BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448655.2.1
(682 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA014369.1|CA014369 HT11C14r HT Hordeum vulgare subsp. v... 313 4e-084
gb|CK124192.1|CK124192 BES1824107f16 BES1824 Hordeum vulgar... 299 6e-080
gb|CA010209.1|CA010209 HT11C14u HT Hordeum vulgare subsp. v... 254 3e-066
gb|BU980982.1|BU980982 HA22E16r HA Hordeum vulgare subsp. v... 220 5e-056
gb|AL511115.1|AL511115 AL511115 Hordeum vulgare Barke devel... 210 4e-053
gb|BF622942.3|BF622942 HVSMEa0012C24f Hordeum vulgare seedl... 194 3e-048
gb|AL507854.1|AL507854 AL507854 Hordeum vulgare Barke devel... 135 2e-030
gb|CA009082.1|CA009082 HU13C01r HU Hordeum vulgare subsp. v... 119 1e-025
gb|BI957483.1|BI957483 HVSMEn0009N04f Hordeum vulgare rachi... 86 2e-015
gb|BM816351.1|BM816351 HB106B06_SK.ab1 HB Hordeum vulgare s... 80 1e-013
gb|BM816352.1|BM816352 HB106C03_SK.ab1 HB Hordeum vulgare s... 80 1e-013
gb|BJ456266.1|BJ456266 BJ456266 K. Sato unpublished cDNA li... 80 1e-013
gb|BQ468531.1|BQ468531 HM01I09T HM Hordeum vulgare subsp. v... 80 1e-013
gb|BM445019.2|BM445019 EBem09_SQ007_D04_R embryo, 1 Day ger... 68 4e-010
gb|BJ453141.1|BJ453141 BJ453141 K. Sato unpublished cDNA li... 62 3e-008
gb|BJ460691.1|BJ460691 BJ460691 K. Sato unpublished cDNA li... 62 3e-008
gb|BF622107.2|BF622107 HVSMEa0001M11f Hordeum vulgare seedl... 56 2e-006
gb|CD240741.1|CD240741 LP20295 Lemma/palea-enriched cDNA li... 54 6e-006
gb|CD240761.1|CD240761 LP20344 Lemma/palea-enriched cDNA li... 54 6e-006
gb|BJ447952.1|BJ447952 BJ447952 K. Sato unpublished cDNA li... 52 2e-005
gb|BJ451061.1|BJ451061 BJ451061 K. Sato unpublished cDNA li... 52 2e-005
gb|BJ455697.1|BJ455697 BJ455697 K. Sato unpublished cDNA li... 52 2e-005
gb|BJ458566.1|BJ458566 BJ458566 K. Sato unpublished cDNA li... 52 2e-005
gb|BF630613.2|BF630613 HVSMEb0012C20f Hordeum vulgare seedl... 38 0.37
gb|BG367870.1|BG367870 HVSMEi0014B22f Hordeum vulgare 20 DA... 38 0.37
gb|BE195648.3|BE195648 HVSMEh0090A21f Hordeum vulgare 5-45 ... 38 0.37
gb|BQ661016.1|BQ661016 HM01I09w HM Hordeum vulgare subsp. v... 38 0.37
>gb|CA014369.1|CA014369 HT11C14r HT Hordeum vulgare subsp. vulgare cDNA clone HT11C14
5-PRIME, mRNA sequence
Length = 644
Score = 313 bits (158), Expect = 4e-084
Identities = 293/338 (86%)
Strand = Plus / Plus
Query: 5 caccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgaggtg 64
||||| |||| ||| ||||| || || |||||||| ||||| || |||||||| ||||||
Sbjct: 295 caccacgagtacaccgcgcccattggcttcgcagcgccatacgctcactgggcagaggtg 354
Query: 65 ctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatcaca 124
|| ||||| |||||||||||||||| || || ||||||| |||||||||||||| ||
Sbjct: 355 ctcatacttggcatcccctccttcgctggcccggccattgcaccaggccacatgattacc 414
Query: 125 ttctggctctggattatactccgtcaggtggaggctatcgagacacatagcggctttgat 184
|||||||||||||||||||| |||||| |||| || || || ||||| ||||| ||||||
Sbjct: 415 ttctggctctggattatacttcgtcagatggaagccattgacacacacagcggttttgat 474
Query: 185 ttcccattcaccccgacaaagtatattccattctatggaggagcagaataccatgactat 244
