BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455820.2.1
(1312 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA019419.1|CA019419 HV11O17r HV Hordeum vulgare subsp. v... 644 0.0
gb|BU995276.1|BU995276 HM09L23r HM Hordeum vulgare subsp. v... 533 e-150
gb|BU995027.1|BU995027 HM08P11r HM Hordeum vulgare subsp. v... 523 e-147
gb|BQ472211.1|BQ472211 HV04L17r HV Hordeum vulgare subsp. v... 474 e-132
gb|BQ768687.1|BQ768687 EBro08_SQ012_L08_R root, 3 week, dro... 474 e-132
gb|BU974803.1|BU974803 HB29C15r BC Hordeum vulgare subsp. v... 466 e-130
gb|BU974591.1|BU974591 HB28H04r BC Hordeum vulgare subsp. v... 462 e-128
gb|BG417012.1|BG417012 HVSMEk0015K11f Hordeum vulgare testa... 430 e-119
gb|BG300751.1|BG300751 HVSMEb0018E07f Hordeum vulgare seedl... 365 2e-099
gb|CV064104.1|CV064104 BNEL98b1 Barley EST endosperm librar... 301 3e-080
gb|CB881163.1|CB881163 HM08P11w HM Hordeum vulgare subsp. v... 270 1e-070
gb|CB881416.1|CB881416 HM09L23w HM Hordeum vulgare subsp. v... 228 4e-058
gb|CA015797.1|CA015797 HV11O17u HV Hordeum vulgare subsp. v... 224 6e-057
gb|BU974893.1|BU974893 HB29G22r BC Hordeum vulgare subsp. v... 210 9e-053
gb|BM374601.1|BM374601 EBma05_SQ002_C03_R maternal, 12 DPA,... 149 3e-034
gb|BQ664756.1|BQ664756 HV04L17u HV Hordeum vulgare subsp. v... 147 1e-033
gb|BI780945.1|BI780945 EBma05_SQ001_J20_R maternal, 12 DPA,... 135 4e-030
gb|BI957483.1|BI957483 HVSMEn0009N04f Hordeum vulgare rachi... 42 0.046
gb|BI960034.1|BI960034 HVSMEn0022P06f Hordeum vulgare rachi... 40 0.18
gb|BM369408.2|BM369408 EBem07_SQ003_H24_R embryo, 28 DPA, n... 40 0.18
gb|BM374455.2|BM374455 EBpi03_SQ003_K20_R pistil, 4 DPA, no... 40 0.18
>gb|CA019419.1|CA019419 HV11O17r HV Hordeum vulgare subsp. vulgare cDNA clone HV11O17
5-PRIME, mRNA sequence
Length = 692
Score = 644 bits (325), Expect = 0.0
Identities = 544/617 (88%)
Strand = Plus / Minus
Query: 478 gagccgccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtga 537
||||| |||||||| |||||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 690 gagcctccatacagtggcaggaagtttgatgggctccaagggaagtgatatccactgtga 631
Query: 538 gcttcaactgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgaggg 597
||||| || ||||| || |||||||| |||||||||||||| |||||||| | ||||||
Sbjct: 630 gcttccaccgtctctaacaccctcaaaaccatccacagccatagggtgaacaagtgaggg 571
Query: 598 ccagtaagagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgg 657
||||| |||||||| |||||||| | ||| |||||||||||||| |||||||| |||||
Sbjct: 570 ccagtcagagcagggccaacaaccgtggcaaatcccaggaacaatatttcagcagggtgt 511
Query: 658 gcatattccgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtgaacgtgt 717
||||||||||| |||| || || ||||| || || ||||||||||| ||||| || ||
Sbjct: 510 gcatattccgaagttaggccgaatggtgtagcatattcatggtggacactgtggacatgc 451
Query: 718 ttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctcaagg 777
|||||||||||||| ||||||| ||||||||||||||||||||||| ||||| || ||
Sbjct: 450 ttgtatagccatttggtatgcagagccctgtgcccccaatagaatatgaaatcttcgagt 391
Query: 778 acaaagtagaaaagaacttgagatacaacaaccgaccaatgtggcaaaggaagagagctc 837
| ||| || ||||||||||||||||||| |||| ||| ||||||| |||||||||||||
Sbjct: 390 ataaaataaaaaagaacttgagatacaattaccgtccagtgtggcagaggaagagagctc 331
Query: 838 ctgagacccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacat 897
|| || |||||||| || ||||||||||| |||||||||||||| |||| ||||||||
Sbjct: 330 ctcagccccatgaacttaaaggcaggataggagaaaatcatgactggcaaattcacacag 271
Query: 898 acatggtagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttc 957
||||||||||||||||| |||| |||||||||||| |||||||||| | ||||||||||
Sbjct: 270 acatggtagagaatgagccgcatgacacatctgttctggtaagcaggagcgttgctcttc 211
