BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478290.2.1
(1343 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL504252.1|AL504252 AL504252 Hordeum vulgare Barke roots... 262 3e-068
gb|BJ453869.1|BJ453869 BJ453869 K. Sato unpublished cDNA li... 262 3e-068
gb|CK125116.1|CK125116 BES1824106l24 BES1824 Hordeum vulgar... 262 3e-068
gb|AL504719.1|AL504719 AL504719 Hordeum vulgare Barke roots... 248 4e-064
gb|BJ461404.1|BJ461404 BJ461404 K. Sato unpublished cDNA li... 246 2e-063
gb|BI947127.1|BI947127 HVSMEl0003N07f Hordeum vulgare spike... 137 1e-030
gb|AL501583.1|AL501583 AL501583 Hordeum vulgare Barke roots... 117 1e-024
gb|AW982401.2|AW982401 HVSMEg0003C19f Hordeum vulgare pre-a... 80 2e-013
gb|AL502011.1|AL502011 AL502011 Hordeum vulgare Barke roots... 72 5e-011
gb|BI951782.1|BI951782 HVSMEm0002M12f Hordeum vulgare green... 66 3e-009
gb|BQ465184.1|BQ465184 HU02O05r HU Hordeum vulgare subsp. v... 60 2e-007
gb|BQ762675.1|BQ762675 EBro02_SQ004_O15 _R root, 3 week, hy... 60 2e-007
gb|BQ766925.1|BQ766925 EBro08_SQ007_B17_R root, 3 week, dro... 60 2e-007
gb|CA008912.1|CA008912 HU12I03r HU Hordeum vulgare subsp. v... 60 2e-007
gb|CA012046.1|CA012046 HT04E15r HT Hordeum vulgare subsp. v... 60 2e-007
gb|BF064456.3|BF064456 HV_CEb0015C20f Hordeum vulgare seedl... 48 8e-004
gb|BI778941.2|BI778941 EBro01_SQ002_C23_R root, 3 week, hyd... 44 0.012
gb|CV053763.1|CV053763 BNEL102h5 Barley EST endosperm libra... 44 0.012
gb|CV058220.1|CV058220 BNEL35f4 Barley EST endosperm librar... 44 0.012
gb|CV059054.1|CV059054 BNEL43h11 Barley EST endosperm libra... 44 0.012
gb|BF622848.2|BF622848 HVSMEa0009G21f Hordeum vulgare seedl... 42 0.047
gb|BQ763747.1|BQ763747 EBro03_SQ005_F07_R root, 3 week, wat... 42 0.047
gb|CB880243.1|CB880243 HM05O22w HM Hordeum vulgare subsp. v... 42 0.047
gb|BQ663493.1|BQ663493 HU02O05u HU Hordeum vulgare subsp. v... 40 0.18
gb|BQ759695.1|BQ759695 EBpi05_SQ004_H03_R pistil, 8 DPA, no... 40 0.18
>gb|AL504252.1|AL504252 AL504252 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04L02V 5', mRNA sequence
Length = 700
Score = 262 bits (132), Expect = 3e-068
Identities = 210/236 (88%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 342 gtgaacctcatcatcactgactactgcatgcctgggatgacaggatacgatctgctcaag 401
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
||||||||||||||||||||| |||| || |||||||| ||||||||||| || ||||||
Sbjct: 402 aagatcaaggagtcgtcgtctttcagggacatcccggttgtgatcatgtcatcggagaac 461
Query: 562 attccttcaaggatcaataggtgcctggaggaaggagctgacgagttcttcctaaaacct 621
|| ||||| || || || || ||||||||||||||||| | ||||||||||| |||||
Sbjct: 462 ataccttccagaattaacagatgcctggaggaaggagcaaatgagttcttcctgaaacca 521
Query: 622 gtgcggctatcagacatgaacaagctcaagccccacatactgaaaagcagatgcaa 677
|| |||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct: 522 gtacggctatcagacatgagcaagctcaagccccatataatgaaaagcagatgcaa 577
Score = 131 bits (66), Expect = 7e-029
Identities = 122/141 (86%)
Strand = Plus / Plus
Query: 233 cagagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcg 292
||||| |||||||||||||| |||| ||||| |||||| ||| ||||||||||||||||
Sbjct: 145 cagaggctccgttccatgtcttggccgtggatgacagcgtccttgacaggaagctcatcg 204
Query: 293 agaggctcctcaagacctcttccttccaagtgaccactgtcgactccgggagcaaggcgc 352
|||||||||||||||| ||||| |||||||| ||||||| || || |||| |||||| |
Sbjct: 205 agaggctcctcaagacatcttcgttccaagttaccactgnggattctgggaccaaggctc 264
Query: 353 tgcagttcctgggcctccatg 373
| |||||| |||| |||||||