|||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 475 ttcccattcagcctgacaaagtatattccgttctatggaggagcagaataccatgattat 534
Query: 245 catcattatgtaggaggccagagccaaagcaattttgcttctgttttcacttactgtgat 304
||||| || || |||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 535 catcactacgttggaggccaaagccagagcaattttgcttcggttttcacgtactgtgat 594
Query: 305 tacttatatggcactgacaaaggttacagattccacaa 342
||| | ||||| || |||| ||| ||||||||||||||
Sbjct: 595 tacctgtatgggaccgacagaggctacagattccacaa 632
>gb|CK124192.1|CK124192 BES1824107f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F167 5-PRIME, mRNA sequence
Length = 823
Score = 299 bits (151), Expect = 6e-080
Identities = 293/339 (86%), Gaps = 1/339 (0%)
Strand = Plus / Plus
Query: 5 caccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgaggtg 64
||||| |||| ||| ||||| || || |||||||| ||||| || |||||||| ||||||
Sbjct: 485 caccacgagtacaccgcgcccattggcttcgcagcgccatacgctcactgggcagaggtg 544
Query: 65 ctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatcaca 124
|| ||||| |||||||||||||||| || || ||||||| |||||||||||||| ||
Sbjct: 545 ctcatacttggcatcccctccttcgctggcccggccattgcaccaggccacatgattacc 604
Query: 125 ttctggctctggattatactccgtcaggtggaggctatcgagacacatagcggctttgat 184
|||||||||||||||||||| |||||| |||| || || || ||||| ||||| ||||||
Sbjct: 605 ttctggctctggattatacttcgtcagatggaagccattgacacacacagcggttttgat 664
Query: 185 ttcccattcaccccgacaaagtatattccattctatggaggagcagaataccatgactat 244
|||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 665 ttcccattcagcctgacaaagtatattccgttctatggaggagcagaataccatgattat 724
Query: 245 catcattatgtaggaggccagagccaaagcaattttgcttctgttttcacttactgtgat 304
||||| || || |||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 725 catcactacgttggaggccaaagccagagcaattttgcttcggttttcacgtactgtgat 784
Query: 305 tacttatat-ggcactgacaaaggttacagattccacaa 342
||| | ||| || || |||| ||| ||||||||||||||
Sbjct: 785 tacctgtatgggaaccgacagaggctacagattccacaa 823
>gb|CA010209.1|CA010209 HT11C14u HT Hordeum vulgare subsp. vulgare cDNA clone HT11C14
3-PRIME, mRNA sequence
Length = 549
Score = 254 bits (128), Expect = 3e-066
Identities = 227/260 (87%)
Strand = Plus / Minus
Query: 112 ccacatgatcacattctggctctggattatactccgtcaggtggaggctatcgagacaca 171
||||||||| || |||||||||||||||||||| |||||| |||| || || || |||||
Sbjct: 549 ccacatgattaccttctggctctggattatacttcgtcagatggaagccattgacacaca 490
Query: 172 tagcggctttgatttcccattcaccccgacaaagtatattccattctatggaggagcaga 231
||||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct: 489 cagcggttttgatttcccattcagcctgacaaagtatattccgttctatggaggagcaga 430
Query: 232 ataccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgtttt 291
||||||||| |||||||| || || |||||||| ||||| |||||||||||||| |||||
Sbjct: 429 ataccatgattatcatcactacgttggaggccaaagccagagcaattttgcttcggtttt 370
Query: 292 cacttactgtgattacttatatggcactgacaaaggttacagattccacaaaacatacct 351
||| |||||||||||| | ||||| || |||| ||| |||||||||||||| | ||| |
Sbjct: 369 cacgtactgtgattacctgtatgggaccgacagaggctacagattccacaaggcttactt 310