Query: 958 ttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccg 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 210 ttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaagccg 151
Query: 1018 gagaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcg 1077
|||||||||||||| |||||||||| | |||||||||||||||||| ||||||||||||
Sbjct: 150 gagaggaagaagacactctcgtggaggacgaaggtgacgacggtggccagctggaactcg 91
Query: 1078 gtgaagttggcgatcag 1094
||||||||| ||||||
Sbjct: 90 ctgaagttggtgatcag 74
>gb|BU995276.1|BU995276 HM09L23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09L23
5-PRIME, mRNA sequence
Length = 591
Score = 533 bits (269), Expect = e-150
Identities = 499/575 (86%), Gaps = 3/575 (0%)
Strand = Plus / Minus
Query: 372 gcgataatccttgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagtt 431
||||||| |||| || ||||| ||||||||||||||||||||||| || ||||| |||||
Sbjct: 591 gcgataacccttatctgtgccaaacaaccagtccatgtaaacaaaagtagaggcgtagtt 532
Query: 432 ccctgactttgtgtacagcacacggtgatggtagtcatggaagtccgagccgcc---ata 488
||||||||| ||||| |||||||| |||||||||||||||||||| |||| ||| |||
Sbjct: 531 ccctgacttggtgtagagcacacgatgatggtagtcatggaagtcagagctgcctccata 472
Query: 489 cagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaactgt 548
||| |||||||| |||||||||||||| ||||||||||| || ||||||||||| || ||
Sbjct: 471 cagtggcaggaagtttgatgggctccaagggaagtgatatccactgtgagcttccaccgt 412
Query: 549 ctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggccagtaagagc 608
||| || |||||||| |||||||||||||| |||||||| | ||||||||||| |||||
Sbjct: 411 ctctaacaccctcaaaaccatccacagccatagggtgaacaagtgagggccagtcagagc 352
Query: 609 aggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggcatattccga 668
||| |||||||| | ||| |||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 351 agggccaacaaccgtggcaaatcccaggaacaatatttcagcagggtgtgcatattccga 292
Query: 669 tgttaaaccaaagggtgtggcgtactcatggtggacgctgtgaacgtgtttgtatagcca 728
|||| || || ||||| || || ||||||||||| ||||| || || |||||||||||
Sbjct: 291 agttaggccgaatggtgtagcatattcatggtggacactgtggacatgcttgtatagcca 232
Query: 729 tttcgtatgcaatgccctgtgcccccaatagaatataaaatcctcaaggacaaagtagaa 788
||| ||||||| ||||||||||||||||||||||| ||||| || || | ||| || ||
Sbjct: 231 tttggtatgcagagccctgtgcccccaatagaatatgaaatcttcgagtataaaataaaa 172
Query: 789 aagaacttgagatacaacaaccgaccaatgtggcaaaggaagagagctcctgagacccat 848
||||||||||||||||| |||| ||| ||||||| ||||||||||||||| || |||||
Sbjct: 171 aagaacttgagatacaattaccgtccagtgtggcagaggaagagagctcctcagccccat 112
Query: 849 gaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacatggtagag 908
||| || ||||||||||| |||||||||||||| |||| |||||||| |||||||||||
Sbjct: 111 gaacttaaaggcaggataggagaaaatcatgactggcaaattcacacagacatggtagag 52
Query: 909 aatgaggcgcaagacacatctgttttggtaagcag 943
|||||| |||| |||||||||||| ||||||||||
Sbjct: 51 aatgagccgcatgacacatctgttctggtaagcag 17
>gb|BU995027.1|BU995027 HM08P11r HM Hordeum vulgare subsp. vulgare cDNA clone HM08P11
5-PRIME, mRNA sequence
Length = 621
Score = 523 bits (264), Expect = e-147
Identities = 501/578 (86%), Gaps = 4/578 (0%)
Strand = Plus / Minus
Query: 369 cttgcgataatccttgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcata 428
|||||||||| |||| || ||||| ||||||||||||||||||||||| || ||||| ||
Sbjct: 621 cttgcgataacccttatctgtgccaaacaaccagtccatgtaaacaaaagtagaggcgta 562
Query: 429 gttccctgactttgtgtacagcacacggtgatggtagtcatggaagtccgagccgcc--- 485
|||||||||||| ||||| |||||||| |||||||||||||||||||| |||| |||
Sbjct: 561 gttccctgacttggtgtagagcacacgatgatggtagtcatggaagtcagagctgcctcc 502
Query: 486 atacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaac 545
|||||| |||||||| |||||||||||||| ||||||||||| || ||||||||||| ||
Sbjct: 501 atacagtggcaggaagtttgatgggctccaagggaagtgatatccactgtgagcttccac 442