Sbjct: 265 tccagttcttggggctccatg 285
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggata 139
|||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 342 gtgaacctcatcatcactgactactgcatgcctgggatgacaggata 388
>gb|BJ453869.1|BJ453869 BJ453869 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak44m13 5', mRNA sequence
Length = 641
Score = 262 bits (132), Expect = 3e-068
Identities = 210/236 (88%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 188 gtgaacctcatcatcactgactactgcatgcctgggatgacaggatacgatctgctcaag 247
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
||||||||||||||||||||| |||| || |||||||| ||||||||||| || ||||||
Sbjct: 248 aagatcaaggagtcgtcgtctttcagggacatcccggttgtgatcatgtcatcggagaac 307
Query: 562 attccttcaaggatcaataggtgcctggaggaaggagctgacgagttcttcctaaaacct 621
|| ||||| || || || || ||||||||||||||||| | ||||||||||| |||||
Sbjct: 308 ataccttccagaattaacagatgcctggaggaaggagcaaatgagttcttcctgaaacca 367
Query: 622 gtgcggctatcagacatgaacaagctcaagccccacatactgaaaagcagatgcaa 677
|| |||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct: 368 gtacggctatcagacatgagcaagctcaagccccatataatgaaaagcagatgcaa 423
Score = 125 bits (63), Expect = 4e-027
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||| |||| ||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 1 gttccatgtcttggccgtggatgacagcgtccttgacaggaagctcatcgagaggctcct 60
Query: 303 caagacctcttccttccaagtgaccactgtcgactccgggagcaaggcgctgcagttcct 362
|||||| ||||| |||||||| |||||||| || || |||| |||||| || |||||| |
Sbjct: 61 caagacatcttcgttccaagttaccactgtggattctgggaccaaggctctccagttctt 120
Query: 363 gggcctccatg 373
||| |||||||
Sbjct: 121 ggggctccatg 131
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggata 139
|||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 188 gtgaacctcatcatcactgactactgcatgcctgggatgacaggata 234
>gb|CK125116.1|CK125116 BES1824106l24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010L246 5-PRIME, mRNA sequence
Length = 777
Score = 262 bits (132), Expect = 3e-068
Identities = 210/236 (88%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 325 gtgaacctcatcatcactgactactgcatgcctgggatgacaggatacgatctgctcaag 384
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
||||||||||||||||||||| |||| || |||||||| ||||||||||| || ||||||
Sbjct: 385 aagatcaaggagtcgtcgtctttcagggacatcccggttgtgatcatgtcatcggagaac 444
Query: 562 attccttcaaggatcaataggtgcctggaggaaggagctgacgagttcttcctaaaacct 621
|| ||||| || || || || ||||||||||||||||| | ||||||||||| |||||
Sbjct: 445 ataccttccagaattaacagatgcctggaggaaggagcaaatgagttcttcctgaaacca 504
Query: 622 gtgcggctatcagacatgaacaagctcaagccccacatactgaaaagcagatgcaa 677
|| |||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct: 505 gtacggctatcagacatgagcaagctcaagccccatataatgaaaagcagatgcaa 560
Score = 137 bits (69), Expect = 1e-030
Identities = 123/141 (87%)
Strand = Plus / Plus
Query: 233 cagagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcg 292
||||| |||||||||||||| |||| ||||| |||||| ||| ||||||||||||||||
Sbjct: 128 cagaggctccgttccatgtcttggccgtggatgacagcgtccttgacaggaagctcatcg 187
Query: 293 agaggctcctcaagacctcttccttccaagtgaccactgtcgactccgggagcaaggcgc 352
|||||||||||||||| ||||| |||||||| |||||||| || || |||| |||||| |
Sbjct: 188 agaggctcctcaagacatcttcgttccaagttaccactgtggattctgggaccaaggctc 247
Query: 353 tgcagttcctgggcctccatg 373
| |||||| |||| |||||||
Sbjct: 248 tccagttcttggggctccatg 268
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggata 139
|||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 325 gtgaacctcatcatcactgactactgcatgcctgggatgacaggata 371