Query: 352 agcaaagctgaaggatctgg 371
||||||| ||||||| ||||
Sbjct: 309 agcaaagttgaaggacctgg 290
>gb|BU980982.1|BU980982 HA22E16r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E16
5-PRIME, mRNA sequence
Length = 644
Score = 220 bits (111), Expect = 5e-056
Identities = 213/246 (86%), Gaps = 1/246 (0%)
Strand = Plus / Plus
Query: 5 caccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgaggtg 64
||||| |||| ||| ||||| || || |||||||| ||||| || |||||||| ||||||
Sbjct: 397 caccacgagtacaccgcgcccattggcttcgcagcgccatacgctcactgggcagaggtg 456
Query: 65 ctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatcaca 124
|| ||||| |||||||||||||||| || || ||||||| |||||||||||||| ||
Sbjct: 457 ctcatacttggcatcccctccttcgctggcccggccattgcaccaggccacatgattacc 516
Query: 125 ttctggctctggattatactccgtcaggtggaggctatcgagacacatagcggc-tttga 183
|||||||||||||||||||| |||||| |||| || || || ||||| ||||| |||||
Sbjct: 517 ttctggctctggattatacttcgtcagatggaagccattgacacacacagcggnttttga 576
Query: 184 tttcccattcaccccgacaaagtatattccattctatggaggagcagaataccatgacta 243
||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 577 tttcccattcagcctgacaaagtatattccgttctatggaggagcagaataccatgatta 636
Query: 244 tcatca 249
||||||
Sbjct: 637 tcatca 642
>gb|AL511115.1|AL511115 AL511115 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07A18u 3',
mRNA sequence
Length = 487
Score = 210 bits (106), Expect = 4e-053
Identities = 196/226 (86%)
Strand = Plus / Minus
Query: 146 cgtcaggtggaggctatcgagacacatagcggctttgatttcccattcaccccgacaaag 205
|||||| |||| || || || ||||| ||||| |||||||||||||||| || |||||||
Sbjct: 487 cgtcagatggaagccattgacacacacagcggttttgatttcccattcagcctgacaaag 428
Query: 206 tatattccattctatggaggagcagaataccatgactatcatcattatgtaggaggccag 265
|||||||| |||||||||||||||||||||||||| |||||||| || || ||||||||
Sbjct: 427 tatattccgttctatggaggagcagaataccatgattatcatcactacgttggaggccaa 368
Query: 266 agccaaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaa 325
||||| |||||||||||||| |||||||| |||||||||||| | ||||| || |||| |
Sbjct: 367 agccagagcaattttgcttcggttttcacgtactgtgattacctgtatgggaccgacaga 308
Query: 326 ggttacagattccacaaaacatacctagcaaagctgaaggatctgg 371
|| |||||||||||||| | ||| |||||||| ||||||| ||||
Sbjct: 307 ggctacagattccacaaggcttacttagcaaagttgaaggacctgg 262
>gb|BF622942.3|BF622942 HVSMEa0012C24f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0012C24f, mRNA sequence
Length = 803
Score = 194 bits (98), Expect = 3e-048
Identities = 222/261 (85%), Gaps = 2/261 (0%)
Strand = Plus / Plus
Query: 5 caccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgaggtg 64
||||| |||| ||| ||||| || || |||||||| ||||| || |||||||| ||||||
Sbjct: 507 caccacgagtacaccgcgcccattggcttcgcagcgccatacgctcactgggcagaggtg 566
Query: 65 ctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatcaca 124
|| ||||| |||||||||||||||| || || ||||||| |||||||||||||| ||
Sbjct: 567 ctcatacttggcatcccctccttcgctggcccggccattgcaccaggccacatgattacc 626
Query: 125 ttctggctctggattatactccgtcaggtggaggctatcgagacacatagcgg-ctttga 183