Query: 546 tgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggccagtaag 605
||||| || |||||||| |||||||||||||| |||||||| | ||||||||||| ||
Sbjct: 441 cgtctctaacaccctcaaaaccatccacagccatagggtgaacaagtgagggccagtcag 382
Query: 606 agcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggcatattc 665
|||||| |||||||| | ||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 381 agcagggccaacaaccgtggcaaatcccaggaacaatatttcagcagggtgtgcatattc 322
Query: 666 cgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtgaacgtgtttgtatag 725
||| |||| || || ||||| || || ||||||||||| ||||| || || ||||||||
Sbjct: 321 cgaagttaggccgaatggtgtagcatattcatggtggacactgtggacatgcttgtatag 262
Query: 726 ccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctcaaggacaaagta 785
|||||| ||||||| ||||||||||||||||||||||| ||||| || || | ||| ||
Sbjct: 261 ccatttggtatgcagagccctgtgcccccaatagaatatgaaatcttcgagtataaaata 202
Query: 786 gaaaagaacttgagatacaacaaccgaccaatgtggcaaaggaagagagctcctgagacc 845
||||||||||||||||||| |||| ||| || |||| ||||||||||||||| || ||
Sbjct: 201 aaaaagaacttgagatacaattaccgtccagtg-ggcagaggaagagagctcctcagccc 143
Query: 846 catgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacatggta 905
|||||| || ||||||||||| |||||||||||||| |||| |||||||| ||||||||
Sbjct: 142 catgaacttaaaggcaggataggagaaaatcatgactggcaaattcacacagacatggta 83
Query: 906 gagaatgaggcgcaagacacatctgttttggtaagcag 943
||||||||| |||| |||||||||||| ||||||||||
Sbjct: 82 gagaatgagccgcatgacacatctgttctggtaagcag 45
>gb|BQ472211.1|BQ472211 HV04L17r HV Hordeum vulgare subsp. vulgare cDNA clone HV04L17
5-PRIME, mRNA sequence
Length = 613
Score = 474 bits (239), Expect = e-132
Identities = 392/443 (88%)
Strand = Plus / Minus
Query: 652 gggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtga 711
||||| ||||||||||| |||| || || ||||| || || ||||||||||| |||||
Sbjct: 609 gggtgtgcatattccgaagttaggccgaatggtgtagcatattcatggtggacactgtgg 550
Query: 712 acgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcc 771
|| || |||||||||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct: 549 acatgcttgtatagccatttggtatgcagagccctgtgcccccaatagaatatgaaatct 490
Query: 772 tcaaggacaaagtagaaaagaacttgagatacaacaaccgaccaatgtggcaaaggaaga 831
|| || | ||| || ||||||||||||||||||| |||| ||| ||||||| |||||||
Sbjct: 489 tcgagtataaaataaaaaagaacttgagatacaattaccgtccagtgtggcagaggaaga 430
Query: 832 gagctcctgagacccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttc 891
|||||||| || |||||||| || ||||||||||| |||||||||||||| |||| |||
Sbjct: 429 gagctcctcagccccatgaacttaaaggcaggataggagaaaatcatgactggcaaattc 370
Query: 892 acacatacatggtagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttg 951
||||| ||||||||||||||||| |||| |||||||||||| |||||||||| | ||||
Sbjct: 369 acacagacatggtagagaatgagccgcatgacacatctgttctggtaagcaggagcgttg 310
Query: 952 ctcttcttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggagggg 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctcttcttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggagggg 250
Query: 1012 aggccggagaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctgg 1071
| |||||||||||||||||| |||||||||| | |||||||||||||||||| ||||||
Sbjct: 249 aagccggagaggaagaagacactctcgtggaggacgaaggtgacgacggtggccagctgg 190
Query: 1072 aactcggtgaagttggcgatcag 1094
|||||| ||||||||| ||||||
Sbjct: 189 aactcgctgaagttggtgatcag 167
>gb|BQ768687.1|BQ768687 EBro08_SQ012_L08_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_L08 5', mRNA sequence
Length = 538
Score = 474 bits (239), Expect = e-132
Identities = 392/443 (88%)
Strand = Plus / Minus
Query: 652 gggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtga 711
||||| ||||||||||| |||| || || ||||| || || ||||||||||| |||||
