651 EBca01_SQ004_C14_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_C14 5', mRNA sequence
Length = 576
Score = 61.9 bits (31), Expect = 2e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 243 cggaacggcaagagctgcaggctgcggtggatcaactaccttcggccggggctgaagcac 302
|||||||| ||||||||||||||||||||| | |||||||| |||||||| || || |
Sbjct: 205 cggaacgggaagagctgcaggctgcggtggctaaactacctcaggccggggttgcggcgc 264
Query: 303 ggcatgttctccccggaggagga 325
|||| |||| |||||||||||
Sbjct: 265 ggcagcatctcgccggaggagga 287
Score = 60.0 bits (30), Expect = 8e-008
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 397 ggaccgacaacgaggtcaagaactactgga 426
||||||||||||||||||||||||||||||
Sbjct: 359 ggaccgacaacgaggtcaagaactactgga 388
>gb|CK123590.1|CK123590 BES1824104i24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I244 5-PRIME, mRNA sequence
Length = 284
Score = 60.0 bits (30), Expect = 8e-008
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggatcaactaccttcggccgggg 293
||||||||| ||||||||||| |||||||||| |||||||||
Sbjct: 176 aagagctgccggctgcggtggctcaactacctccggccgggg 217
>gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M184 5-PRIME, mRNA sequence
Length = 506
Score = 60.0 bits (30), Expect = 8e-008
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 252 aagagctgcaggctgcggtggatcaactaccttcggccgggg 293
||||||||| ||||||||||| |||||||||| |||||||||
Sbjct: 175 aagagctgccggctgcggtggctcaactacctccggccgggg 216
Score = 38.2 bits (19), Expect = 0.28
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 402 gacaacgaggtcaagaactactggaac 428
||||| ||| |||||||||||||||||
Sbjct: 325 gacaatgagatcaagaactactggaac 351
>gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004H07f, mRNA sequence
Length = 756
Score = 58.0 bits (29), Expect = 3e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 388 tgcctggcaggaccgacaacgaggtcaagaactactggaac 428
|||| |||||||| ||||||||| |||||||||||||||||
Sbjct: 338 tgccgggcaggacggacaacgagatcaagaactactggaac 378
>gb|BQ753632.1|BQ753632 EBan01_SQ004_M23_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_M23 5', mRNA sequence
Length = 416
Score = 58.0 bits (29), Expect = 3e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 396 aggaccgacaacgaggtcaagaactactggaac 428
||||| |||||||||||||||||||||||||||
Sbjct: 225 aggacggacaacgaggtcaagaactactggaac 257
>emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA
Length = 1102
Score = 58.0 bits (29), Expect = 3e-007
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 388 tgcctggcaggaccgacaacgaggtcaagaactactggaac 428
|||| |||||||| ||||||||| |||||||||||||||||
Sbjct: 330 tgccgggcaggacggacaacgagatcaagaactactggaac 370
>gb|BF262578.2|BF262578 HV_CEa0004G02f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0004G02f, mRNA sequence
Length = 869
Score = 56.0 bits (28), Expect = 1e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 393 ggcaggaccgacaacgaggtcaagaactactggaac 428
|||||||| |||||||| ||||||||||||||||||
Sbjct: 125 ggcaggacggacaacgatgtcaagaactactggaac 160
>gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E14f, mRNA sequence
Length = 635
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 137 ccgcaagggcctgtggtcgccggaggaggaccagaagctc 176
||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 121 ccgcaagggactgtggtcgcccgaggaggacgagaagctc 160
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 248 cggcaagagctgcaggctgcggtggatcaactacct 283
||||||||||||| | || |||||||||||||||||
Sbjct: 232 cggcaagagctgccgcctccggtggatcaactacct 267
>gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_O04 5', mRNA sequence
Length = 383
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 137 ccgcaagggcctgtggtcgccggaggaggaccagaagctc 176
||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 34 ccgcaagggactgtggtcgcccgaggaggacgagaagctc 73
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 248 cggcaagagctgcaggctgcggtggatcaactacct 283
||||||||||||| | || |||||||||||||||||
Sbjct: 145 cggcaagagctgccgcctccggtggatcaactacct 180
>gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. vulgare cDNA clone HM13L14
5-PRIME, mRNA sequence
Length = 648
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 137 ccgcaagggcctgtggtcgccggaggaggaccagaagctc 176
||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 130 ccgcaagggactgtggtcgcccgaggaggacgagaagctc 169
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 248 cggcaagagctgcaggctgcggtggatcaactacct 283
||||||||||||| | || |||||||||||||||||
Sbjct: 241 cggcaagagctgccgcctccggtggatcaactacct 276
>emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA
Length = 1270
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 137 ccgcaagggcctgtggtcgccggaggaggaccagaagctc 176
||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 106 ccgcaaggggctgtggtcgcccgaggaggacgagaagctc 145
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 248 cggcaagagctgcaggctgcggtggatcaactacct 283
||||||||||||| | || |||||||||||||||||
Sbjct: 217 cggcaagagctgccgcctccggtggatcaactacct 252
>emb|X70881.1|HVMYB3G H.vulgare myb3 gene
Length = 3241
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 137 ccgcaagggcctgtggtcgccggaggaggaccagaagctc 176
||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 1106 ccgcaaggggctgtggtcgcccgaggaggacgagaagctc 1145
Score = 48.1 bits (24), Expect = 3e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 248 cggcaagagctgcaggctgcggtggatcaactacct 283
||||||||||||| | || |||||||||||||||||
Sbjct: 1217 cggcaagagctgccgcctccggtggatcaactacct 1252
>gb|BF629773.1|BF629773 HVSMEb0013M11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013M11f, mRNA sequence
Length = 827
Score = 52.0 bits (26), Expect = 2e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaac 428
||||||||||| ||||||||||||||||||
Sbjct: 133 accgacaacgacgtcaagaactactggaac 162
>gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. vulgare cDNA clone HS02O24
5-PRIME, mRNA sequence
Length = 363
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 399 accgacaacgaggtcaagaactactggaactcgtacctcaag 440
||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 275 accgacaacgacatcaagaactactggaacacgcacctcaag 316
Score = 50.1 bits (25), Expect = 7e-005
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 250 gcaagagctgcaggctgcggtggatcaactaccttcggccggggctgaagcacggca 306
||||||||||| |||| ||||||| ||||||||| || |||||| | |||| |||||
Sbjct: 126 gcaagagctgccggctccggtggaccaactacctgcgcccggggatcaagcgcggca 182
>gb|CB876695.1|CB876695 HP02B11T HP Hordeum vulgare subsp. vulgare cDNA clone HP02B11
5-PRIME, mRNA sequence
Length = 637
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 250 gcaagagctgcaggctgcggtggatcaactacct 283
|||||||||| ||||||||||||| |||||||||
Sbjct: 283 gcaagagctgtaggctgcggtggaccaactacct 316
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,045
Number of Sequences: 312970
Number of extensions: 122045
Number of successful extensions: 42174
Number of sequences better than 0.5: 95
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 41907
Number of HSP's gapped (non-prelim): 244
length of query: 530
length of database: 175,134,539
effective HSP length: 19
effective length of query: 511
effective length of database: 169,188,109
effective search space: 86455123699
effective search space used: 86455123699
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)