|||||||||||||||||||| |||||| |||| || || || ||||| ||||| |||||
Sbjct: 627 ttctggctctggattatacttcgtcagatggaagccattgacacacacagcggtntttga 686
Query: 184 tttcccattcaccccgacaaagtatattccattctatggaggagcagaataccatgacta 243
||||||||||| || ||||||||||||||| |||||||| ||||||||| |||||| ||
Sbjct: 687 tttcccattcagcctgacaaagtatattccgttctatgggagagcagaat-ccatgatta 745
Query: 244 tcatcattatgtaggaggcca 264
|||||| || || ||||||||
Sbjct: 746 tcatcactacgttggaggcca 766
>gb|AL507854.1|AL507854 AL507854 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07A18V 5',
mRNA sequence
Length = 700
Score = 135 bits (68), Expect = 2e-030
Identities = 158/187 (84%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 5 caccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgaggtg 64
||||| |||| ||| ||||| || || |||||||| ||||| || |||||||| ||||||
Sbjct: 514 caccacgagtacaccgcgcccattggcttcgcagcgccatacgctcactgggcagaggtg 573
Query: 65 ctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatcaca 124
|| ||||| |||||||||||||||| || || ||||||| |||||||||||||| ||
Sbjct: 574 ctcatacttggcatcccctccttcgctggcccggccattgcaccaggccacatgattacc 633
Query: 125 ttctggctctggattatactccgtcaggtggaggctatcgagacaca-tagcggctttga 183
|||||||||||||||||||| |||||| |||| || || || ||||| ||||| |||||
Sbjct: 634 ttctggctctggattatacttcgtcagatggaagccattgacacacacaagcggntttga 693
Query: 184 tttccca 190
|||||||
Sbjct: 694 tttccca 700
>gb|CA009082.1|CA009082 HU13C01r HU Hordeum vulgare subsp. vulgare cDNA clone HU13C01
5-PRIME, mRNA sequence
Length = 611
Score = 119 bits (60), Expect = 1e-025
Identities = 120/140 (85%)
Strand = Plus / Plus
Query: 5 caccatgagttcactgcgccaataggattcgcagctccatatgcacactgggctgaggtg 64
||||| |||| ||| ||||| || || |||||||| ||||| || |||||||| ||||||
Sbjct: 470 caccacgagtacaccgcgcccattggcttcgcagcgccatacgctcactgggcagaggtg 529
Query: 65 ctgatactcggcatcccctccttcgtcgggccagccattgttccaggccacatgatcaca 124
|| ||||| |||||||||||||||| || || ||||||| |||||||||||||| ||
Sbjct: 530 ctcatacttggcatcccctccttcgctggcccggccattgcaccaggccacatgattacc 589
Query: 125 ttctggctctggattatact 144
||||||||||||||||||||
Sbjct: 590 ttctggctctggattatact 609
>gb|BI957483.1|BI957483 HVSMEn0009N04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009N04f, mRNA sequence
Length = 658
Score = 85.7 bits (43), Expect = 2e-015
Identities = 247/315 (78%)
Strand = Plus / Plus
Query: 44 tatgcacactgggctgaggtgctgatactcggcatcccctccttcgtcgggccagccatt 103
||||| |||||||| |||||||| || |||||| ||||| ||||| || || ||||||
Sbjct: 294 tatgcgcactgggcagaggtgctcatcctcggcgtccccgccttcactggccccgccatt 353
Query: 104 gttccaggccacatgatcacattctggctctggattatactccgtcaggtggaggctatc 163
|| || ||||||||| ||| || ||||||||| | |||| || || | ||||| ||
Sbjct: 354 gtgccctgccacatgaccaccttatggctctggttcgtactgcgccacctcgaggccata 413
Query: 164 gagacacatagcggctttgatttcccattcaccccgacaaagtatattccattctatgga 223
|| | || ||||| || | |||||||||| |||||||||| ||| || ||||| |||
Sbjct: 414 gacatccacagcgggttcaacttcccattcaacccgacaaagcttatcccgttctacgga 473
Query: 224 ggagcagaataccatgactatcatcattatgtaggaggccagagccaaagcaattttgct 283