Sbjct: 535 gggtgtgcatattccgaagttaggccgaatggtgtagcatattcatggtggacactgtgg 476
Query: 712 acgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcc 771
|| || |||||||||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct: 475 acatgcttgtatagccatttggtatgcagagccctgtgcccccaatagaatatgaaatct 416
Query: 772 tcaaggacaaagtagaaaagaacttgagatacaacaaccgaccaatgtggcaaaggaaga 831
|| || | ||| || ||||||||||||||||||| |||| ||| ||||||| |||||||
Sbjct: 415 tcgagtataaaataaaaaagaacttgagatacaattaccgtccagtgtggcagaggaaga 356
Query: 832 gagctcctgagacccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttc 891
|||||||| || |||||||| || ||||||||||| |||||||||||||| |||| |||
Sbjct: 355 gagctcctcagccccatgaacttaaaggcaggataggagaaaatcatgactggcaaattc 296
Query: 892 acacatacatggtagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttg 951
||||| ||||||||||||||||| |||| |||||||||||| |||||||||| | ||||
Sbjct: 295 acacagacatggtagagaatgagccgcatgacacatctgttctggtaagcaggagcgttg 236
Query: 952 ctcttcttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggagggg 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ctcttcttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggagggg 176
Query: 1012 aggccggagaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctgg 1071
| |||||||||||||||||| |||||||||| | |||||||||||||||||| ||||||
Sbjct: 175 aagccggagaggaagaagacactctcgtggaggacgaaggtgacgacggtggccagctgg 116
Query: 1072 aactcggtgaagttggcgatcag 1094
|||||| ||||||||| ||||||
Sbjct: 115 aactcgctgaagttggtgatcag 93
>gb|BU974803.1|BU974803 HB29C15r BC Hordeum vulgare subsp. vulgare cDNA clone HB29C15
5-PRIME, mRNA sequence
Length = 493
Score = 466 bits (235), Expect = e-130
Identities = 421/483 (87%)
Strand = Plus / Minus
Query: 505 gatgggctccatgggaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaac 564
||||||||||| ||||||||||| || ||||||||||| || ||||| || ||||||||
Sbjct: 493 gatgggctccaagggaagtgatatccactgtgagcttccaccgtctctaacaccctcaaa 434
Query: 565 accatccacagccacagggtgaagagatgagggccagtaagagcaggaccaacaactggg 624
|||||||||||||| |||||||| | ||||||||||| |||||||| |||||||| | |
Sbjct: 433 accatccacagccatagggtgaacaagtgagggccagtcagagcagggccaacaaccgtg 374
Query: 625 gcgaatcccaggaacaaaatttcagctgggtgggcatattccgatgttaaaccaaagggt 684
|| |||||||||||||| |||||||| ||||| ||||||||||| |||| || || |||
Sbjct: 373 gcaaatcccaggaacaatatttcagcagggtgtgcatattccgaagttaggccgaatggt 314
Query: 685 gtggcgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgcc 744
|| || || ||||||||||| ||||| || || |||||||||||||| ||||||| |||
Sbjct: 313 gtagcatattcatggtggacactgtggacatgcttgtatagccatttggtatgcagagcc 254
Query: 745 ctgtgcccccaatagaatataaaatcctcaaggacaaagtagaaaagaacttgagataca 804
|||||||||||||||||||| ||||| || || | ||| || ||||||||||||||||||
Sbjct: 253 ctgtgcccccaatagaatatgaaatcttcgagtataaaataaaaaagaacttgagataca 194
Query: 805 acaaccgaccaatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcagga 864
| |||| ||| ||||||| ||||||||||||||| || |||||||| || |||||||||
Sbjct: 193 attaccgtccagtgtggcagaggaagagagctcctcagccccatgaacttaaaggcagga 134
Query: 865 tacgagaaaatcatgacaggcaggttcacacatacatggtagagaatgaggcgcaagaca 924
|| |||||||||||||| |||| |||||||| ||||||||||||||||| |||| ||||
Sbjct: 133 taggagaaaatcatgactggcaaattcacacagacatggtagagaatgagccgcatgaca 74
Query: 925 catctgttttggtaagcagaggtgttgctcttcttctggatcttgtacttggcgaagagt 984
|||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 73 catctgttctggtaagcaggagcgttgctcttcttctggatcttgtacttggcgaagagt 14
Query: 985 ccg 987
|||
Sbjct: 13 ccg 11
>gb|BU974591.1|BU974591 HB28H04r BC Hordeum vulgare subsp. vulgare cDNA clone HB28H04
5-PRIME, mRNA sequence
Length = 434
Score = 462 bits (233), Expect = e-128
Identities = 359/401 (89%)
Strand = Plus / Minus