>gb|AL504719.1|AL504719 AL504719 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06C24V 5', mRNA sequence
Length = 699
Score = 248 bits (125), Expect = 4e-064
Identities = 210/237 (88%), Gaps = 1/237 (0%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 335 gtgaacctcatcatcactgactactgcatgcctgggatgacaggatacgatctgctcaag 394
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
||||||||||||||||||||| |||| || |||||||| ||||||||||| || ||||||
Sbjct: 395 aagatcaaggagtcgtcgtctttcagggacatcccggttgtgatcatgtcatcggagaac 454
Query: 562 attccttcaaggatcaataggtgcctggaggaaggagctgacgagttcttcctaaaacct 621
|| ||||| || || || || ||||||||||||||||| | ||||||||||| |||||
Sbjct: 455 ataccttccagaattaacagatgcctggaggaaggagcaaatgagttcttcctgaaacca 514
Query: 622 gtgcggctatc-agacatgaacaagctcaagccccacatactgaaaagcagatgcaa 677
|| |||||||| |||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct: 515 gtacggctatcaagacatgagcaagctcaagccccatataatgaaaagcagatgcaa 571
Score = 137 bits (69), Expect = 1e-030
Identities = 123/141 (87%)
Strand = Plus / Plus
Query: 233 cagagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcg 292
||||| |||||||||||||| |||| ||||| |||||| ||| ||||||||||||||||
Sbjct: 138 cagaggctccgttccatgtcttggccgtggatgacagcgtccttgacaggaagctcatcg 197
Query: 293 agaggctcctcaagacctcttccttccaagtgaccactgtcgactccgggagcaaggcgc 352
|||||||||||||||| ||||| |||||||| |||||||| || || |||| |||||| |
Sbjct: 198 agaggctcctcaagacatcttcgttccaagttaccactgtggattctgggaccaaggctc 257
Query: 353 tgcagttcctgggcctccatg 373
| |||||| |||| |||||||
Sbjct: 258 tccagttcttggggctccatg 278
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggata 139
|||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 335 gtgaacctcatcatcactgactactgcatgcctgggatgacaggata 381
>gb|BJ461404.1|BJ461404 BJ461404 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak44m13 3', mRNA sequence
Length = 651
Score = 246 bits (124), Expect = 2e-063
Identities = 201/227 (88%)
Strand = Plus / Minus
Query: 451 atcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaag 510
|||||||| ||||||||||||| ||| ||||||||||| || ||||||||||||||||||
Sbjct: 647 atcatcactgactactgcatgcntgggatgacaggatacgatctgctcaagaagatcaag 588
Query: 511 gagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattccttca 570
|||||||||||| |||| || |||||||| ||||||||||| || |||||||| |||||
Sbjct: 587 gagtcgtcgtctttcagggacatcccggttgtgatcatgtcatcggagaacataccttcc 528
Query: 571 aggatcaataggtgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggcta 630
|| || || || ||||||||||||||||| | ||||||||||| ||||| || ||||||
Sbjct: 527 agaattaacagatgcctggaggaaggagcaaatgagttcttcctgaaaccagtacggcta 468
Query: 631 tcagacatgaacaagctcaagccccacatactgaaaagcagatgcaa 677
|||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct: 467 tcagacatgagcaagctcaagccccatataatgaaaagcagatgcaa 421
Score = 54.0 bits (27), Expect = 1e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 102 atcatcacagactactgcatgcctggcatgacaggata 139
|||||||| ||||||||||||| ||| |||||||||||
Sbjct: 647 atcatcactgactactgcatgcntgggatgacaggata 610
>gb|BI947127.1|BI947127 HVSMEl0003N07f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0003N07f, mRNA sequence
Length = 1057
Score = 137 bits (69), Expect = 1e-030
Identities = 123/141 (87%)
Strand = Plus / Plus
Query: 233 cagagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcg 292
||||| |||||||||||||| |||| ||||| |||||| ||| ||||||||||||||||