|| |||||| |||||||||| ||||| |||| || | |||||||| ||||| || ||
Sbjct: 474 ggggcagaacaccatgactaccatcaccgtgtatgaaggcagagccagagcaacttctct 533
Query: 284 tctgttttcacttactgtgattacttatatggcactgacaaaggttacagattccacaaa 343
||||||||||| | |||||| ||||| ||||| || || ||||| |||| | |||||||
Sbjct: 534 tctgttttcaccttctgtgactacttgtatggaacagataaagggtacaaacaccacaaa 593
Query: 344 acatacctagcaaag 358
|| ||||||||||
Sbjct: 594 gcaagcctagcaaag 608
>gb|BM816351.1|BM816351 HB106B06_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB106B06_SK.ab1 similar to (AC022464) F22G5.23
[Arabidopsis thaliana],(AC025783) putative C-4 sterol
methyl oxidase [Oryza sativa], mRNA sequence
Length = 918
Score = 79.8 bits (40), Expect = 1e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 203 aagtatattccattctatggaggagcagaataccatgactatcatcattatgtaggaggc 262
||||| || |||||||| ||||| ||||| |||||||||| ||||| || |||||||
Sbjct: 445 aagtacataccattctacggaggggcagagcaccatgactaccatcactacataggagga 504
Query: 263 cagagccaaagcaattttgcttctgttttcacttactgtgattacttatatggcactgac 322
|||||| | ||||| || || |||||||||| |||||||||||| |||| || || ||
Sbjct: 505 cagagcaagagcaacttcgcccctgttttcacctactgtgattacatatacggaacggat 564
Query: 323 aaaggttacagattccacaaaacatacctagcaaagctgaagga 366
||||| ||||||| ||||| || ||| ||||||||||||||
Sbjct: 565 aaaggctacagatatcacaaggcaaccctggcaaagctgaagga 608
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgcc 24
||||||||||||||||| |||||
Sbjct: 244 gttcaccatgagttcacggcgcc 266
>gb|BM816352.1|BM816352 HB106C03_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB106C03_SK.ab1 similar to (AC022464) F22G5.23
[Arabidopsis thaliana],(AC025783) putative C-4 sterol
methyl oxidase [Oryza sativa], mRNA sequence
Length = 903
Score = 79.8 bits (40), Expect = 1e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 203 aagtatattccattctatggaggagcagaataccatgactatcatcattatgtaggaggc 262
||||| || |||||||| ||||| ||||| |||||||||| ||||| || |||||||
Sbjct: 362 aagtacataccattctacggaggggcagagcaccatgactaccatcactacataggagga 421
Query: 263 cagagccaaagcaattttgcttctgttttcacttactgtgattacttatatggcactgac 322
|||||| | ||||| || || |||||||||| |||||||||||| |||| || || ||
Sbjct: 422 cagagcaagagcaacttcgcccctgttttcacctactgtgattacatatacggaacggat 481
Query: 323 aaaggttacagattccacaaaacatacctagcaaagctgaagga 366
||||| ||||||| ||||| || ||| ||||||||||||||
Sbjct: 482 aaaggctacagatatcacaaggcaaccctggcaaagctgaagga 525
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgcc 24
||||||||||||||||| |||||
Sbjct: 161 gttcaccatgagttcacggcgcc 183
>gb|BJ456266.1|BJ456266 BJ456266 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20f03 3', mRNA sequence
Length = 610
Score = 79.8 bits (40), Expect = 1e-013
Identities = 133/164 (81%)
Strand = Plus / Minus
Query: 203 aagtatattccattctatggaggagcagaataccatgactatcatcattatgtaggaggc 262
||||| || |||||||| ||||| ||||| |||||||||| ||||| || |||||||
Sbjct: 346 aagtacataccattctacggaggggcagagcaccatgactaccatcactacataggagga 287
Query: 263 cagagccaaagcaattttgcttctgttttcacttactgtgattacttatatggcactgac 322