Query: 694 tcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccc 753
||||||||||| ||||| || || |||||||||||||| ||||||| ||||||||||||
Sbjct: 413 tcatggtggacactgtggacatgcttgtatagccatttggtatgcagagccctgtgcccc 354
Query: 754 caatagaatataaaatcctcaaggacaaagtagaaaagaacttgagatacaacaaccgac 813
||||||||||| ||||| || || | ||| || ||||||||||||||||||| |||| |
Sbjct: 353 caatagaatatgaaatcttcgagtataaaataaaaaagaacttgagatacaattaccgtc 294
Query: 814 caatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcaggatacgagaaa 873
|| ||||||| ||||||||||||||| || |||||||| || ||||||||||| ||||||
Sbjct: 293 cagtgtggcagaggaagagagctcctcagccccatgaacttaaaggcaggataggagaaa 234
Query: 874 atcatgacaggcaggttcacacatacatggtagagaatgaggcgcaagacacatctgttt 933
|||||||| |||| |||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 233 atcatgactggcaaattcacacagacatggtagagaatgagccgcatgacacatctgttc 174
Query: 934 tggtaagcagaggtgttgctcttcttctggatcttgtacttggcgaagagtccgaagcgc 993
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tggtaagcaggagcgttgctcttcttctggatcttgtacttggcgaagagtccgaagcgc 114
Query: 994 tcgaagaggagggaggggaggccggagaggaagaagacggtctcgtggagcaggaaggtg 1053
||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||
Sbjct: 113 tcgaagaggagggaggggaagccggagaggaagaagacactctcgtggaggacgaaggtg 54
Query: 1054 acgacggtggcgagctggaactcggtgaagttggcgatcag 1094
||||||||||| |||||||||||| ||||||||| ||||||
Sbjct: 53 acgacggtggccagctggaactcgctgaagttggtgatcag 13
>gb|BG417012.1|BG417012 HVSMEk0015K11f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0015K11f, mRNA sequence
Length = 502
Score = 430 bits (217), Expect = e-119
Identities = 334/373 (89%)
Strand = Plus / Minus
Query: 722 atagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctcaaggacaa 781
|||||||||| ||||||| ||||||||||||||||||||||| ||||| || || | ||
Sbjct: 501 atagccatttggtatgcagagccctgtgcccccaatagaatatgaaatcttcgagtataa 442
Query: 782 agtagaaaagaacttgagatacaacaaccgaccaatgtggcaaaggaagagagctcctga 841
| || ||||||||||||||||||| |||| ||| ||||||| ||||||||||||||| |
Sbjct: 441 aataaaaaagaacttgagatacaattaccgtccagtgtggcagaggaagagagctcctca 382
Query: 842 gacccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacat 901
| |||||||| || ||||||||||| |||| ||||||||| |||| |||||||| ||||
Sbjct: 381 gccccatgaacttaaaggcaggataggagataatcatgactggcaaattcacacagacat 322
Query: 902 ggtagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttcttct 961
||||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 321 ggtagagaatgagccgcatgacacatctgttttggtaagcaggagcgttgctcttcttct 262
Query: 962 ggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccggaga 1021
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 261 ggatcttgtacttggcgaagagtccgaagcgctcgaataggagggaggggaagccggaga 202
Query: 1022 ggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggtga 1081
|||||||||| |||||||||| | |||||||||||||||||| |||||||||||| |||
Sbjct: 201 ggaagaagacactctcgtggaggatgaaggtgacgacggtggccagctggaactcgctga 142
Query: 1082 agttggcgatcag 1094
|||||| ||||||
Sbjct: 141 agttggtgatcag 129
>gb|BG300751.1|BG300751 HVSMEb0018E07f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0018E07f, mRNA sequence
Length = 620
Score = 365 bits (184), Expect = 2e-099
Identities = 346/401 (86%)
Strand = Plus / Minus
Query: 694 tcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccc 753
||||||||||| |||||| || ||| ||||| |||| ||||||| ||||||||||||
Sbjct: 485 tcatggtggacactgtgacaatgcttgaatagcaatttggtatgcagagccctgtgcccc 426
Query: 754 caatagaatataaaatcctcaaggacaaagtagaaaagaacttgagatacaacaaccgac 813
||||||||| | ||| || || | ||| || ||| |||||||||||| | ||| |
Sbjct: 425 anatagaatatgagatcttcgagtataaaataaaaagnaacttgagatactatttccgtc 366