Sbjct: 130 cagaggctccgttccatgtcttggccgtggatgacagcgtccttgacaggaagctcatcg 189
Query: 293 agaggctcctcaagacctcttccttccaagtgaccactgtcgactccgggagcaaggcgc 352
|||||||||||||||| ||||| |||||||| |||||||| || || |||| |||||| |
Sbjct: 190 agaggctcctcaagacatcttcgttccaagttaccactgtggattctgggaccaaggctc 249
Query: 353 tgcagttcctgggcctccatg 373
| |||||| |||| |||||||
Sbjct: 250 tccagttcttggggctccatg 270
>gb|AL501583.1|AL501583 AL501583 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04L02u 3', mRNA sequence
Length = 619
Score = 117 bits (59), Expect = 1e-024
Identities = 86/95 (90%)
Strand = Plus / Minus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
||||||||||||||||| | ||||||||||| ||||| || |||||||||||||||| |
Sbjct: 543 tgcctggaggaaggagcaaatgagttcttcctgaaaccagtacggctatcagacatgagc 484
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
|||||||||||||| ||| ||||||||||||||||
Sbjct: 483 aagctcaagccccatataatgaaaagcagatgcaa 449
Score = 42.1 bits (21), Expect = 0.047
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 914 tttgcaaaacggaacggaatctgtaaactgatactgcttga 954
||||||||| |||||||||| || ||| ||||||||||||
Sbjct: 63 tttgcaaaaaagaacggaatccgtgaacggatactgcttga 23
>gb|AW982401.2|AW982401 HVSMEg0003C19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003C19f, mRNA sequence
Length = 873
Score = 79.8 bits (40), Expect = 2e-013
Identities = 151/188 (80%)
Strand = Plus / Plus
Query: 464 actgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcgtctc 523
|||||||||| |||||||||||||| || ||||| | || | |||||| ||| || || |
Sbjct: 1 actgcatgccgggcatgacaggatacgatctgctgaggagggtcaaggggtcatcctcac 60
Query: 524 tcagagatatcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggt 583
| | || || |||||||||||||||||||||||||| | ||| | ||||||| ||||
Sbjct: 61 tgaaggacattccggtggtgatcatgtcctctgagaatgtgcctgccaggatcagcaggt 120
Query: 584 gcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaaca 643
|| ||||||| || || || ||||||||||| || || ||| ||| | |||||||| |
Sbjct: 121 gcttggaggatggcgcggaggagttcttcctcaagcccgtgaagctcgccgacatgaaga 180
Query: 644 agctcaag 651
||||||||
Sbjct: 181 agctcaag 188
Score = 42.1 bits (21), Expect = 0.047
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 115 actgcatgcctggcatgacaggata 139
|||||||||| ||||||||||||||
Sbjct: 1 actgcatgccgggcatgacaggata 25
>gb|AL502011.1|AL502011 AL502011 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06C24u 3', mRNA sequence
Length = 553
Score = 71.9 bits (36), Expect = 5e-011
Identities = 68/76 (89%), Gaps = 2/76 (2%)
Strand = Plus / Minus
Query: 604 gagttcttcctaaaacct-gtgcggctatcagac-atgaacaagctcaagccccacatac 661
||||||||||| ||||| || |||||||||||| |||| ||||||||||||||| |||
Sbjct: 524 gagttcttcctgaaacccagtacggctatcagaccatgagcaagctcaagccccatataa 465
Query: 662 tgaaaagcagatgcaa 677
||||||||||||||||
Sbjct: 464 tgaaaagcagatgcaa 449
Score = 42.1 bits (21), Expect = 0.047
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 914 tttgcaaaacggaacggaatctgtaaactgatactgcttga 954
||||||||| |||||||||| || ||| ||||||||||||
Sbjct: 63 tttgcaaaaaagaacggaatccgtgaacggatactgcttga 23
>gb|BI951782.1|BI951782 HVSMEm0002M12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0002M12f, mRNA sequence
Length = 812
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 428 atcaggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggat 487
||||||| |||| ||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct: 70 atcaggaggtgggcgtgaatttgatcatcactgactactgcatgccgggcatgacaggat 129
Query: 488 a 488
|
Sbjct: 130 a 130