|||||| | ||||| || || |||||||||| |||||||||||| |||| || || ||
Sbjct: 286 cagagcaagagcaacttcgcccctgttttcacctactgtgattacatatacggaacggat 227
Query: 323 aaaggttacagattccacaaaacatacctagcaaagctgaagga 366
||||| ||||||| ||||| || ||| ||||||||||||||
Sbjct: 226 aaaggctacagatatcacaaggcaaccctggcaaagctgaagga 183
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 2 gttcaccatgagttcactgcgcc 24
||||||||||||||||| |||||
Sbjct: 547 gttcaccatgagttcacggcgcc 525
>gb|BQ468531.1|BQ468531 HM01I09T HM Hordeum vulgare subsp. vulgare cDNA clone HM01I09
5-PRIME, mRNA sequence
Length = 640
Score = 79.8 bits (40), Expect = 1e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 203 aagtatattccattctatggaggagcagaataccatgactatcatcattatgtaggaggc 262
||||| || |||||||| ||||| ||||| |||||||||| ||||| || |||||||
Sbjct: 421 aagtacataccattctacggaggggcagagcaccatgactaccatcactacataggagga 480
Query: 263 cagagccaaagcaattttgcttctgttttcacttactgtgattacttatatggcactgac 322
|||||| | ||||| || || |||||||||| |||||||||||| |||| || || ||
Sbjct: 481 cagagcaagagcaacttcgcccctgttttcacctactgtgattacatatacggaacggat 540
Query: 323 aaaggttacagattccacaaaacatacctagcaaagctgaagga 366
||||| ||||||| ||||| || ||| ||||||||||||||
Sbjct: 541 aaaggctacagatatcacaaggcaaccctggcaaagctgaagga 584
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgcc 24
||||||||||||||||| |||||
Sbjct: 220 gttcaccatgagttcacggcgcc 242
>gb|BM445019.2|BM445019 EBem09_SQ007_D04_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_D04 5', mRNA sequence
Length = 340
Score = 67.9 bits (34), Expect = 4e-010
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 203 aagtatattccattctatggaggagcagaataccatgactatcatcattatgtaggaggc 262
||||| || |||||||| ||||| ||||| |||||||||| ||||| || |||||||
Sbjct: 213 aagtacataccattctacggaggggcagagcaccatgactaccatcactacataggagga 272
Query: 263 cagagccaaagcaattttgcttctgttttcacttactgtgattacttata 312
|||||| | ||||| || || |||||||||| |||||||||||| ||||
Sbjct: 273 cagagcaagagcaacttcgcccctgttttcacctactgtgattacatata 322
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgcc 24
||||||||||||||||| |||||
Sbjct: 12 gttcaccatgagttcacggcgcc 34
>gb|BJ453141.1|BJ453141 BJ453141 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41n13 5', mRNA sequence
Length = 614
Score = 61.9 bits (31), Expect = 3e-008
Identities = 106/131 (80%)
Strand = Plus / Plus
Query: 236 catgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttcact 295
|||||||| ||||| || ||||||| |||||| | ||||| || || ||||||||||
Sbjct: 2 catgactaccatcactacataggaggacagagcaagagcaacttcgcccctgttttcacc 61
Query: 296 tactgtgattacttatatggcactgacaaaggttacagattccacaaaacatacctagca 355
|||||||||||| |||| || || || ||||| ||||||| ||||| || ||| |||
Sbjct: 62 tactgtgattacatatacggaacggataaaggctacagatatcacaaggcaaccctggca 121
Query: 356 aagctgaagga 366
|||||||||||
Sbjct: 122 aagctgaagga 132
>gb|BJ460691.1|BJ460691 BJ460691 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41n13 3', mRNA sequence
Length = 541
Score = 61.9 bits (31), Expect = 3e-008
Identities = 106/131 (80%)