Query: 814 caatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcaggatacgagaaa 873
|| ||||||| ||||||||||||||| || |||||||| || ||||||||||| ||||||
Sbjct: 365 cagtgtggcagaggaagagagctcctcagccccatgaacttaaaggcaggataggagaaa 306
Query: 874 atcatgacaggcaggttcacacatacatggtagagaatgaggcgcaagacacatctgttt 933
|||||||| |||| |||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 305 atcatgactggcanattcacacagacatggtagagaatgagccgcatgacacatctgttc 246
Query: 934 tggtaagcagaggtgttgctcttcttctggatcttgtacttggcgaagagtccgaagcgc 993
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tggtaagcaggagcgttgctcttcttctggatcttgtacttggcgaagagtccgaagcgc 186
Query: 994 tcgaagaggagggaggggaggccggagaggaagaagacggtctcgtggagcaggaaggtg 1053
||||||||||||||||||| |||||| || || ||||| |||||||||| | |||||||
Sbjct: 185 tcgaagaggagggaggggaagccggacagcaacaagacactctcgtggaggacgaaggtg 126
Query: 1054 acgacggtggcgagctggaactcggtgaagttggcgatcag 1094
||||||||||| |||||||||||| ||||||||| ||||||
Sbjct: 125 acgacggtggccagctggaactcgctgaagttggtgatcag 85
>gb|CV064104.1|CV064104 BNEL98b1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL98b1 5' similar to putative
sterol 4-alpha-methyl-oxidase, mRNA sequence
Length = 640
Score = 301 bits (152), Expect = 3e-080
Identities = 278/320 (86%)
Strand = Plus / Plus
Query: 318 agcttccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgata 377
|||||||||||| |||| || |||||||||| | | || |||| |||| |||||||||
Sbjct: 319 agcttccacaatttacaaatgcttcccttcttccccttccatggcttttgtcttgcgata 378
Query: 378 atccttgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctga 437
| |||| || ||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 379 acccttatctgtgccaaacaaccagtccatgtaaacaaaagtagaggcgtagttccctga 438
Query: 438 ctttgtgtacagcacacggtgatggtagtcatggaagtccgagccgccatacagcggcag 497
||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 439 cttggtgtagagcacacgatgatggtagtcatggaagtcagagcctccatacagtggcag 498
Query: 498 gaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaactgtctccaaaac 557
||| |||||||||||||| ||||||||||| || ||||||||||| || ||||| || ||
Sbjct: 499 gaagtttgatgggctccaagggaagtgatatccactgtgagcttccaccgtctctaacac 558
Query: 558 cctcaacaccatccacagccacagggtgaagagatgagggccagtaagagcaggaccaac 617
|||||| |||||||||||||| |||||||| | ||||||||||| |||||||| |||||
Sbjct: 559 cctcaaaaccatccacagccatagggtgaacaagtgagggccagtcagagcagggccaac 618
Query: 618 aactggggcgaatcccagga 637
||| | ||| ||||||||||
Sbjct: 619 aaccgtggcaaatcccagga 638
>gb|CB881163.1|CB881163 HM08P11w HM Hordeum vulgare subsp. vulgare cDNA clone HM08P11
3-PRIME, mRNA sequence
Length = 604
Score = 270 bits (136), Expect = 1e-070
Identities = 264/306 (86%), Gaps = 3/306 (0%)
Strand = Plus / Plus
Query: 318 agcttccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgata 377
|||||||||||| |||| || |||||||||| | | || |||| |||| |||||||||
Sbjct: 287 agcttccacaatttacaaatgcttcccttcttccccttccatggcttttgtcttgcgata 346
Query: 378 atccttgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctga 437
| |||| || ||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 347 acccttatctgtgccaaacaaccagtccatgtaaacaaaagtagaggcgtagttccctga 406
Query: 438 ctttgtgtacagcacacggtgatggtagtcatggaagtccga---gccgccatacagcgg 494
||| ||||| |||||||| |||||||||||||||||||| || ||| |||||||| ||
Sbjct: 407 cttggtgtagagcacacgatgatggtagtcatggaagtcagagctgcctccatacagtgg 466
Query: 495 caggaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaactgtctccaa 554
|||||| |||||||||||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct: 467 caggaagtttgatgggctccaagggaagtgatatccactgtgagcttccaccgtctctaa 526
Query: 555 aaccctcaacaccatccacagccacagggtgaagagatgagggccagtaagagcaggacc 614
|||||||| |||||||||||||| |||||||| | ||||||||||| |||||||| ||