Score = 65.9 bits (33), Expect = 3e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 79 atcaggatgtggctgtgaacctgatcatcacagactactgcatgcctggcatgacaggat 138
||||||| |||| ||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct: 70 atcaggaggtgggcgtgaatttgatcatcactgactactgcatgccgggcatgacaggat 129
Query: 139 a 139
|
Sbjct: 130 a 130
>gb|BQ465184.1|BQ465184 HU02O05r HU Hordeum vulgare subsp. vulgare cDNA clone HU02O05
5-PRIME, mRNA sequence
Length = 627
Score = 60.0 bits (30), Expect = 2e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||| |||||||||| |||||||| ||||| |||||||| || || || |||||||||
Sbjct: 16 gtgaacatgatcatcaccgactactggatgcccggcatgacggggtacgagctgctcaag 75
Query: 502 aagatcaaggagtcgtcg 519
||||||||||||||
Sbjct: 76 cgcgtcaaggagtcgtcg 93
>gb|BQ762675.1|BQ762675 EBro02_SQ004_O15 _R root, 3 week, hydroponic grown, low nitrogen,
cv Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA
clone EBro02_SQ004_O15 5', mRNA sequence
Length = 571
Score = 60.0 bits (30), Expect = 2e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||| |||||||||| |||||||| ||||| |||||||| || || || |||||||||
Sbjct: 430 gtgaacatgatcatcaccgactactggatgcccggcatgacggggtacgagctgctcaag 489
Query: 502 aagatcaaggagtcgtcg 519
||||||||||||||
Sbjct: 490 cgcgtcaaggagtcgtcg 507
>gb|BQ766925.1|BQ766925 EBro08_SQ007_B17_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_B17 5', mRNA sequence
Length = 554
Score = 60.0 bits (30), Expect = 2e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||| |||||||||| |||||||| ||||| |||||||| || || || |||||||||
Sbjct: 411 gtgaacatgatcatcaccgactactggatgcccggcatgacggggtacgagctgctcaag 470
Query: 502 aagatcaaggagtcgtcg 519
||||||||||||||
Sbjct: 471 cgcgtcaaggagtcgtcg 488
>gb|CA008912.1|CA008912 HU12I03r HU Hordeum vulgare subsp. vulgare cDNA clone HU12I03
5-PRIME, mRNA sequence
Length = 488
Score = 60.0 bits (30), Expect = 2e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||| |||||||||| |||||||| ||||| |||||||| || || || |||||||||
Sbjct: 84 gtgaacatgatcatcaccgactactggatgcccggcatgacggggtacgagctgctcaag 143
Query: 502 aagatcaaggagtcgtcg 519
||||||||||||||
Sbjct: 144 cgcgtcaaggagtcgtcg 161
>gb|CA012046.1|CA012046 HT04E15r HT Hordeum vulgare subsp. vulgare cDNA clone HT04E15
5-PRIME, mRNA sequence
Length = 533
Score = 60.0 bits (30), Expect = 2e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||| |||||||||| |||||||| ||||| |||||||| || || || |||||||||
Sbjct: 371 gtgaacatgatcatcaccgactactggatgcccggcatgacggggtacgagctgctcaag 430
Query: 502 aagatcaaggagtcgtcg 519
||||||||||||||
Sbjct: 431 cgcgtcaaggagtcgtcg 448
>gb|BF064456.3|BF064456 HV_CEb0015C20f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0015C20f, mRNA sequence
Length = 622
Score = 48.1 bits (24), Expect = 8e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 452 tcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaagg 511
||||||| |||||||| ||||| |||||||| || || || ||||||||| ||||||
Sbjct: 1 tcatcaccgactactggatgcccggcatgacggggtacgagctgctcaagcgcgtcaagg 60
Query: 512 agtcgtcg 519
||||||||
Sbjct: 61 agtcgtcg 68
>gb|BI778941.2|BI778941 EBro01_SQ002_C23_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ002_C23 5', mRNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaac 561
|||||||||||||||||||| || ||||||
Sbjct: 368 atcccggtggtgatcatgtcatccgagaac 397
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 448 ctgatcatcacagactactgcatgcc 473
||||||||||| ||||||||||||||
Sbjct: 284 ctgatcatcacggactactgcatgcc 309