Strand = Plus / Minus
Query: 236 catgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttcact 295
|||||||| ||||| || ||||||| |||||| | ||||| || || ||||||||||
Sbjct: 540 catgactaccatcactacataggaggacagagcaagagcaacttcgcccctgttttcacc 481
Query: 296 tactgtgattacttatatggcactgacaaaggttacagattccacaaaacatacctagca 355
|||||||||||| |||| || || || ||||| ||||||| ||||| || ||| |||
Sbjct: 480 tactgtgattacatatacggaacggataaaggctacagatatcacaaggcaaccctggca 421
Query: 356 aagctgaagga 366
|||||||||||
Sbjct: 420 aagctgaagga 410
>gb|BF622107.2|BF622107 HVSMEa0001M11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001M11f, mRNA sequence
Length = 595
Score = 56.0 bits (28), Expect = 2e-006
Identities = 91/112 (81%)
Strand = Plus / Plus
Query: 255 taggaggccagagccaaagcaattttgcttctgttttcacttactgtgattacttatatg 314
||||||| |||||| | ||||| || || |||||||||| |||||||||||| |||| |
Sbjct: 39 taggaggacagagcaagagcaacttcgcccctgttttcacctactgtgattacatatacg 98
Query: 315 gcactgacaaaggttacagattccacaaaacatacctagcaaagctgaagga 366
| || || ||||| ||||||| ||||| || ||| ||||||||||||||
Sbjct: 99 gaacggataaaggctacagatatcacaaggcaaccctggcaaagctgaagga 150
>gb|CD240741.1|CD240741 LP20295 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-295,
mRNA sequence
Length = 290
Score = 54.0 bits (27), Expect = 6e-006
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 297 actgtgattacttatatggcactgacaaaggttacagattccacaaaacatacctagcaa 356
||||||||||| | ||||| || |||| ||| |||||||||||||| | ||| ||||||
Sbjct: 290 actgtgattacctgtatgggaccgacagaggctacagattccacaaggcttacttagcaa 231
Query: 357 agctgaaggatctgg 371
|| ||||||| ||||
Sbjct: 230 agttgaaggacctgg 216
>gb|CD240761.1|CD240761 LP20344 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-344,
mRNA sequence
Length = 290
Score = 54.0 bits (27), Expect = 6e-006
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 297 actgtgattacttatatggcactgacaaaggttacagattccacaaaacatacctagcaa 356
||||||||||| | ||||| || |||| ||| |||||||||||||| | ||| ||||||
Sbjct: 290 actgtgattacctgtatgggaccgacagaggctacagattccacaaggcttacttagcaa 231
Query: 357 agctgaaggatctgg 371
|| ||||||| ||||
Sbjct: 230 agttgaaggacctgg 216
>gb|BJ447952.1|BJ447952 BJ447952 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17n22 5', mRNA sequence
Length = 606
Score = 52.0 bits (26), Expect = 2e-005
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 285 ctgttttcacttactgtgattacttatatggcactgacaaaggttacagattccacaaaa 344
|||||||||| |||||||||||| |||| || || || ||||| ||||||| |||||
Sbjct: 23 ctgttttcacctactgtgattacatatacggaacggataaaggctacagatatcacaagg 82
Query: 345 catacctagcaaagctgaagga 366
|| ||| ||||||||||||||
Sbjct: 83 caaccctggcaaagctgaagga 104
>gb|BJ451061.1|BJ451061 BJ451061 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32i15 5', mRNA sequence
Length = 606
Score = 52.0 bits (26), Expect = 2e-005
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 285 ctgttttcacttactgtgattacttatatggcactgacaaaggttacagattccacaaaa 344
|||||||||| |||||||||||| |||| || || || ||||| ||||||| |||||