Sbjct: 527 caccctcaaaaccatccacagccatagggtgaacaagtgagggccagtcagagcagggcc 586
Query: 615 aacaac 620
||||||
Sbjct: 587 aacaac 592
>gb|CB881416.1|CB881416 HM09L23w HM Hordeum vulgare subsp. vulgare cDNA clone HM09L23
3-PRIME, mRNA sequence
Length = 576
Score = 228 bits (115), Expect = 4e-058
Identities = 248/289 (85%), Gaps = 5/289 (1%)
Strand = Plus / Plus
Query: 318 agcttccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgata 377
|||||||||||| |||| || |||||||||| | | || |||| |||| |||||||||
Sbjct: 286 agcttccacaatttacaaatgcttcccttcttccccttccatggcttttgtcttgcgata 345
Query: 378 atccttgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctga 437
| |||| || ||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 346 acccttatctgtgccaaacaaccagtccatgtaaacaaaagtagaggcgtagttccctga 405
Query: 438 ctttgtgtacagcacacggtgatggtagtcatggaagtccga---gccgccatacagcgg 494
||| ||||| |||||||| |||||||||||||||||||| || ||| |||||||| ||
Sbjct: 406 cttggtgtagagcacacgatgatggtagtcatggaagtcagagctgcctccatacagtgg 465
Query: 495 caggaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaactgtctccaa 554
|||||| |||||||||||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct: 466 caggaagtttgatgggctccaagggaagtgatatccactgtgagcttccaccgtctctaa 525
Query: 555 -aaccctcaacaccatccacagccacagggtgaagagatgagggccagt 602
| ||||||| |||||||||||||| |||||||| | |||||||||||
Sbjct: 526 cacccctcaa-accatccacagccatagggtgaacaagtgagggccagt 573
>gb|CA015797.1|CA015797 HV11O17u HV Hordeum vulgare subsp. vulgare cDNA clone HV11O17
3-PRIME, mRNA sequence
Length = 536
Score = 224 bits (113), Expect = 6e-057
Identities = 197/225 (87%)
Strand = Plus / Plus
Query: 318 agcttccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgata 377
|||||||||||| |||| || |||||||||| | | || |||| |||| |||||||||
Sbjct: 311 agcttccacaatttacaaatgcttcccttcttccccttccatggcttttgtcttgcgata 370
Query: 378 atccttgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctga 437
| |||| || ||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 371 acccttatctgtgccaaacaaccagtccatgtaaacaaaagtagaggcgtagttccctga 430
Query: 438 ctttgtgtacagcacacggtgatggtagtcatggaagtccgagccgccatacagcggcag 497
||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 431 cttggtgtagagcacacgatgatggtagtcatggaagtcagagcctccatacagtggcag 490
Query: 498 gaaatttgatgggctccatgggaagtgatagccgctgtgagcttc 542
||| |||||||||||||| ||||||||||| || |||||||||||
Sbjct: 491 gaagtttgatgggctccaagggaagtgatatccactgtgagcttc 535
>gb|BU974893.1|BU974893 HB29G22r BC Hordeum vulgare subsp. vulgare cDNA clone HB29G22
5-PRIME, mRNA sequence
Length = 499
Score = 210 bits (106), Expect = 9e-053
Identities = 184/210 (87%)
Strand = Plus / Minus
Query: 318 agcttccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgata 377
|||||||||||| |||| || |||||||||| | | || |||| |||| |||||||||
Sbjct: 217 agcttccacaatttacaaatgcttcccttcttccccttccatggcttttgtcttgcgata 158
Query: 378 atccttgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctga 437
| |||| || ||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 157 acccttatctgtgccaaacaaccagtccatgtaaacaaaagtagaggcgtagttccctga 98
Query: 438 ctttgtgtacagcacacggtgatggtagtcatggaagtccgagccgccatacagcggcag 497
||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 97 cttggtgtagagcacacgatgatggtagtcatggaagtcagagcctccatacagtggcag 38
Query: 498 gaaatttgatgggctccatgggaagtgata 527
||| |||||||||||||| |||||||||||
Sbjct: 37 gaagtttgatgggctccaagggaagtgata 8
>gb|BM374601.1|BM374601 EBma05_SQ002_C03_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ002_C03 5', mRNA sequence
Length = 398
Score = 149 bits (75), Expect = 3e-034
Identities = 138/159 (86%)
Strand = Plus / Minus
Query: 318 agcttccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgata 377