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 99 ctgatcatcacagactactgcatgcc 124
||||||||||| ||||||||||||||
Sbjct: 284 ctgatcatcacggactactgcatgcc 309
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 250 gtcctggcggtggacgacagcctc 273
|||||||| |||||||||||||||
Sbjct: 146 gtcctggccgtggacgacagcctc 169
>gb|CV053763.1|CV053763 BNEL102h5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL102h5 5' similar to Oryza sativa,
mRNA sequence
Length = 439
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 281 ggaagctcatcgagaggctcctcaagacct 310
||||||||||||||| ||| ||||||||||
Sbjct: 195 ggaagctcatcgagatgctgctcaagacct 166
>gb|CV058220.1|CV058220 BNEL35f4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL35f4 5' similar to Oryza sativa,
mRNA sequence
Length = 439
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 281 ggaagctcatcgagaggctcctcaagacct 310
||||||||||||||| ||| ||||||||||
Sbjct: 195 ggaagctcatcgagatgctgctcaagacct 166
>gb|CV059054.1|CV059054 BNEL43h11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL43h11 5' similar to Oryza sativa,
mRNA sequence
Length = 439
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 281 ggaagctcatcgagaggctcctcaagacct 310
||||||||||||||| ||| ||||||||||
Sbjct: 195 ggaagctcatcgagatgctgctcaagacct 166
>gb|BF622848.2|BF622848 HVSMEa0009G21f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009G21f, mRNA sequence
Length = 698
Score = 42.1 bits (21), Expect = 0.047
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 804 ggcaaacagatcaaggcacag 824
|||||||||||||||||||||
Sbjct: 447 ggcaaacagatcaaggcacag 427
>gb|BQ763747.1|BQ763747 EBro03_SQ005_F07_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_F07 5', mRNA sequence
Length = 418
Score = 42.1 bits (21), Expect = 0.047
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 914 tttgcaaaacggaacggaatctgtaaactgatactgcttga 954
||||||||| |||||||||| || ||| ||||||||||||
Sbjct: 294 tttgcaaaaaagaacggaatccgtgaacggatactgcttga 334
>gb|CB880243.1|CB880243 HM05O22w HM Hordeum vulgare subsp. vulgare cDNA clone HM05O22
3-PRIME, mRNA sequence
Length = 623
Score = 42.1 bits (21), Expect = 0.047
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 914 tttgcaaaacggaacggaatctgtaaactgatactgcttga 954
||||||||| |||||||||| || ||| ||||||||||||
Sbjct: 112 tttgcaaaaaagaacggaatccgtgaacggatactgcttga 72
>gb|BQ663493.1|BQ663493 HU02O05u HU Hordeum vulgare subsp. vulgare cDNA clone HU02O05
3-PRIME, mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.18
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 460 gactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcgtcg 519
|||||||| ||||| |||||||| || || || ||||||||| ||||||||||||||
Sbjct: 593 gactactggatgcccggcatgacggggtacgagctgctcaagcgcgtcaaggagtcgtcg 534
>gb|BQ759695.1|BQ759695 EBpi05_SQ004_H03_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_H03 5', mRNA sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 207 tcgatcggtcatggcggcgg 226
||||||||||||||||||||
Sbjct: 27 tcgatcggtcatggcggcgg 46
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 151,969
Number of Sequences: 312970
Number of extensions: 151969
Number of successful extensions: 47495
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 47430
Number of HSP's gapped (non-prelim): 68
length of query: 1343
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1324
effective length of database: 169,188,109
effective search space: 224005056316
effective search space used: 224005056316
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)