Sbjct: 24 ctgttttcacctactgtgattacatatacggaacggataaaggctacagatatcacaagg 83
Query: 345 catacctagcaaagctgaagga 366
|| ||| ||||||||||||||
Sbjct: 84 caaccctggcaaagctgaagga 105
>gb|BJ455697.1|BJ455697 BJ455697 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17n22 3', mRNA sequence
Length = 584
Score = 52.0 bits (26), Expect = 2e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 285 ctgttttcacttactgtgattacttatatggcactgacaaaggttacagattccacaaaa 344
|||||||||| |||||||||||| |||| || || || ||||| ||||||| |||||
Sbjct: 562 ctgttttcacctactgtgattacatatacggaacggataaaggctacagatatcacaagg 503
Query: 345 catacctagcaaagctgaagga 366
|| ||| ||||||||||||||
Sbjct: 502 caaccctggcaaagctgaagga 481
>gb|BJ458566.1|BJ458566 BJ458566 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32i15 3', mRNA sequence
Length = 549
Score = 52.0 bits (26), Expect = 2e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 285 ctgttttcacttactgtgattacttatatggcactgacaaaggttacagattccacaaaa 344
|||||||||| |||||||||||| |||| || || || ||||| ||||||| |||||
Sbjct: 527 ctgttttcacctactgtgattacatatacggaacggataaaggctacagatatcacaagg 468
Query: 345 catacctagcaaagctgaagga 366
|| ||| ||||||||||||||
Sbjct: 467 caaccctggcaaagctgaagga 446
>gb|BF630613.2|BF630613 HVSMEb0012C20f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012C20f, mRNA sequence
Length = 714
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 gttcaccatgagttcactgcgcc 24
||||||||||||||||| |||||
Sbjct: 684 gttcaccatgagttcacggcgcc 706
>gb|BG367870.1|BG367870 HVSMEi0014B22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0014B22f, mRNA sequence
Length = 867
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 aaagctgaaggatctgggg 373
|||||||||||||||||||
Sbjct: 435 aaagctgaaggatctgggg 453
>gb|BE195648.3|BE195648 HVSMEh0090A21f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0090A21f, mRNA sequence
Length = 919
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 355 aaagctgaaggatctgggg 373
|||||||||||||||||||
Sbjct: 631 aaagctgaaggatctgggg 649
>gb|BQ661016.1|BQ661016 HM01I09w HM Hordeum vulgare subsp. vulgare cDNA clone HM01I09
3-PRIME, mRNA sequence
Length = 586
Score = 38.2 bits (19), Expect = 0.37
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 296 tactgtgattacttatatggcactgacaaaggttacagattccacaaaacatacctagca 355
|||||||||||| |||| || || || ||||| ||||||| ||||| || ||| |||
Sbjct: 583 tactgtgattacatatacggaacggataaaggctacagatatcacaaggcaaccctggca 524
Query: 356 aagctgaagga 366
|||||||||||
Sbjct: 523 aagctgaagga 513
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,066
Number of Sequences: 312970
Number of extensions: 44066
Number of successful extensions: 10152
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10103
Number of HSP's gapped (non-prelim): 45
length of query: 682
length of database: 175,134,539
effective HSP length: 19
effective length of query: 663
effective length of database: 169,188,109
effective search space: 112171716267
effective search space used: 112171716267
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)