|||||||||||| |||| || |||||||||| | | || |||| |||| |||||||||
Sbjct: 159 agcttccacaatttacaaatgcttcccttcttccccttccatggcttttgtcttgcgata 100
Query: 378 atccttgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctga 437
| |||| || ||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 99 acccttatctgtgccaaacaaccagtccatgtaaacaaaagtagaggcgtagttccctga 40
Query: 438 ctttgtgtacagcacacggtgatggtagtcatggaagtc 476
||| ||||| |||||||| ||||||||||||||||||||
Sbjct: 39 cttggtgtagagcacacgatgatggtagtcatggaagtc 1
>gb|BQ664756.1|BQ664756 HV04L17u HV Hordeum vulgare subsp. vulgare cDNA clone HV04L17
3-PRIME, mRNA sequence
Length = 615
Score = 147 bits (74), Expect = 1e-033
Identities = 137/158 (86%)
Strand = Plus / Plus
Query: 318 agcttccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgata 377
|||||||||||| |||| || |||||||||| | | || |||| |||| |||||||||
Sbjct: 458 agcttccacaatttacaaatgcttcccttcttccccttccatggcttttgtcttgcgata 517
Query: 378 atccttgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctga 437
| |||| || ||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 518 acccttatctgtgccaaacaaccagtccatgtaaacaaaagtagaggcgtagttccctga 577
Query: 438 ctttgtgtacagcacacggtgatggtagtcatggaagt 475
||| ||||| |||||||| |||||||||||||||||||
Sbjct: 578 cttggtgtagagcacacgatgatggtagtcatggaagt 615
>gb|BI780945.1|BI780945 EBma05_SQ001_J20_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_J20 5', mRNA sequence
Length = 398
Score = 135 bits (68), Expect = 4e-030
Identities = 131/152 (86%)
Strand = Plus / Minus
Query: 318 agcttccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgata 377
|||||||||||| |||| || |||||||||| | | || |||| |||| |||||||||
Sbjct: 159 agcttccacaatttacaaatgcttcccttcttccccttccatggcttttgtcttgcgata 100
Query: 378 atccttgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctga 437
| |||| || ||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 99 acccttatctgtgccaaacaaccagtccatgtaaacaaaagtagaggcgtagttccctga 40
Query: 438 ctttgtgtacagcacacggtgatggtagtcat 469
||| ||||| |||||||| |||||||||||||
Sbjct: 39 cttggtgtagagcacacgatgatggtagtcat 8
>gb|BI957483.1|BI957483 HVSMEn0009N04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009N04f, mRNA sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.046
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 451 acacggtgatggtagtcatgg 471
|||||||||||||||||||||
Sbjct: 505 acacggtgatggtagtcatgg 485
>gb|BI960034.1|BI960034 HVSMEn0022P06f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0022P06f,
mRNA sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1014 gccggagaggaagaagacgg 1033
||||||||||||||||||||
Sbjct: 303 gccggagaggaagaagacgg 284
>gb|BM369408.2|BM369408 EBem07_SQ003_H24_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_H24 5', mRNA sequence
Length = 519
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 163 accagggccaccagggcctc 182
||||||||||||||||||||
Sbjct: 461 accagggccaccagggcctc 442
>gb|BM374455.2|BM374455 EBpi03_SQ003_K20_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_K20 5', mRNA sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 163 accagggccaccagggcctc 182
||||||||||||||||||||
Sbjct: 457 accagggccaccagggcctc 438
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 164,337
Number of Sequences: 312970
Number of extensions: 164337
Number of successful extensions: 50224
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50192
Number of HSP's gapped (non-prelim): 26
length of query: 1312
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1293
effective length of database: 169,188,109
effective search space: 218760224937
effective search space used: 218760224937
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)